{"id":"https://openalex.org/W4205923645","doi":"https://doi.org/10.1093/bib/bbab571","title":"MiRNA\u2013disease association prediction based on meta-paths","display_name":"MiRNA\u2013disease association prediction based on meta-paths","publication_year":2021,"publication_date":"2021-12-13","ids":{"openalex":"https://openalex.org/W4205923645","doi":"https://doi.org/10.1093/bib/bbab571","pmid":"https://pubmed.ncbi.nlm.nih.gov/35018405"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab571","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab571","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054977113","display_name":"Liang Yu","orcid":"https://orcid.org/0000-0002-8351-3332"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Liang Yu","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an 710071, P.R. China"],"raw_orcid":"https://orcid.org/0000-0002-8351-3332","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an 710071, P.R. China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004130985","display_name":"Yujia Zheng","orcid":"https://orcid.org/0009-0003-5225-6366"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yujia Zheng","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an 710071, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an 710071, P.R. China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060109811","display_name":"Lin Gao","orcid":"https://orcid.org/0000-0001-6396-0787"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Gao","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an 710071, P.R. China"],"raw_orcid":"https://orcid.org/0000-0001-6396-0787","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an 710071, P.R. China","institution_ids":["https://openalex.org/I149594827"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5054977113"],"corresponding_institution_ids":["https://openalex.org/I149594827"],"apc_list":{"value":3894,"currency":"USD","value_usd":3894},"apc_paid":null,"fwci":3.1684,"has_fulltext":false,"cited_by_count":42,"citation_normalized_percentile":{"value":0.93929582,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"23","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.5583869814872742},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5405892133712769},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4970226585865021},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4768834710121155},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.43484798073768616},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.4293791651725769},{"id":"https://openalex.org/keywords/feature-vector","display_name":"Feature vector","score":0.4177643656730652},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41453659534454346},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2427162230014801},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2276638150215149},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2257404923439026},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19033324718475342},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.095333993434906},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06890106201171875}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.5583869814872742},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5405892133712769},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4970226585865021},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4768834710121155},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.43484798073768616},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.4293791651725769},{"id":"https://openalex.org/C83665646","wikidata":"https://www.wikidata.org/wiki/Q42139305","display_name":"Feature vector","level":2,"score":0.4177643656730652},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41453659534454346},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2427162230014801},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2276638150215149},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2257404923439026},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19033324718475342},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.095333993434906},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06890106201171875},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab571","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab571","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35018405","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35018405","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.7699999809265137}],"awards":[{"id":"https://openalex.org/G2734538976","display_name":null,"funder_award_id":"62132015","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G375568310","display_name":"\u57fa\u4e8e\u591a\u7ec4\u5b66\u6570\u636e\u878d\u5408\u7684\u675c\u6c0f\u808c\u8425\u517b\u4e0d\u826f\u6f5c\u5728\u836f\u7269\u9884\u6d4b\u65b9\u6cd5\u7814\u7a76","funder_award_id":"62072353","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W1808822296","https://openalex.org/W1943923304","https://