{"id":"https://openalex.org/W4205736070","doi":"https://doi.org/10.1093/bib/bbab589","title":"Predicting miRNA\u2013disease associations based on graph random propagation network and attention network","display_name":"Predicting miRNA\u2013disease associations based on graph random propagation network and attention network","publication_year":2021,"publication_date":"2021-12-22","ids":{"openalex":"https://openalex.org/W4205736070","doi":"https://doi.org/10.1093/bib/bbab589","pmid":"https://pubmed.ncbi.nlm.nih.gov/35079767"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab589","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab589","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039673903","display_name":"Tangbo Zhong","orcid":"https://orcid.org/0000-0002-8203-0443"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tangbo Zhong","raw_affiliation_strings":["Engineering Research Center of Mine Digitalization of Ministry of Education, China University of Mining and Technology, Xuzhou, China","School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China"],"raw_orcid":"https://orcid.org/0000-0002-8203-0443","affiliations":[{"raw_affiliation_string":"Engineering Research Center of Mine Digitalization of Ministry of Education, China University of Mining and Technology, Xuzhou, China","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100734156","display_name":"Zhengwei Li","orcid":"https://orcid.org/0000-0003-1644-1006"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhengwei Li","raw_affiliation_strings":["Engineering Research Center of Mine Digitalization of Ministry of Education, China University of Mining and Technology, Xuzhou, China","School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China"],"raw_orcid":"https://orcid.org/0000-0003-1644-1006","affiliations":[{"raw_affiliation_string":"Engineering Research Center of Mine Digitalization of Ministry of Education, China University of Mining and Technology, Xuzhou, China","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101948619","display_name":"Ru Nie","orcid":"https://orcid.org/0000-0003-4729-167X"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ru Nie","raw_affiliation_strings":["School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101478660","display_name":"Huan Zhao","orcid":"https://orcid.org/0000-0002-0320-8718"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huan Zhao","raw_affiliation_strings":["Engineering Research Center of Mine Digitalization of Ministry of Education, China University of Mining and Technology, Xuzhou, China","School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Mine Digitalization of Ministry of Education, China University of Mining and Technology, Xuzhou, China","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, China","institution_ids":["https://openalex.org/I25757504"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5019805735","https://openalex.org/A5100734156","https://openalex.org/A5101948619"],"corresponding_institution_ids":["https://openalex.org/I17145004","https://openalex.org/I25757504"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.1497,"has_fulltext":false,"cited_by_count":50,"citation_normalized_percentile":{"value":0.93574707,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"23","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6885179281234741},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.6658703088760376},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5135793685913086},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5051899552345276},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4331004023551941},{"id":"https://openalex.org/keywords/random-graph","display_name":"Random graph","score":0.42882007360458374},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25947606563568115},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20332029461860657},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.18866810202598572},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12923875451087952},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.11408522725105286},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11230278015136719}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6885179281234741},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.6658703088760376},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5135793685913086},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5051899552345276},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4331004023551941},{"id":"https://openalex.org/C47458327","wikidata":"https://www.wikidata.org/wiki/Q910404","display_name":"Random