{"id":"https://openalex.org/W4210613899","doi":"https://doi.org/10.1093/bib/bbac034","title":"Shedding light on the hidden human proteome expands immunopeptidome in cancer","display_name":"Shedding light on the hidden human proteome expands immunopeptidome in cancer","publication_year":2022,"publication_date":"2022-01-26","ids":{"openalex":"https://openalex.org/W4210613899","doi":"https://doi.org/10.1093/bib/bbac034","pmid":"https://pubmed.ncbi.nlm.nih.gov/35189633"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac034","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac034","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100389127","display_name":"Yongsheng Li","orcid":"https://orcid.org/0000-0003-1914-0727"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongsheng Li","raw_affiliation_strings":["College of Biomedical Information and Engineering, Hainan Women and Children\u2019s Medical Center, Hainan Medical University, Haikou 571199, China","College of Biomedical Information and Engineering, Hainan Women and Children's Medical Center, Hainan Medical University, Haikou 571199, China"],"raw_orcid":"https://orcid.org/0000-0003-1914-0727","affiliations":[{"raw_affiliation_string":"College of Biomedical Information and Engineering, Hainan Women and Children\u2019s Medical Center, Hainan Medical University, Haikou 571199, China","institution_ids":["https://openalex.org/I79731167"]},{"raw_affiliation_string":"College of Biomedical Information and Engineering, Hainan Women and Children's Medical Center, Hainan Medical University, Haikou 571199, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013653265","display_name":"Yunpeng Zhang","orcid":"https://orcid.org/0000-0002-3709-3656"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunpeng Zhang","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"],"raw_orcid":"https://orcid.org/0000-0002-3709-3656","affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085405031","display_name":"Tao Pan","orcid":"https://orcid.org/0000-0002-9244-9950"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Pan","raw_affiliation_strings":["College of Biomedical Information and Engineering, Hainan Women and Children\u2019s Medical Center, Hainan Medical University, Haikou 571199, China","College of Biomedical Information and Engineering, Hainan Women and Children's Medical Center, Hainan Medical University, Haikou 571199, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Biomedical Information and Engineering, Hainan Women and Children\u2019s Medical Center, Hainan Medical University, Haikou 571199, China","institution_ids":["https://openalex.org/I79731167"]},{"raw_affiliation_string":"College of Biomedical Information and Engineering, Hainan Women and Children's Medical Center, Hainan Medical University, Haikou 571199, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101891427","display_name":"Ping Zhou","orcid":"https://orcid.org/0000-0002-5792-6790"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ping Zhou","raw_affiliation_strings":["Department of Radiotherapy, the First Affiliated Hospital of Hainan Medical University, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiotherapy, the First Affiliated Hospital of Hainan Medical University, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061202285","display_name":"Weiwei Zhou","orcid":"https://orcid.org/0000-0003-1641-8965"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weiwei Zhou","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109269775","display_name":"Yueying Gao","orcid":null},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yueying Gao","raw_affiliation_strings":["College of Biomedical Information and Engineering, Hainan Women and Children\u2019s Medical Center, Hainan Medical University, Haikou 571199, China","College of Biomedical Information and Engineering, Hainan Women and Children's Medical Center, Hainan Medical University, Haikou 571199, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Biomedical Information and Engineering, Hainan Women and Children\u2019s Medical Center, Hainan Medical University, Haikou 571199, China","institution_ids":["https://openalex.org/I79731167"]},{"raw_affiliation_string":"College of Biomedical Information and Engineering, Hainan Women and Children's Medical Center, Hainan Medical University, Haikou 571199, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023442400","display_name":"Shaojiang Zheng","orcid":"https://orcid.org/0000-0002-2323-0736"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shaojiang Zheng","raw_affiliation_strings":["Key Laboratory of Emergency and Trauma of Ministry of Education, Tumor Institute of the First Affiliated Hospital, Hainan Medical University, Haikou, 571199, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Emergency and Trauma of Ministry of Education, Tumor Institute of the First Affiliated Hospital, Hainan Medical University, Haikou, 571199, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076495142","display_name":"Juan Xu","orcid":"https://orcid.org/0000-0002-3709-4165"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Juan