{"id":"https://openalex.org/W4206214294","doi":"https://doi.org/10.1093/bib/bbab550","title":"CRISP: a deep learning architecture for GC\u2009\u00d7\u2009GC\u2013TOFMS contour ROI identification, simulation and analysis in imaging metabolomics","display_name":"CRISP: a deep learning architecture for GC\u2009\u00d7\u2009GC\u2013TOFMS contour ROI identification, simulation and analysis in imaging metabolomics","publication_year":2021,"publication_date":"2021-11-30","ids":{"openalex":"https://openalex.org/W4206214294","doi":"https://doi.org/10.1093/bib/bbab550","pmid":"https://pubmed.ncbi.nlm.nih.gov/35022651"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab550","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab550","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbab550/42804902/bbab550.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/23/2/bbab550/42804902/bbab550.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020039833","display_name":"Vivek Bhakta Mathema","orcid":"https://orcid.org/0000-0003-3916-9949"},"institutions":[{"id":"https://openalex.org/I1332387789","display_name":"Siriraj Hospital","ror":"https://ror.org/0331zs648","country_code":"TH","type":"healthcare","lineage":["https://openalex.org/I1332387789"]},{"id":"https://openalex.org/I25399158","display_name":"Mahidol University","ror":"https://ror.org/01znkr924","country_code":"TH","type":"education","lineage":["https://openalex.org/I25399158"]}],"countries":["TH"],"is_corresponding":false,"raw_author_name":"Vivek Bhakta Mathema","raw_affiliation_strings":["Metabolomics and Systems Biology, Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","Siriraj Metabolomics and Phenomics Center, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand"],"raw_orcid":"https://orcid.org/0000-0003-3916-9949","affiliations":[{"raw_affiliation_string":"Metabolomics and Systems Biology, Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I1332387789","https://openalex.org/I25399158"]},{"raw_affiliation_string":"Siriraj Metabolomics and Phenomics Center, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I1332387789","https://openalex.org/I25399158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060402717","display_name":"Kassaporn Duangkumpha","orcid":"https://orcid.org/0000-0002-9117-6882"},"institutions":[{"id":"https://openalex.org/I1332387789","display_name":"Siriraj Hospital","ror":"https://ror.org/0331zs648","country_code":"TH","type":"healthcare","lineage":["https://openalex.org/I1332387789"]},{"id":"https://openalex.org/I25399158","display_name":"Mahidol University","ror":"https://ror.org/01znkr924","country_code":"TH","type":"education","lineage":["https://openalex.org/I25399158"]}],"countries":["TH"],"is_corresponding":false,"raw_author_name":"Kassaporn Duangkumpha","raw_affiliation_strings":["Metabolomics and Systems Biology, Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","Siriraj Metabolomics and Phenomics Center, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Metabolomics and Systems Biology, Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I1332387789","https://openalex.org/I25399158"]},{"raw_affiliation_string":"Siriraj Metabolomics and Phenomics Center, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I1332387789","https://openalex.org/I25399158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082660216","display_name":"Kwanjeera Wanichthanarak","orcid":"https://orcid.org/0000-0003-0245-0833"},"institutions":[{"id":"https://openalex.org/I1332387789","display_name":"Siriraj Hospital","ror":"https://ror.org/0331zs648","country_code":"TH","type":"healthcare","lineage":["https://openalex.org/I1332387789"]},{"id":"https://openalex.org/I25399158","display_name":"Mahidol University","ror":"https://ror.org/01znkr924","country_code":"TH","type":"education","lineage":["https://openalex.org/I25399158"]}],"countries":["TH"],"is_corresponding":false,"raw_author_name":"Kwanjeera Wanichthanarak","raw_affiliation_strings":["Metabolomics and Systems Biology, Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","Siriraj Metabolomics and Phenomics Center, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Metabolomics and Systems Biology, Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I1332387789","https://openalex.org/I25399158"]},{"raw_affiliation_string":"Siriraj Metabolomics and Phenomics Center, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I1332387789","https://openalex.org/I25399158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049919230","display_name":"Narumol Jariyasopit","orcid":"https://orcid.org/0000-0002-7702-1323"},"institutions":[{"id":"https://openalex.org/I1332387789","display_name":"Siriraj Hospital","ror":"https://ror.org/0331zs648","country_code":"TH","type":"healthcare","lineage":["https://openalex.org/I1332387789"]},{"id":"https://openalex.org/I25399158","display_name":"Mahidol University","ror":"https://ror.org/01znkr924","country_code":"TH","type":"education","lineage":["https://openalex.org/I25399158"]}],"countries":["TH"],"is_corresponding":false,"raw_author_name":"Narumol Jariyasopit","raw_affiliation_strings":["Metabolomics and Systems Biology, Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","Siriraj Metabolomics and Phenomics Center, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Metabolomics and Systems Biology, Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I1332387789","https://openalex.org/I25399158"]},{"raw_affiliation_string":"Siriraj Metabolomics and Phenomics Center, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I1332387789","https://openalex.org/I25399158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043792796","display_name":"Esha Dhakal","orcid":null},"institutions":[{"id":"https://openalex.org/I1332387789","display_name":"Siriraj