graph","level":3,"score":0.42882007360458374},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25947606563568115},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20332029461860657},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.18866810202598572},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12923875451087952},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.11408522725105286},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11230278015136719}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab589","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab589","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35079767","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35079767","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.8199999928474426,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1851553357","display_name":null,"funder_award_id":"61873270","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G579333840","display_name":"\u57fa\u4e8e\u591a\u6e90\u6570\u636e\u878d\u5408\u7684\u836f\u7269\u54cd\u5e94\u548c\u836f\u7269\u76f8\u5173\u975e\u7f16\u7801RNA\u9776\u70b9\u9884\u6d4b\u7814\u7a76","funder_award_id":"61972399","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7970487852","display_name":null,"funder_award_id":"2018AAA0100100","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1569955072","https://openalex.org/W1597595254","https://openalex.org/W1967087625","https://openalex.org/W1992598298","https://openalex.org/W2047535851","https://openalex.org/W2126619650","https://openalex.org/W2128768066","https://openalex.org/W2130354913","https://openalex.org/W2131496849","https://openalex.org/W2141222510","https://openalex.org/W2145021085","https://openalex.org/W2158135353","https://openalex.org/W2162224376","https://openalex.org/W2315205689","https://openalex.org/W2410390867","https://openalex.org/W2590831403","https://openalex.org/W2601934706","https://openalex.org/W2609468276","https://openalex.org/W2765907185","https://openalex.org/W2795540478","https://openalex.org/W2895035285","https://openalex.org/W2902400385","https://openalex.org/W2944931926","https://openalex.org/W3033736933","https://openalex.org/W3048858802","https://openalex.org/W3093634254","https://openalex.org/W3100545798","https://openalex.org/W3128906305","https://openalex.org/W3139418566","https://openalex.org/W3146565636","https://openalex.org/W3155403258","https://openalex.org/W3157330827","https://openalex.org/W3185009863","https://openalex.org/W3195247250","https://openalex.org/W4253519643","https://openalex.org/W4285723986","https://openalex.org/W6749595737","https://openalex.org/W6784289646","https://openalex.org/W6790253061","https://openalex.org/W7074169957"],"related_works":["https://openalex.org/W2737319532","https://openalex.org/W3151405604","https://openalex.org/W2565797512","https://openalex.org/W2050308539","https://openalex.org/W2793648706","https://openalex.org/W2019096591","https://openalex.org/W3032012916","https://openalex.org/W3043187607","https://openalex.org/W1744006947","https://openalex.org/W4243758701"],"abstract_inverted_index":{"Numerous":[0],"experiments":[1],"have":[2],"demonstrated":[3],"that":[4,190],"abnormal":[5],"expression":[6],"of":[7,18,23,32,51,108,122,137,146,168,182,195],"microRNAs":[8],"(miRNAs)":[9],"in":[10,110],"organisms":[11],"is":[12,175],"often":[13],"accompanied":[14],"by":[15,140,157,206],"the":[16,27,49,56,62,82,90,106,111,120,130,135,142,166,196,214],"emergence":[17],"specific":[19,33],"diseases.":[20,34],"The":[21,162],"research":[22,31,50],"miRNAs":[24,43,199],"can":[25,217],"promote":[26],"prevention":[28],"and":[29,44,113,124,148,186,193,208],"drug":[30],"However,":[35],"there":[36],"are":[37,155,204],"still":[38],"many":[39],"undiscovered":[40],"links":[41],"between":[42],"diseases,":[45],"which":[46],"greatly":[47],"limits":[48],"miRNAs.":[52],"Therefore,":[53],"for":[54],"exploring":[55],"unknown":[57],"miRNA-disease":[58,83,91,96,152,226],"associations,":[59],"we":[60,87,100,128],"combine":[61],"graph":[63,93,112],"random":[64,138],"propagation":[65,116,139],"network":[66,72],"based":[67,94,171],"on":[68,95,172,177],"DropFeature":[69,102],"with":[70,201],"attention":[71,131],"to":[73,80,103,118,133,224],"propose":[74],"a":[75,158,221],"novel":[76],"deep":[77],"learning":[78],"model":[79,170,216],"predict":[81],"associations":[84],"(GRPAMDA).":[85],"Specifically,":[86],"firstly":[88],"construct":[89],"heterogeneous":[92],"association":[97,153],"information.":[98],"Secondly,":[99],"adopt":[101],"randomly":[104],"delete":[105],"features":[107,121,136,145],"nodes":[109],"then":[114],"perform":[115],"operations":[117],"enhance":[119],"miRNA":[123,147],"disease":[125,149],"nodes.":[126,150],"Thirdly,":[127],"employ":[129],"mechanism":[132],"fuse":[134],"aggregating":[141],"enhanced":[143],"neighbor":[144],"Finally,":[151],"scores":[154],"generated":[156],"fully":[159],"connected":[160],"layer.":[161],"average":[163],"area":[164],"under":[165],"curve":[167],"GRPAMDA":[169,215],"5-fold":[173],"cross-validation":[174],"93.46%":[176],"HMDD":[178],"v2.0.":[179],"Case":[180],"studies":[181],"esophageal":[183],"tumors,":[184],"lymphomas":[185],"prostate":[187],"tumors":[188],"show":[189],"48,":[191],"47":[192],"46":[194],"top":[197],"50":[198],"associated":[200],"these":[202],"diseases":[203],"confirmed":[205],"dbDEMC":[207],"miR2Disease":[209],"database,":[210],"respectively.":[211],"In":[212],"short,":[213],"be":[218],"used":[219],"as":[220],"valuable":[222],"method":[223],"study":[225],"associations.":[227]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":12}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
