{"id":"https://openalex.org/W4205089140","doi":"https://doi.org/10.1093/bib/bbab585","title":"Analysis of cancer omics data: a selective review of statistical techniques","display_name":"Analysis of cancer omics data: a selective review of statistical techniques","publication_year":2021,"publication_date":"2021-12-21","ids":{"openalex":"https://openalex.org/W4205089140","doi":"https://doi.org/10.1093/bib/bbab585","pmid":"https://pubmed.ncbi.nlm.nih.gov/35039832"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab585","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab585","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088995704","display_name":"Chenjin Ma","orcid":"https://orcid.org/0000-0002-2483-2309"},"institutions":[{"id":"https://openalex.org/I37796252","display_name":"Beijing University of Technology","ror":"https://ror.org/037b1pp87","country_code":"CN","type":"education","lineage":["https://openalex.org/I37796252"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenjin Ma","raw_affiliation_strings":["College of Statistics and Data Science, Faculty of Science, Beijing University of Technology, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Statistics and Data Science, Faculty of Science, Beijing University of Technology, Beijing, China","institution_ids":["https://openalex.org/I37796252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031082473","display_name":"Mengyun Wu","orcid":"https://orcid.org/0000-0002-0970-4712"},"institutions":[{"id":"https://openalex.org/I181679659","display_name":"Shanghai University of Finance and Economics","ror":"https://ror.org/00wtvfq62","country_code":"CN","type":"education","lineage":["https://openalex.org/I181679659"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengyun Wu","raw_affiliation_strings":["School of Statistics and Management, Shanghai University of Finance and Economics, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Statistics and Management, Shanghai University of Finance and Economics, Shanghai, China","institution_ids":["https://openalex.org/I181679659"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070916971","display_name":"Shuangge Ma","orcid":"https://orcid.org/0000-0001-9001-4999"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Shuangge Ma","raw_affiliation_strings":["Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA"],"raw_orcid":"https://orcid.org/0000-0001-9001-4999","affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5070916971"],"corresponding_institution_ids":["https://openalex.org/I32971472"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.8955,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.7358837,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"23","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/intuition","display_name":"Intuition","score":0.5866974592208862},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.5362870693206787},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5352448225021362},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5303424596786499},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.5145284533500671},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.41017472743988037},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3335723280906677},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.30183473229408264},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1697406768798828},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13795968890190125},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.10459119081497192},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.09306144714355469}],"concepts":[{"id":"https://openalex.org/C132010649","wikidata":"https://www.wikidata.org/wiki/Q189222","display_name":"Intuition","level":2,"score":0.5866974592208862},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.5362870693206787},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5352448225021362},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5303424596786499},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.5145284533500671},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.41017472743988037},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3335723280906677},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.30183473229408264},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1697406768798828},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13795968890190125},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.10459119081497192},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.09306144714355469},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab585","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab585","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35039832","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35039832","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":149,"referenced_works":["https://openalex.org/W1471053043","https://openalex.org/W1601337698","https://openalex.org/W1773550212","https://openalex.org/W1807984730","https://openalex.org/W1845837337","https://openalex.org/W1872509943","https://openalex.org/W1964305071","https://openalex.org/W1965125844","https://openalex.org/W1966327575","https://openalex.org/W1967123102","https://openalex.org/W1968793720","https://openalex.org/W1978285162","https://openalex.org/W1980548655","https://openalex.org/W1984582742","https://openalex.org/W1987371344","https://openalex.org/W1987776395","https://openalex.org/W1993528080","https://openalex.org/W1994414574","https://openalex.org/W1996838604","https://openalex.org/W1998977949","https://openalex.org/W2005732955","https://openalex.org/W2005895632","https://openalex.org/W2008529876","https://openalex.org/W2015696818","https://openalex.org/W2027895157","https://openalex.org/W2030678916","https://openalex.org/W2037559873","https://openalex.org/W2038082462","https://openalex.org/W2049228615","https://openalex.org/W2054000500","https://openalex.org/W2054596996","https://openalex.org/W2060705109","https://openalex.org/W2060987350","https://openalex.org/W2063575312","https://openalex.org/W2067727760","https://openalex.org/W2067769