{"id":"https://openalex.org/W4205368314","doi":"https://doi.org/10.1093/bib/bbab556","title":"HNetGO: protein function prediction via heterogeneous network transformer","display_name":"HNetGO: protein function prediction via heterogeneous network transformer","publication_year":2021,"publication_date":"2021-12-06","ids":{"openalex":"https://openalex.org/W4205368314","doi":"https://doi.org/10.1093/bib/bbab556","pmid":"https://pubmed.ncbi.nlm.nih.gov/37861172"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab556","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab556","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbab556/52263157/bbab556.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/24/6/bbab556/52263157/bbab556.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101606482","display_name":"Xiaoshuai Zhang","orcid":"https://orcid.org/0000-0002-5795-8469"},"institutions":[{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoshuai Zhang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen) , Shenzhen, Guangdong 518055 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen) , Shenzhen, Guangdong 518055 , China","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061090459","display_name":"Huannan Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210135642","display_name":"Heilongjiang Academy of Land Reclamation Sciences","ror":"https://ror.org/03sv0ep05","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210135642"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huannan Guo","raw_affiliation_strings":["General Hospital of Heilongjiang Province Land Reclamation Bureau , Harbin 150086 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"General Hospital of Heilongjiang Province Land Reclamation Bureau , Harbin 150086 , China","institution_ids":["https://openalex.org/I4210135642"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074715434","display_name":"Fan Zhang","orcid":"https://orcid.org/0000-0002-6823-2700"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I4210156501","display_name":"First Affiliated Hospital of Harbin Medical University","ror":"https://ror.org/05vy2sc54","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210156501"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Zhang","raw_affiliation_strings":["Center NHC Key Laboratory of Cell Transplantation, The First Affiliated Hospital of Harbin Medical University , Harbin 150086 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center NHC Key Laboratory of Cell Transplantation, The First Affiliated Hospital of Harbin Medical University , Harbin 150086 , China","institution_ids":["https://openalex.org/I156144747","https://openalex.org/I4210156501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100328995","display_name":"Xuan Wang","orcid":"https://orcid.org/0000-0002-3512-0649"},"institutions":[{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuan Wang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen) , Shenzhen, Guangdong 518055 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen) , Shenzhen, Guangdong 518055 , China","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048567667","display_name":"Kaitao Wu","orcid":"https://orcid.org/0000-0003-4912-3346"},"institutions":[{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kaitao Wu","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen) , Shenzhen, Guangdong 518055 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen) , Shenzhen, Guangdong 518055 , China","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054449587","display_name":"Shizheng Qiu","orcid":"https://orcid.org/0000-0002-0047-4199"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shizheng Qiu","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology , Harbin 150001 , China"],"raw_orcid":"https://orcid.org/0000-0002-0047-4199","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology , Harbin 150001 , China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114377956","display_name":"Bo Liu","orcid":"https://orcid.org/0000-0003-1685-7968"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Liu","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology , Harbin 150001 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology , Harbin 150001 , China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100392447","display_name":"Yadong Wang","orcid":"https://orcid.org/0000-0001-6500-6217"},"institutions":[{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yadong Wang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen) , Shenzhen, Guangdong 518055 , China","School of Computer Science and Technology, Harbin Institute of Technology , Harbin 150001 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen) , Shenzhen, Guangdong 518055 , China","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology , Harbin 150001 , China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037178137","display_name":"Yang Hu","orcid":"https://orcid.org/0000-0002-4508-5365"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Hu","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology , Harbin 150001 , China"],"raw_orcid":"https://orcid.org/0000-0002-4508-5365","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology , Harbin 150001 , China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100363203","display_name":"Junyi Li","orcid":"https://orcid.org/0000-0001-8045-5264"},"institutions":[{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Junyi Li","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen) , Shenzhen, Guangdong 518055 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen) , Shenzhen, Guangdong 518055 , China","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100363203"],"corresponding_institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.5551,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.64724017,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"24","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.598148763179779},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.5133916139602661},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07065224647521973},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.057024359703063965}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.598148763179779},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.5133916139602661},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07065224647521973},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.057024359703063965},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbab556","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab556","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbab556/52263157/bbab556.