{"id":"https://openalex.org/W4206015450","doi":"https://doi.org/10.1093/bib/bbac016","title":"Identifying drug\u2013target interactions via heterogeneous graph attention networks combined with cross-modal similarities","display_name":"Identifying drug\u2013target interactions via heterogeneous graph attention networks combined with cross-modal similarities","publication_year":2022,"publication_date":"2022-01-14","ids":{"openalex":"https://openalex.org/W4206015450","doi":"https://doi.org/10.1093/bib/bbac016","pmid":"https://pubmed.ncbi.nlm.nih.gov/35224614"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac016","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac016","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003684662","display_name":"Lu Jiang","orcid":"https://orcid.org/0000-0003-4529-8114"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lu Jiang","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University, Jingyue Street, 130117, Changchun, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Jingyue Street, 130117, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101963360","display_name":"Jiahao Sun","orcid":"https://orcid.org/0000-0001-6681-956X"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiahao Sun","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University, Jingyue Street, 130117, Changchun, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Jingyue Street, 130117, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008083218","display_name":"Yue Wang","orcid":"https://orcid.org/0000-0003-2060-8497"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue Wang","raw_affiliation_strings":["Department of Information Science and Technology, Dalian Maritime University, Lingshui Street, 116026, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Lingshui Street, 116026, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048969140","display_name":"Ning Qiao","orcid":"https://orcid.org/0000-0002-4809-5104"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qiao Ning","raw_affiliation_strings":["Department of Information Science and Technology, Dalian Maritime University, Lingshui Street, 116026, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Lingshui Street, 116026, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100758163","display_name":"Na Luo","orcid":"https://orcid.org/0000-0002-4825-0063"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Na Luo","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University, Jingyue Street, 130117, Changchun, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Jingyue Street, 130117, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023555343","display_name":"Minghao Yin","orcid":"https://orcid.org/0000-0002-6226-2394"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Minghao Yin","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University, Jingyue Street, 130117, Changchun, China"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Jingyue Street, 130117, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5023555343","https://openalex.org/A5048969140"],"corresponding_institution_ids":["https://openalex.org/I184983240","https://openalex.org/I43313876"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":5.1115,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.95925533,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"23","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9846000075340271,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6552591323852539},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5789210796356201},{"id":"https://openalex.org/keywords/heterogeneous-network","display_name":"Heterogeneous network","score":0.555417537689209},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5008835792541504},{"id":"https://openalex.org/keywords/graph-embedding","display_name":"Graph embedding","score":0.4610883593559265},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.4455144703388214},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.44305652379989624},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.41511163115501404},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4071982800960541},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.36707815527915955},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3667399287223816},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1154177188873291}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6552591323852539},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5789210796356201},{"id":"https://openalex.org/C158207573","wikidata":"https://www.wikidata.org/wiki/Q5747224","display_name":"Heterogeneous network","level":4,"score":0.555417537689209},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5008835792541504},{"id":"https://openalex.org/C75564084","wikidata":"https://www.wikidata.org/wiki/Q5597085","display_name":"Graph embedding","level":3,"score":0.4610883593559265},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.4455144703388214},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.44305652379989624},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.41511163115501404},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4071982800960541},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.36707815527915955},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3667399287223816},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1154177188873291},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C108037233","wikidata":"https://www.wikidata.org/wiki/Q11375","display_name":"Wireless