612","https://openalex.org/W2070412833","https://openalex.org/W2071832153","https://openalex.org/W2074973972","https://openalex.org/W2082562176","https://openalex.org/W2083607783","https://openalex.org/W2092019667","https://openalex.org/W2095763169","https://openalex.org/W2097834668","https://openalex.org/W2101432452","https://openalex.org/W2111168053","https://openalex.org/W2114060717","https://openalex.org/W2118069309","https://openalex.org/W2120160881","https://openalex.org/W2124007391","https://openalex.org/W2128040385","https://openalex.org/W2130410032","https://openalex.org/W2130986315","https://openalex.org/W2132555912","https://openalex.org/W2135046866","https://openalex.org/W2135255500","https://openalex.org/W2135964318","https://openalex.org/W2137317896","https://openalex.org/W2138019504","https://openalex.org/W2138049103","https://openalex.org/W2139549071","https://openalex.org/W2140514146","https://openalex.org/W2142972916","https://openalex.org/W2143778205","https://openalex.org/W2152135248","https://openalex.org/W2154884142","https://openalex.org/W2156480383","https://openalex.org/W2158990108","https://openalex.org/W2159408247","https://openalex.org/W2163675951","https://openalex.org/W2168113705","https://openalex.org/W2168561598","https://openalex.org/W2169103656","https://openalex.org/W2171115585","https://openalex.org/W2297689156","https://openalex.org/W2337125453","https://openalex.org/W2341128841","https://openalex.org/W2341504574","https://openalex.org/W2494474175","https://openalex.org/W2562098713","https://openalex.org/W2586275266","https://openalex.org/W2589442816","https://openalex.org/W2603756957","https://openalex.org/W2606231487","https://openalex.org/W2624021832","https://openalex.org/W2625298147","https://openalex.org/W2750367950","https://openalex.org/W2766560177","https://openalex.org/W2766879793","https://openalex.org/W2767593474","https://openalex.org/W2778586139","https://openalex.org/W2790686231","https://openalex.org/W2791015340","https://openalex.org/W2794922249","https://openalex.org/W2795989238","https://openalex.org/W2797300906","https://openalex.org/W2883439616","https://openalex.org/W2886114675","https://openalex.org/W2886701369","https://openalex.org/W2893880892","https://openalex.org/W2895397838","https://openalex.org/W2895654791","https://openalex.org/W2897971552","https://openalex.org/W2903952654","https://openalex.org/W2907729062","https://openalex.org/W2913710075","https://openalex.org/W2921650138","https://openalex.org/W2922815614","https://openalex.org/W2935703330","https://openalex.org/W2947993537","https://openalex.org/W2954171789","https://openalex.org/W2962877661","https://openalex.org/W2963355185","https://openalex.org/W2964129930","https://openalex.org/W2968367627","https://openalex.org/W2971832717","https://openalex.org/W2974085428","https://openalex.org/W2980454921","https://openalex.org/W2982474113","https://openalex.org/W2983649514","https://openalex.org/W2999588008","https://openalex.org/W3008278249","https://openalex.org/W3032355325","https://openalex.org/W3038007061","https://openalex.org/W3043242675","https://openalex.org/W3047056765","https://openalex.org/W3049538209","https://openalex.org/W3082665562","https://openalex.org/W3082788671","https://openalex.org/W3084933934","https://openalex.org/W3092160932","https://openalex.org/W3093645884","https://openalex.org/W3098306969","https://openalex.org/W3099014882","https://openalex.org/W3102389945","https://openalex.org/W3102650760","https://openalex.org/W3103354362","https://openalex.org/W3104038823","https://openalex.org/W3127510653","https://openalex.org/W3174861290","https://openalex.org/W3179989220","https://openalex.org/W3199213843","https://openalex.org/W4211205251","https://openalex.org/W4238248666","https://openalex.org/W4247571494","https://openalex.org/W6684653394","https://openalex.org/W6735971188","https://openalex.org/W6747592895","https://openalex.org/W6750287097"],"related_works":["https://openalex.org/W2364252372","https://openalex.org/W4234066492","https://openalex.org/W1998063895","https://openalex.org/W1967044713","https://openalex.org/W2133470120","https://openalex.org/W3195112886","https://openalex.org/W4389089607","https://openalex.org/W3195480349","https://openalex.org/W2892201447","https://openalex.org/W2590543013"],"abstract_inverted_index":{"Cancer":[0],"is":[1,67],"an":[2],"omics":[3,28,83],"disease.":[4],"The":[5,62],"development":[6],"in":[7,44,76],"high-throughput":[8],"profiling":[9],"has":[10,30],"fundamentally":[11],"changed":[12],"cancer":[13,70,82],"research":[14],"and":[15,22,35,95,98,113,121,135],"clinical":[16],"practice.":[17],"Compared":[18],"with":[19,50,72],"clinical,":[20],"demographic":[21],"environmental":[23],"data,":[24],"the":[25,45,78,102],"analysis":[26,134],"of":[27,64,81],"data-which":[29],"higher":[31],"dimensionality,":[32],"weaker":[33],"signals":[34],"more":[36,41],"complex":[37],"distributional":[38],"properties-is":[39],"much":[40],"challenging.":[42],"Developments":[43],"literature":[46],"are":[47],"often":[48],"'scattered',":[49],"individual":[51],"studies":[52],"focused":[53],"on":[54,92],"one":[55],"or":[56],"a":[57],"few":[58],"closely":[59],"related":[60],"methods.":[61],"goal":[63],"this":[65],"review":[66,109],"to":[68,101],"assist":[69],"researchers":[71],"limited":[73],"statistical":[74],"expertise":[75],"establishing":[77],"'overall":[79],"framework'":[80],"data":[84],"analysis.":[85,123,137],"To":[86],"facilitate":[87],"understanding,":[88],"we":[89],"mainly":[90],"focus":[91],"intuition,":[93],"concepts":[94],"key":[96],"steps,":[97],"refer":[99],"readers":[100],"original":[103],"publications":[104],"for":[105],"mathematical":[106],"details.":[107],"This":[108],"broadly":[110],"covers":[111],"unsupervised":[112],"supervised":[114],"analysis,":[115,132],"as":[116,118],"well":[117],"individual-gene-based,":[119],"gene-set-based":[120],"gene-network-based":[122],"We":[124],"also":[125],"briefly":[126],"discuss":[127],"'special":[128],"topics'":[129],"including":[130],"interaction":[131],"multi-datasets":[133],"multi-omics":[136]},"counts_by_year":[{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
