{"id":"https://openalex.org/W4206693666","doi":"https://doi.org/10.1093/bib/bbac014","title":"SVPath: an accurate pipeline for predicting the pathogenicity of human exon structural variants","display_name":"SVPath: an accurate pipeline for predicting the pathogenicity of human exon structural variants","publication_year":2022,"publication_date":"2022-01-13","ids":{"openalex":"https://openalex.org/W4206693666","doi":"https://doi.org/10.1093/bib/bbac014","pmid":"https://pubmed.ncbi.nlm.nih.gov/35180781"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac014","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbac014/42806453/bbac014.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/23/2/bbac014/42806453/bbac014.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102262835","display_name":"Yaning Yang","orcid":"https://orcid.org/0009-0002-5819-7005"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaning Yang","raw_affiliation_strings":["College of Computer Science and Electronic Engineering , Hunan University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering , Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100401784","display_name":"Xiaoqi Wang","orcid":"https://orcid.org/0000-0002-5868-5044"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoqi Wang","raw_affiliation_strings":["College of Computer Science and Electronic Engineering , Hunan University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering , Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074343752","display_name":"Deshan Zhou","orcid":"https://orcid.org/0000-0002-6725-9303"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Deshan Zhou","raw_affiliation_strings":["College of Computer Science and Electronic Engineering , Hunan University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering , Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041491902","display_name":"Dong\u2010Qing Wei","orcid":"https://orcid.org/0000-0003-4200-7502"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dong-Qing Wei","raw_affiliation_strings":["State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology , Shanghai Jiao Tong University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology , Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108008219","display_name":"Shaoliang Peng","orcid":"https://orcid.org/0000-0002-4647-2615"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]},{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shaoliang Peng","raw_affiliation_strings":["College of Computer Science and Electronic Engineering , Hunan University, Changsha, China","Peng Cheng Lab , Shenzhen, China","School of Computer Science , National University of Defense Technology, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering , Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"Peng Cheng Lab , Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]},{"raw_affiliation_string":"School of Computer Science , National University of Defense Technology, Changsha, China","institution_ids":["https://openalex.org/I170215575"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5108008219"],"corresponding_institution_ids":["https://openalex.org/I16609230","https://openalex.org/I170215575","https://openalex.org/I4210136793"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.8831,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.90981047,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"23","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/structural-variation","display_name":"Structural variation","score":0.7527379989624023},{"id":"https://openalex.org/keywords/pathogenicity","display_name":"Pathogenicity","score":0.6452864408493042},{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"Copy-number variation","score":0.5397425889968872},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5106566548347473},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.49270108342170715},{"id":"https://openalex.org/keywords/matthews-correlation-coefficient","display_name":"Matthews correlation coefficient","score":0.43351513147354126},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.43049943447113037},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42981940507888794},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42251744866371155},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4173389673233032},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3736586570739746},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35421186685562134},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.30198508501052856},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.15686306357383728}],"concepts":[{"id":"https://openalex.org/C151020129","wikidata":"https://www.wikidata.org/wiki/Q7625067","display_name":"Structural variation","level":4,"score":0.7527379989624023},{"id":"https://openalex.org/C64502627","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogenicity","level":2,"score":0.6452864408493042},{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.5397425889968872},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5106566548347473},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.49270108342170715},{"id":"https://openalex.org/C164085508","wikidata":"https://www.wikidata.org/wiki/Q4811327","display_name":"Matthews