openalex.org/W1964852028","https://openalex.org/W1972719937","https://openalex.org/W1987925433","https://openalex.org/W2014946489","https://openalex.org/W2020072428","https://openalex.org/W2022732522","https://openalex.org/W2046403515","https://openalex.org/W2064606403","https://openalex.org/W2074495305","https://openalex.org/W2084645564","https://openalex.org/W2091415346","https://openalex.org/W2096100878","https://openalex.org/W2103151642","https://openalex.org/W2128768066","https://openalex.org/W2132694427","https://openalex.org/W2141222510","https://openalex.org/W2145920293","https://openalex.org/W2146292498","https://openalex.org/W2147807172","https://openalex.org/W2158135353","https://openalex.org/W2159449649","https://openalex.org/W2181996424","https://openalex.org/W2269556490","https://openalex.org/W2396275856","https://openalex.org/W2502754259","https://openalex.org/W2568840359","https://openalex.org/W2601934706","https://openalex.org/W2609468276","https://openalex.org/W2735278091","https://openalex.org/W2766935102","https://openalex.org/W2773306141","https://openalex.org/W2781702232","https://openalex.org/W2799307902","https://openalex.org/W2885575853","https://openalex.org/W2901099963","https://openalex.org/W2901754076","https://openalex.org/W2903321785","https://openalex.org/W2910465896","https://openalex.org/W2974159611","https://openalex.org/W2975625638","https://openalex.org/W2976262099","https://openalex.org/W2983166786","https://openalex.org/W2988141971","https://openalex.org/W2989670486","https://openalex.org/W2990587074","https://openalex.org/W3004966134","https://openalex.org/W3008014363","https://openalex.org/W3011333216","https://openalex.org/W3025757222","https://openalex.org/W3034348048","https://openalex.org/W3072729871","https://openalex.org/W3082513089","https://openalex.org/W3116452748","https://openalex.org/W3120946081","https://openalex.org/W3128972055","https://openalex.org/W3135521497","https://openalex.org/W3193665752","https://openalex.org/W4246271082","https://openalex.org/W4246698901","https://openalex.org/W6655994215","https://openalex.org/W6689068738","https://openalex.org/W6693845543","https://openalex.org/W6741047381","https://openalex.org/W6767944931"],"related_works":["https://openalex.org/W2737319532","https://openalex.org/W3151405604","https://openalex.org/W2565797512","https://openalex.org/W2050308539","https://openalex.org/W2793648706","https://openalex.org/W3043187607","https://openalex.org/W2019096591","https://openalex.org/W3032012916","https://openalex.org/W1744006947","https://openalex.org/W4243758701"],"abstract_inverted_index":{"Since":[0],"miRNAs":[1,141,174],"can":[2,194],"participate":[3],"in":[4],"the":[5,16,65,70,72,80,89,93,97,102,125,130,137,167,176],"posttranscriptional":[6],"regulation":[7],"of":[8,18,92,134],"gene":[9],"expression,":[10],"they":[11],"may":[12],"provide":[13],"ideas":[14],"for":[15,25,69,142,161,184],"development":[17],"new":[19,23,185],"drugs":[20],"or":[21,28],"become":[22],"biomarkers":[24],"drug":[26],"targets":[27],"disease":[29,112],"diagnosis.":[30],"In":[31],"this":[32],"work,":[33],"we":[34,164],"propose":[35],"an":[36,46],"miRNA-disease":[37],"association":[38],"prediction":[39],"method":[40],"based":[41],"on":[42,79,104],"meta-paths":[43,56,106],"(MDPBMP).":[44],"First,":[45],"miRNA-disease-gene":[47],"heterogeneous":[48],"information":[49,74,99],"network":[50],"was":[51],"constructed,":[52],"and":[53,85,111,149,155,173,200],"seven":[54],"symmetrical":[55],"were":[57],"defined":[58],"according":[59],"to":[60,87,118],"different":[61,105],"semantics.":[62],"After":[63],"constructing":[64],"initial":[66],"feature":[67,90,114],"vector":[68,73,91,98],"node,":[71],"carried":[75],"by":[76,101],"all":[77,166],"nodes":[78,103],"meta-path":[81],"instance":[82],"is":[83,107],"extracted":[84],"aggregated":[86],"update":[88],"starting":[94],"node.":[95],"Then,":[96],"obtained":[100,129],"aggregated.":[108],"Finally,":[109],"miRNA":[110,190],"embedding":[113],"vectors":[115],"are":[116,202],"used":[117],"calculate":[119],"their":[120,196],"associated":[121],"scores.":[122],"Compared":[123],"with":[124],"other":[126],"methods,":[127],"MDPBMP":[128],"highest":[131],"AUC":[132],"value":[133],"0.9214.":[135],"Among":[136],"top":[138],"50":[139,156],"predicted":[140],"lung":[143],"neoplasms,":[144,146,151,163],"esophageal":[145],"colon":[147],"neoplasms":[148,172],"breast":[150,162,171],"49,":[152],"48,":[153],"49":[154],"have":[157],"been":[158],"verified.":[159],"Furthermore,":[160],"deleted":[165],"known":[168,188],"associations":[169],"between":[170],"from":[175],"training":[177],"set.":[178],"These":[179],"results":[180],"also":[181],"show":[182],"that":[183],"diseases":[186],"without":[187],"related":[189],"information,":[191],"our":[192],"model":[193],"predict":[195],"potential":[197],"miRNAs.":[198],"Code":[199],"data":[201],"available":[203],"at":[204],"https://github.com/LiangYu-Xidian/MDPBMP.":[205]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":6}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