Xu","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"],"raw_orcid":"https://orcid.org/0000-0002-3709-4165","affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China","institution_ids":["https://openalex.org/I156144747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5023442400","https://openalex.org/A5076495142"],"corresponding_institution_ids":["https://openalex.org/I156144747","https://openalex.org/I79731167"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.5876,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.61801782,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"23","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.7790944576263428},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.7399898171424866},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.7185700535774231},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6292834877967834},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5488100051879883},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.5218005180358887},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5108113288879395},{"id":"https://openalex.org/keywords/human-proteome-project","display_name":"Human proteome project","score":0.4709804058074951},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33624547719955444},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.25813472270965576},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.19550380110740662},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.12689879536628723}],"concepts":[{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.7790944576263428},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.7399898171424866},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.7185700535774231},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6292834877967834},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5488100051879883},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.5218005180358887},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5108113288879395},{"id":"https://openalex.org/C94795543","wikidata":"https://www.wikidata.org/wiki/Q3813754","display_name":"Human proteome project","level":4,"score":0.4709804058074951},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33624547719955444},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.25813472270965576},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.19550380110740662},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.12689879536628723}],"mesh":[{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac034","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac034","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35189633","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35189633","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.4000000059604645}],"awards":[{"id":"https://openalex.org/G1371737824","display_name":"\u57fa\u4e8e\u591a\u6e90\u6570\u636e\u878d\u5408\u7684\u80bf\u7624\u514d\u75ab\u5173\u952e\u8c03\u63a7\u56e0\u5b50\u8bc6\u522b\u53ca\u4f5c\u7528\u673a\u5236\u7814\u7a76","funder_award_id":"32060152","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3435502301","display_name":null,"funder_award_id":"31871338","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4412563809","display_name":"\u9776\u5411FGFR1\u589e\u5f3a\u578b\u4f53\u5185DC\u75ab\u82d7\u6297\u80bf\u7624\u8840\u7ba1\u751f\u6210\u7814\u7a76","funder_award_id":"81760553","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5193609024","display_name":"\u91cd\u5927\u75be\u75c5\u57fa\u56e0\u7ec4\u4e0e\u8868\u89c2\u7ec4\u6539\u53d8\u9a71\u52a8\u7684\u975e\u7f16\u7801RNA(miRNA/lncRNA)\u8c03\u63a7\u673a\u5236\u53ca\u5176\u529f\u80fd\u7814\u7a76","funder_award_id":"61873075","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5253273320","display_name":null,"funder_award_id":"32070673","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6037411680","display_name":"FoxM1-Smad4\u6b63\u53cd\u9988\u4fe1\u53f7\u73af\u8def\u5728\u80f0\u817a\u764c\u8fdb\u5c55\u4e2d\u7684\u4f5c\u7528\u53ca\u673a\u5236\u7814\u7a76","funder_award_id":"81960528","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6725056020","display_name":null,"funder_award_id":"31970646","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7819028244","display_name":null,"funder_award_id":"2018YFC2000100","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8371465948","display_name":null,"funder_award_id":"32170676","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":149,"referenced_works":["https://openalex.org/W84269450","https://openalex.org/W1884583352","https://openalex.org/W1922412259","https://openalex.org/W1940241680","https://openalex.org/W1972785590","https://openalex.org/W1985987855","https://openalex.org/W1987288591","https://openalex.org/W1994795462","https://openalex.org/W2011458181","https://openalex.org/W2046414594","https://openalex.org/W2046583421","https://openalex.org/W2056499061","https://openalex.org/W2059858676","https://openalex.org/W2059874060","https://openalex.org/W2064165694","https://openalex.org/W2066231767","https://openalex.org/W2073462203","https://openalex.org/W2074887295","https://openalex.org/W2079517684","https://openalex.org/W2082534286","https://openalex.org/W2084799522","https://openalex.org/W2089273345","https://openalex.org/W2094375432","https://openalex.org/W2101485657","https://openalex.org/W2102144390","https://openalex.org/W2113617961","https://openalex.org/W2118271123","https://openalex.org/W2122507780","https://openalex.org/W2134481741","https://openalex.org/W2135059404","https://openalex.org/W2136957315","https://openalex.org/W2137088550","https://openalex.org/W2138601221","https://openalex.org/W2139399606","https://openalex.org/W2152352881","https://openalex.org/W2152771882","https://openalex.org/W2155943701","https://openalex.org/W2156353875","https://openalex.org/W2166820820","https://openalex.org/W2205690268","https://openalex.org/W2242659647","https://openalex.org/W2265419075","https://openalex.org/W2345351072","https://openalex.org/W2411831786","https://openalex.org/W2484917680","https://openalex.org/W2491550587","https://openalex.org/W2518899399","https://openalex.org/W2519691041","https://openalex.org/W2527456406","https://openalex.org/W2535013134","https