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37861172","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37861172","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10588005","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10588005","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10588005/pdf/bbab556.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbab556","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab556","pdf_url":"https://academic.oup.com/bib/article-pdf/24/6/bbab556/52263157/bbab556.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1272614338","display_name":null,"funder_award_id":"2020B0101380001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G169353513","display_name":null,"funder_award_id":"2021YFA0910700","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2397961325","display_name":null,"funder_award_id":"82003553","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4205368314.pdf","grobid_xml":"https://content.openalex.org/works/W4205368314.grobid-xml"},"referenced_works_count":73,"referenced_works":["https://openalex.org/W1501531009","https://openalex.org/W1614298861","https://openalex.org/W1985213868","https://openalex.org/W2045204781","https://openalex.org/W2045777307","https://openalex.org/W2102461176","https://openalex.org/W2124166542","https://openalex.org/W2158714788","https://openalex.org/W2161955763","https://openalex.org/W2166985665","https://openalex.org/W2440793509","https://openalex.org/W2607941059","https://openalex.org/W2615066396","https://openalex.org/W2749122933","https://openalex.org/W2781869913","https://openalex.org/W2792533056","https://openalex.org/W2896457183","https://openalex.org/W2900569176","https://openalex.org/W2950595506","https://openalex.org/W2951282333","https://openalex.org/W2951422523","https://openalex.org/W2951433247","https://openalex.org/W2953169496","https://openalex.org/W2962739339","https://openalex.org/W2963626623","https://openalex.org/W2964339466","https://openalex.org/W2966590054","https://openalex.org/W2970597249","https://openalex.org/W2971227267","https://openalex.org/W2975585537","https://openalex.org/W2976614915","https://openalex.org/W2980502849","https://openalex.org/W2980789587","https://openalex.org/W2984274952","https://openalex.org/W2985856177","https://openalex.org/W2985961606","https://openalex.org/W2989608901","https://openalex.org/W2995514860","https://openalex.org/W2999044305","https://openalex.org/W3004817561","https://openalex.org/W3007233865","https://openalex.org/W3009548091","https://openalex.org/W3014623641","https://openalex.org/W3021170100","https://openalex.org/W3023746197","https://openalex.org/W3032843171","https://openalex.org/W3041779151","https://openalex.org/W3041832132","https://openalex.org/W3049692992","https://openalex.org/W3096599651","https://openalex.org/W3116452748","https://openalex.org/W3118936575","https://openalex.org/W3128972055","https://openalex.org/W3131121088","https://openalex.org/W3136918052","https://openalex.org/W3137270128","https://openalex.org/W3143063265","https://openalex.org/W3146944767","https://openalex.org/W3159193120","https://openalex.org/W3160988990","https://openalex.org/W3194137039","https://openalex.org/W3199428233","https://openalex.org/W4236358448","https://openalex.org/W4287724045","https://openalex.org/W4297733535","https://openalex.org/W4385245566","https://openalex.org/W6636510571","https://openalex.org/W6719819555","https://openalex.org/W6739901393","https://openalex.org/W6748634344","https://openalex.org/W6763868836","https://openalex.org/W6769886907","https://openalex.org/W6780145172"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"Protein":[0],"function":[1,38,93,149,179],"annotation":[2,94],"is":[3],"one":[4],"of":[5,15,36,56,82,123],"the":[6,13,21,34,42,54,115,120,124,152,165],"most":[7],"important":[8],"research":[9,25],"topics":[10],"for":[11],"revealing":[12],"essence":[14],"life":[16],"at":[17],"molecular":[18,178],"level":[19],"in":[20,69],"post-genome":[22],"era.":[23],"Current":[24],"shows":[26],"that":[27,169],"integrating":[28],"multisource":[29],"data":[30,68],"can":[31,138],"effectively":[32,139],"improve":[33],"performance":[35,173],"protein":[37,92,105,125,148,155],"prediction":[39],"models.":[40],"However,":[41],"heavy":[43],"reliance":[44],"on":[45,62,164,174],"complex":[46],"feature":[47],"engineering":[48],"and":[49,108,113,146,157,177],"model":[50,95,117],"integration":[51],"methods":[52],"limits":[53],"development":[55],"existing":[57,83],"methods.":[58],"Besides,":[59],"models":[60],"based":[61],"deep":[63],"learning":[64],"only":[65],"use":[66],"labeled":[67],"a":[70,79],"certain":[71],"dataset":[72,167],"to":[73,103,118],"extract":[74,119,140],"sequence":[75,85,106],"features,":[76],"thus":[77],"ignoring":[78],"large":[80],"amount":[81],"unlabeled":[84],"data.":[86],"Here,":[87],"we":[88,129],"propose":[89],"an":[90,131],"end-to-end":[91],"named":[96],"HNetGO,":[97],"which":[98,137],"innovatively":[99],"uses":[100],"heterogeneous":[101,144],"network":[102,111,135],"integrate":[104],"similarity":[107,153],"protein-protein":[109],"interaction":[110],"information":[112],"combines":[114],"pretraining":[116],"semantic":[121],"features":[122,142],"sequence.":[126],"In":[127],"addition,":[128],"design":[130],"attention-based":[132],"graph":[133],"neural":[134],"model,":[136],"node-level":[141],"from":[143],"networks":[145],"predict":[147],"by":[150],"measuring":[151],"between":[154],"nodes":[156],"gene":[158],"ontology":[159],"term":[160],"nodes.":[161],"Comparative":[162],"experiments":[163],"human":[166],"show":[168],"HNetGO":[170],"achieves":[171],"state-of-the-art":[172],"cellular":[175],"component":[176],"branches.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":7}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}