Hospital","ror":"https://ror.org/0331zs648","country_code":"TH","type":"healthcare","lineage":["https://openalex.org/I1332387789"]},{"id":"https://openalex.org/I25399158","display_name":"Mahidol University","ror":"https://ror.org/01znkr924","country_code":"TH","type":"education","lineage":["https://openalex.org/I25399158"]}],"countries":["TH"],"is_corresponding":false,"raw_author_name":"Esha Dhakal","raw_affiliation_strings":["Metabolomics and Systems Biology, Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","Siriraj Metabolomics and Phenomics Center, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Metabolomics and Systems Biology, Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I1332387789","https://openalex.org/I25399158"]},{"raw_affiliation_string":"Siriraj Metabolomics and Phenomics Center, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I1332387789","https://openalex.org/I25399158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045023146","display_name":"Nuankanya Sathirapongsasuti","orcid":"https://orcid.org/0000-0002-6303-2769"},"institutions":[{"id":"https://openalex.org/I25399158","display_name":"Mahidol University","ror":"https://ror.org/01znkr924","country_code":"TH","type":"education","lineage":["https://openalex.org/I25399158"]},{"id":"https://openalex.org/I4210107674","display_name":"National Nanotechnology Center","ror":"https://ror.org/01neh8064","country_code":"TH","type":"facility","lineage":["https://openalex.org/I1332092204","https://openalex.org/I4210107674"]},{"id":"https://openalex.org/I4210140007","display_name":"Ramathibodi Hospital","ror":"https://ror.org/04884sy85","country_code":"TH","type":"healthcare","lineage":["https://openalex.org/I4210140007"]}],"countries":["TH"],"is_corresponding":false,"raw_author_name":"Nuankanya Sathirapongsasuti","raw_affiliation_strings":["Research Network of NANOTEC \u2013 MU Ramathibodi on Nanomedicine, Bangkok, Thailand","Section of Translational Medicine, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Network of NANOTEC \u2013 MU Ramathibodi on Nanomedicine, Bangkok, Thailand","institution_ids":["https://openalex.org/I4210107674"]},{"raw_affiliation_string":"Section of Translational Medicine, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand","institution_ids":["https://openalex.org/I4210140007","https://openalex.org/I25399158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084766453","display_name":"Chagriya Kitiyakara","orcid":"https://orcid.org/0000-0001-6340-3534"},"institutions":[{"id":"https://openalex.org/I4210140007","display_name":"Ramathibodi Hospital","ror":"https://ror.org/04884sy85","country_code":"TH","type":"healthcare","lineage":["https://openalex.org/I4210140007"]}],"countries":["TH"],"is_corresponding":false,"raw_author_name":"Chagriya Kitiyakara","raw_affiliation_strings":["Department of Medicine, Faculty of Medicine, Ramathibodi Hospital, Rama VI Rd., Ratchathewi, Bangkok 10400, Thailand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Faculty of Medicine, Ramathibodi Hospital, Rama VI Rd., Ratchathewi, Bangkok 10400, Thailand","institution_ids":["https://openalex.org/I4210140007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009829554","display_name":"Yongyut Sirivatanauksorn","orcid":"https://orcid.org/0000-0001-7520-8832"},"institutions":[{"id":"https://openalex.org/I1332387789","display_name":"Siriraj Hospital","ror":"https://ror.org/0331zs648","country_code":"TH","type":"healthcare","lineage":["https://openalex.org/I1332387789"]},{"id":"https://openalex.org/I25399158","display_name":"Mahidol University","ror":"https://ror.org/01znkr924","country_code":"TH","type":"education","lineage":["https://openalex.org/I25399158"]}],"countries":["TH"],"is_corresponding":false,"raw_author_name":"Yongyut Sirivatanauksorn","raw_affiliation_strings":["Siriraj Metabolomics and Phenomics Center, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Siriraj Metabolomics and Phenomics Center, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I1332387789","https://openalex.org/I25399158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049415271","display_name":"Sakda Khoomrung","orcid":"https://orcid.org/0000-0001-9461-8597"},"institutions":[{"id":"https://openalex.org/I1332387789","display_name":"Siriraj Hospital","ror":"https://ror.org/0331zs648","country_code":"TH","type":"healthcare","lineage":["https://openalex.org/I1332387789"]},{"id":"https://openalex.org/I25399158","display_name":"Mahidol University","ror":"https://ror.org/01znkr924","country_code":"TH","type":"education","lineage":["https://openalex.org/I25399158"]}],"countries":["TH"],"is_corresponding":true,"raw_author_name":"Sakda Khoomrung","raw_affiliation_strings":["Center of Excellence for Innovation in Chemistry (PERCH-CIC), Faculty of Science, Mahidol University, Bangkok, Thailand","Metabolomics and Systems Biology, Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","Siriraj Metabolomics and Phenomics Center, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand"],"raw_orcid":"https://orcid.org/0000-0001-9461-8597","affiliations":[{"raw_affiliation_string":"Center of Excellence for Innovation in Chemistry (PERCH-CIC), Faculty of Science, Mahidol University, Bangkok, Thailand","institution_ids":["https://openalex.org/I25399158"]},{"raw_affiliation_string":"Metabolomics and Systems Biology, Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I1332387789","https://openalex.org/I25399158"]},{"raw_affiliation_string":"Siriraj Metabolomics and Phenomics