correlation coefficient","level":3,"score":0.43351513147354126},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.43049943447113037},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42981940507888794},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42251744866371155},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4173389673233032},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3736586570739746},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35421186685562134},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.30198508501052856},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.15686306357383728},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac014","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbac014/42806453/bbac014.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35180781","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35180781","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbac014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac014","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbac014/42806453/bbac014.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions","score":0.6899999976158142}],"awards":[{"id":"https://openalex.org/G1023956961","display_name":null,"funder_award_id":"JH20199142034","funder_id":"https://openalex.org/F4320327081","funder_display_name":"Science and Technology Bureau, Changsha"},{"id":"https://openalex.org/G1328409166","display_name":null,"funder_award_id":"61625202","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1736771517","display_name":null,"funder_award_id":"JZ20195242029","funder_id":"https://openalex.org/F4320327081","funder_display_name":"Science and Technology Bureau, Changsha"},{"id":"https://openalex.org/G2444451036","display_name":null,"funder_award_id":"2017YFB0202104","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3414779823","display_name":null,"funder_award_id":"2016YFB0200400","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3535329794","display_name":null,"funder_award_id":"2016YFB0200400","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3788934904","display_name":null,"funder_award_id":"2018YFC0910405","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4111034471","display_name":null,"funder_award_id":"U1435222","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5048933559","display_name":null,"funder_award_id":"Z202069420652","funder_id":"https://openalex.org/F4320327081","funder_display_name":"Science and Technology Bureau, Changsha"},{"id":"https://openalex.org/G512176667","display_name":"\u9762\u5411\u57ce\u5e02\u8ba1\u7b97\u7684\u534f\u4f5c\u8ba4\u77e5\u65e0\u7ebf\u7535\u7f51\u7edc\u8d44\u6e90\u4f18\u5316\u7406\u8bba\u4e0e\u5173\u952e\u6280\u672f\u7814\u7a76","funder_award_id":"61272056","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5631792370","display_name":null,"funder_award_id":"61772543","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5700808997","display_name":null,"funder_award_id":"2016B090918122","funder_id":"https://openalex.org/F4320326279","funder_display_name":"Department of Education of Guangdong Province"},{"id":"https://openalex.org/G6108818243","display_name":null,"funder_award_id":"2017YFB0202602","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6579822845","display_name":null,"funder_award_id":"2017YFB0202104","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6593862345","display_name":null,"funder_award_id":"2018YFC0910405","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7241573085","display_name":null,"funder_award_id":"2017YFC1311003","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7572661501","display_name":null,"funder_award_id":"2016YFC1302500","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8013132734","display_name":null,"funder_award_id":"kq2004010","funder_id":"https://openalex.org/F4320327081","funder_display_name":"Science and Technology Bureau, Changsha"},{"id":"https://openalex.org/G8028094890","display_name":null,"funder_award_id":"U19A2067","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G837820302","display_name":null,"funder_award_id":"2016B090918122","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8486657479","display_name":null,"funder_award_id":"2016B090918122","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8955152622","display_name":null,"funder_award_id":"2020JJ2009","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320326279","display_name":"Department of Education of Guangdong Province","ror":null},{"id":"https://openalex.org/F4320326871","display_name":"State Key Laboratory of Chemo/Biosensing and Chemometrics","ror":null},{"id":"https://openalex.org/F4320327081","display_name":"Science and Technology Bureau, Changsha","ror":null},{"id":"https://openalex.org/F4320330356","display_name":"Distinguished Young Scholar Foundation of Hunan Province","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4206693666.pdf","grobid_xml":"https://content.openalex.org/works/W4206693666.