://openalex.org/W2544360569","https://openalex.org/W2559953833","https://openalex.org/W2586503267","https://openalex.org/W2588457489","https://openalex.org/W2590497374","https://openalex.org/W2592988313","https://openalex.org/W2725163375","https://openalex.org/W2725858612","https://openalex.org/W2743416243","https://openalex.org/W2752880228","https://openalex.org/W2760921293","https://openalex.org/W2761249484","https://openalex.org/W2762506271","https://openalex.org/W2765561148","https://openalex.org/W2767061187","https://openalex.org/W2774585454","https://openalex.org/W2783029521","https://openalex.org/W2796292093","https://openalex.org/W2801309958","https://openalex.org/W2802118789","https://openalex.org/W2803653486","https://openalex.org/W2809620624","https://openalex.org/W2867868648","https://openalex.org/W2885227878","https://openalex.org/W2885934659","https://openalex.org/W2891169704","https://openalex.org/W2891596321","https://openalex.org/W2896389733","https://openalex.org/W2896551417","https://openalex.org/W2903083041","https://openalex.org/W2913665794","https://openalex.org/W2914726479","https://openalex.org/W2915526143","https://openalex.org/W2938148515","https://openalex.org/W2942571435","https://openalex.org/W2944031662","https://openalex.org/W2949644336","https://openalex.org/W2950078241","https://openalex.org/W2950512597","https://openalex.org/W2952001873","https://openalex.org/W2954615294","https://openalex.org/W2964739845","https://openalex.org/W2969716533","https://openalex.org/W2971055195","https://openalex.org/W2972054455","https://openalex.org/W2972917142","https://openalex.org/W2979274622","https://openalex.org/W2979293383","https://openalex.org/W2979882137","https://openalex.org/W2980759299","https://openalex.org/W2980927088","https://openalex.org/W2982476296","https://openalex.org/W2985532529","https://openalex.org/W2998313390","https://openalex.org/W3001475835","https://openalex.org/W3003540881","https://openalex.org/W3003986096","https://openalex.org/W3004850558","https://openalex.org/W3005340795","https://openalex.org/W3006194842","https://openalex.org/W3008008711","https://openalex.org/W3009535588","https://openalex.org/W3011727606","https://openalex.org/W3015750191","https://openalex.org/W3022400151","https://openalex.org/W3024570138","https://openalex.org/W3033368660","https://openalex.org/W3036296795","https://openalex.org/W3042347895","https://openalex.org/W3081768459","https://openalex.org/W3082024297","https://openalex.org/W3087442100","https://openalex.org/W3090569323","https://openalex.org/W3095365118","https://openalex.org/W3111185940","https://openalex.org/W3112022675","https://openalex.org/W3113759864","https://openalex.org/W3118426341","https://openalex.org/W3127402714","https://openalex.org/W3128572085","https://openalex.org/W3129061826","https://openalex.org/W3134041195","https://openalex.org/W3134142470","https://openalex.org/W3135148976","https://openalex.org/W3135170287","https://openalex.org/W3153608969","https://openalex.org/W3176618876","https://openalex.org/W3194730913","https://openalex.org/W3201720288","https://openalex.org/W3202784466","https://openalex.org/W3205324211","https://openalex.org/W3212743825","https://openalex.org/W4200578065","https://openalex.org/W6603412021","https://openalex.org/W6675341203","https://openalex.org/W6727927614","https://openalex.org/W6802667736","https://openalex.org/W6803740288","https://openalex.org/W7073967104"],"related_works":["https://openalex.org/W3092794487","https://openalex.org/W4321437894","https://openalex.org/W2806166617","https://openalex.org/W2030680494","https://openalex.org/W2094752534","https://openalex.org/W1881709772","https://openalex.org/W2025055488","https://openalex.org/W2939973050","https://openalex.org/W2575115220","https://openalex.org/W2580329791"],"abstract_inverted_index":{"Unrestrained":[0],"cellular":[1],"growth":[2],"and":[3,18,29,49,86,94,104,109,138],"immune":[4,59],"escape":[5],"of":[6,15,27,52,58,68,78,117,125,136],"a":[7,50],"tumor":[8,69,119],"are":[9],"associated":[10],"with":[11],"the":[12,16,38,43,56,100,115,122,126,134],"incidental":[13],"errors":[14],"genome":[17],"transcriptome.":[19],"Advances":[20],"in":[21,129],"next-generation":[22,46],"sequencing":[23,47],"have":[24,64],"identified":[25],"thousands":[26],"genomic":[28],"transcriptomic":[30],"aberrations":[31],"that":[32,36],"generate":[33],"variant":[34],"peptides":[35],"assemble":[37],"hidden":[39,127],"proteome,":[40],"further":[41],"expanding":[42],"immunopeptidome.":[44],"Emerging":[45],"technologies":[48],"number":[51],"computational":[53,103],"methods":[54],"estimated":[55],"abundance":[57],"infiltration":[60],"from":[61,82],"bulk":[62],"transcriptome":[63],"advanced":[65],"our":[66],"understanding":[67],"microenvironments.":[70],"Here,":[71],"we":[72,98],"will":[73,131],"characterize":[74],"several":[75],"major":[76],"types":[77],"tumor-specific":[79],"antigens":[80],"arising":[81],"single-nucleotide":[83],"variants,":[84],"insertions":[85],"deletions,":[87],"gene":[88],"fusion,":[89],"alternative":[90],"splicing,":[91],"RNA":[92],"editing":[93],"non-coding":[95],"RNAs.":[96],"Finally,":[97],"summarize":[99],"current":[101],"state-of-the-art":[102],"experimental":[105],"approaches":[106],"or":[107],"resources":[108],"provide":[110],"an":[111],"integrative":[112],"pipeline":[113],"for":[114,142],"identification":[116],"candidate":[118],"antigens.":[120],"Together,":[121],"systematic":[123],"investigation":[124],"proteome":[128],"cancer":[130],"help":[132],"facilitate":[133],"development":[135],"effective":[137],"durable":[139],"immunotherapy":[140],"targets":[141],"cancer.":[143]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