network","level":3,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac016","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac016","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35224614","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35224614","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","display_name":"Decent work and economic growth","score":0.6200000047683716}],"awards":[{"id":"https://openalex.org/G2147507192","display_name":null,"funder_award_id":"61972384","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5327151618","display_name":null,"funder_award_id":"61976050","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8860909251","display_name":null,"funder_award_id":"2412018QD022","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1971106435","https://openalex.org/W1975414584","https://openalex.org/W2029348196","https://openalex.org/W2122863289","https://openalex.org/W2137052779","https://openalex.org/W2139736926","https://openalex.org/W2142572836","https://openalex.org/W2161607603","https://openalex.org/W2256119113","https://openalex.org/W2256553158","https://openalex.org/W2336207313","https://openalex.org/W2343107734","https://openalex.org/W2734718015","https://openalex.org/W2753953057","https://openalex.org/W2805086457","https://openalex.org/W2893316328","https://openalex.org/W2902557437","https://openalex.org/W2904742480","https://openalex.org/W2916047525","https://openalex.org/W2918929658","https://openalex.org/W2952522777","https://openalex.org/W2954599614","https://openalex.org/W3000043291","https://openalex.org/W3004617930","https://openalex.org/W3009246021","https://openalex.org/W3042517483","https://openalex.org/W3126516421","https://openalex.org/W3126680015","https://openalex.org/W3128707208","https://openalex.org/W3152870288","https://openalex.org/W3160988990","https://openalex.org/W3176821806","https://openalex.org/W3198603218","https://openalex.org/W6631190155","https://openalex.org/W6678161268","https://openalex.org/W6678161781","https://openalex.org/W6680306614","https://openalex.org/W6681125051","https://openalex.org/W6692173919","https://openalex.org/W6703994164","https://openalex.org/W6749334730","https://openalex.org/W6754967299","https://openalex.org/W6765049277","https://openalex.org/W6772281894","https://openalex.org/W6773166140","https://openalex.org/W6775005760","https://openalex.org/W6780861756","https://openalex.org/W6790758387","https://openalex.org/W6794091862"],"related_works":["https://openalex.org/W3036264823","https://openalex.org/W3206528106","https://openalex.org/W2123605750","https://openalex.org/W2912814903","https://openalex.org/W2088740331","https://openalex.org/W2950907416","https://openalex.org/W3038102983","https://openalex.org/W2082479932","https://openalex.org/W2932872266","https://openalex.org/W4281484020"],"abstract_inverted_index":{"Accurate":[0],"identification":[1],"of":[2,49,91,134,195],"drug-target":[3],"interactions":[4],"(DTIs)":[5],"plays":[6],"a":[7,61,104,110,135,163,186,222],"crucial":[8],"role":[9],"in":[10,30,140],"drug":[11,52,171],"discovery.":[12],"Compared":[13],"with":[14,153,199,229],"traditional":[15],"experimental":[16],"methods":[17,24,35],"that":[18],"are":[19,25,98,225],"labor-intensive":[20],"and":[21,27,45,53,74,84,95,117,144,172,182,197,214,221],"time-consuming,":[22],"computational":[23,34],"more":[26,28,160],"popular":[29],"recent":[31],"years.":[32],"Conventional":[33],"almost":[36],"simply":[37],"view":[38],"heterogeneous":[39,111,121,126,205],"networks":[40],"which":[41,70],"integrate":[42,159],"diverse":[43],"drug-related":[44],"target-related":[46],"dataset":[47],"instead":[48],"fully":[50],"exploring":[51],"target":[54],"similarities.":[55],"In":[56,120],"this":[57],"paper,":[58],"we":[59,108,123,149,168],"propose":[60,150],"new":[62],"method,":[63],"named":[64],"DTIHNC,":[65],"for":[66,145],"$\\mathbf{D}$rug-$\\mathbf{T}$arget":[67],"$\\mathbf{I}$nteraction":[68],"identification,":[69],"integrates":[71,192],"$\\mathbf{H}$eterogeneous":[72],"$\\mathbf{N}$etworks":[73],"$\\mathbf{C}$ross-modal":[75],"similarities":[76,174],"calculated":[77],"by":[78,103],"relations":[79,177],"between":[80,178],"drugs,":[81,92,179],"proteins,":[82,93,180],"diseases":[83,94,181],"side":[85,96,183],"effects.":[86,184],"Firstly,":[87],"the":[88,125,132,200],"low-dimensional":[89],"features":[90,102,202],"effects":[97],"obtained":[99,203],"from":[100,175,204],"original":[101],"denoising":[105],"autoencoder.":[106],"Then,":[107],"construct":[109],"network":[112,190],"across":[113],"drug,":[114],"protein,":[115],"disease":[116],"side-effect":[118],"nodes.":[119],"network,":[122],"exploit":[124],"graph":[127,156,206],"attention":[128,157,207],"operations":[129],"to":[130,158],"update":[131],"embedding":[133,201],"node":[136],"based":[137],"on":[138,227],"information":[139,161,194],"its":[141,212],"1-hop":[142],"neighbors,":[143],"multi-hop":[146],"neighbor":[147],"information,":[148],"random":[151],"walk":[152],"restart":[154],"aware":[155],"through":[162],"larger":[164],"neighborhood":[165],"region.":[166],"Next,":[167],"calculate":[169],"cross-modal":[170],"protein":[173],"cross-scale":[176],"Finally,":[185],"multiple-layer":[187],"convolutional":[188],"neural":[189],"deeply":[191],"similarity":[193],"drugs":[196],"proteins":[198],"network.":[208],"Experiments":[209],"have":[210],"demonstrated":[211],"effectiveness":[213],"better":[215],"performance":[216],"than":[217],"state-of-the-art":[218],"methods.":[219],"Datasets":[220],"stand-alone":[223],"package":[224],"provided":[226],"Github":[228],"website":[230],"https://github.com/ningq669/DTIHNC.":[231]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2025-10-10T00:00:00"}