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W1596020785","https://openalex.org/W1669302834","https://openalex.org/W1678356000","https://openalex.org/W1912672559","https://openalex.org/W1925054293","https://openalex.org/W1973067702","https://openalex.org/W1984068087","https://openalex.org/W2011582941","https://openalex.org/W2036841261","https://openalex.org/W2038473742","https://openalex.org/W2059145105","https://openalex.org/W2076154138","https://openalex.org/W2083870688","https://openalex.org/W2099564671","https://openalex.org/W2100867326","https://openalex.org/W2106306904","https://openalex.org/W2106578986","https://openalex.org/W2122732537","https://openalex.org/W2145191876","https://openalex.org/W2150131459","https://openalex.org/W2160344363","https://openalex.org/W2160995259","https://openalex.org/W2164004777","https://openalex.org/W2166657289","https://openalex.org/W2171777347","https://openalex.org/W2195303995","https://openalex.org/W2256016639","https://openalex.org/W2257370818","https://openalex.org/W2259938310","https://openalex.org/W2282233204","https://openalex.org/W2417483443","https://openalex.org/W2511281583","https://openalex.org/W2521967673","https://openalex.org/W2535426958","https://openalex.org/W2556805640","https://openalex.org/W2563455439","https://openalex.org/W2595351638","https://openalex.org/W2625862723","https://openalex.org/W2720897370","https://openalex.org/W2771599286","https://openalex.org/W2951504154","https://openalex.org/W2955065634","https://openalex.org/W2990435446","https://openalex.org/W3012114135","https://openalex.org/W3014623641","https://openalex.org/W3028710516","https://openalex.org/W3029661147","https://openalex.org/W3045143113","https://openalex.org/W3098638684","https://openalex.org/W3100779556","https://openalex.org/W3107322429","https://openalex.org/W3108155943","https://openalex.org/W3115098477","https://openalex.org/W3116524082","https://openalex.org/W3154646048","https://openalex.org/W4231699911","https://openalex.org/W6637404493","https://openalex.org/W6638643671","https://openalex.org/W6675124317","https://openalex.org/W6679745481","https://openalex.org/W6739727275","https://openalex.org/W6760473910","https://openalex.org/W6785379209","https://openalex.org/W6786977640"],"related_works":["https://openalex.org/W3134412476","https://openalex.org/W2005276393","https://openalex.org/W2160911017","https://openalex.org/W2091911799","https://openalex.org/W3005131427","https://openalex.org/W2029233263","https://openalex.org/W2142819802","https://openalex.org/W2465436886","https://openalex.org/W2072462056","https://openalex.org/W1526237818"],"abstract_inverted_index":{"Although":[0],"there":[1,15],"are":[2,175],"a":[3,17,32,144,165,241],"large":[4],"number":[5],"of":[6,12,19,40,55,134,207,222],"structural":[7,45,60,71,115,166,173,208,227,238],"variations":[8,46,72,174,239],"in":[9,49,63,159,202,214,240],"the":[10,38,64,94,104,125,131,154,160,204,219,233],"chromosomes":[11],"each":[13,59,114],"individual,":[14],"is":[16,199],"lack":[18],"more":[20],"accurate":[21],"methods":[22],"for":[23,58,113],"identifying":[24],"clinical":[25,205,215,220],"pathogenic":[26,179],"variants.":[27,209],"Here,":[28],"we":[29,68,100,118,142],"proposed":[30],"SVPath,":[31],"machine":[33,149],"learning-based":[34],"method":[35],"to":[36,163,217,231],"predict":[37,218],"pathogenicity":[39,168,206,224],"deletions,":[41,155],"insertions":[42,156],"and":[43,80,108,136,152,157,193,225,237],"duplications":[44,158],"that":[47,185],"occur":[48],"exons.":[50],"We":[51],"constructed":[52,109],"three":[53],"types":[54],"annotation":[56,111],"features":[57,112,122],"variation":[61,105,135,167],"event":[62],"ClinVar":[65,161],"database.":[66],"First,":[67],"treated":[69],"complex":[70],"as":[73,93,128,178,230],"multiple":[74],"consecutive":[75],"single":[76,88],"nucleotide":[77],"polymorphisms":[78],"events,":[79],"annotated":[81],"them":[82],"with":[83],"correlation":[84],"scores":[85],"based":[86,123],"on":[87,96,124],"nucleic":[89],"acid":[90],"substitutions,":[91],"such":[92,127],"impact":[95],"protein":[97],"function.":[98],"Second,":[99],"determined":[101],"which":[102],"genes":[103],"occurred":[106],"in,":[107],"gene-based":[110],"variation.":[116],"Third,":[117],"also":[119],"calculated":[120],"related":[121],"transcriptome,":[126],"histone":[129],"signal,":[130],"overlap":[132],"ratio":[133],"genomic":[137],"element":[138],"definitions,":[139],"etc.":[140],"Finally,":[141],"employed":[143],"gradient":[145],"boosting":[146],"decision":[147],"tree":[148],"learning":[150],"method,":[151],"used":[153,213],"database":[162],"train":[164],"prediction":[169],"model":[170],"SVPath.":[171],"These":[172],"clearly":[176],"indicated":[177],"or":[180],"benign.":[181],"Experimental":[182],"results":[183],"show":[184],"our":[186],"SVPath":[187,198,210],"has":[188],"achieved":[189],"excellent":[190],"predictive":[191],"performance":[192],"outperforms":[194],"existing":[195],"state-of-the-art":[196],"tools.":[197],"very":[200],"promising":[201],"evaluating":[203],"can":[211],"be":[212],"research":[216],"significance":[221],"unknown":[223],"new":[226],"variation,":[228],"so":[229],"explore":[232],"relationship":[234],"between":[235],"diseases":[236],"computational":[242],"way.":[243]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