Center, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand","institution_ids":["https://openalex.org/I1332387789","https://openalex.org/I25399158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5049415271"],"corresponding_institution_ids":["https://openalex.org/I1332387789","https://openalex.org/I25399158"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.7327,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.6996727,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"23","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10640","display_name":"Spectroscopy and Chemometric Analyses","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1602","display_name":"Analytical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7143605351448059},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.6046433448791504},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5709003210067749},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.4582059383392334},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.45074230432510376},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4383850693702698},{"id":"https://openalex.org/keywords/pixel","display_name":"Pixel","score":0.4248022437095642},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.22654223442077637},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1449565291404724},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08187654614448547}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7143605351448059},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.6046433448791504},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5709003210067749},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.4582059383392334},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.45074230432510376},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4383850693702698},{"id":"https://openalex.org/C160633673","wikidata":"https://www.wikidata.org/wiki/Q355198","display_name":"Pixel","level":2,"score":0.4248022437095642},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.22654223442077637},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1449565291404724},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08187654614448547},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008401","descriptor_name":"Gas Chromatography-Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008401","descriptor_name":"Gas Chromatography-Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008401","descriptor_name":"Gas Chromatography-Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008401","descriptor_name":"Gas Chromatography-Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbab550","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab550","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbab550/42804902/bbab550.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35022651","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35022651","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8921635","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8921635","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbab550","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab550","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbab550/42804902/bbab550.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5878665834","display_name":null,"funder_award_id":"NRCT5-TRG63009-03","funder_id":"https://openalex.org/F4320322401","funder_display_name":"Mahidol University"},{"id":"https://openalex.org/G6693341665","display_name":null,"funder_award_id":"P-13-00505","funder_id":"https://openalex.org/F4320322437","funder_display_name":"National Science and Technology Development Agency"},{"id":"https://openalex.org/G724898389","display_name":null,"funder_award_id":"R016420001","funder_id":"https://openalex.org/F4320322401","funder_display_name":"Mahidol University"}],"funders":[{"id":"https://openalex.org/F4320322401","display_name":"Mahidol University","ror":"https://ror.org/01znkr924"},{"id":"https://openalex.org/F4320322437","display_name":"National Science and Technology Development Agency","ror":"https://ror.org/04vy95b61"},{"id":"https://openalex.org/F4320322817","display_name":"National Research Council of Thailand","ror":"https://ror.org/018wfhg78"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W418141199","https://openalex.org/W1742684074","https://openalex.org/W1975579196","https://openalex.org/W1976073433","https://openalex.org/W2015292648","https://openalex.org/W2084536719","https://openalex.org/W2133422087","https://openalex.org/W2139437500","https://openalex.org/W2139577851","https://openalex.org/W2146795245","https://openalex.org/W2524799863","https://openalex.org/W2568346436","https://openalex.org/W2605640878","https://openalex.org/W2606042658","https://openalex.org/W2610332124","https://openalex.org/W2788691904","https://openalex.org/W2794749944","https://openalex.org/W2809254203","https://openalex.org/W2897938635","https://openalex.org/W2942313777","https://openalex.org/W2963899699","https://openalex.org/W2971688562","https://openalex.org/W2980636944","https://openalex.org/W2981502071","https://openalex.org/W2988102276","https://openalex.org/W2998571806","https://openalex.org/W3003471562","https://openalex.org/W3006296545","https://openalex.org/W3011178842","https://openalex.org/W3080891686","https://openalex.org/W3087245954","https://openalex.org/W3089891425","https://openalex.org/W3102837817","https://openalex.org/W3105070630","https://openalex.org/W6671782499","https://openalex.org/W6675354045","https://openalex.org/W6676011526","https://openalex.org/W6676931166","https://openalex.org/W6679665039","https://openalex.org/W6680821396","https://openalex.org/W6680877353","https://openalex.org/W6725414459","https://openalex.org/W6748690695","https://openalex.org/W6755694560","https://openalex.org/W6758285113","https://openalex.org/W6766682867","https://openalex.org/W6772946509","https://openalex.org/W6773557064","https://openalex.org/W6775272655","https://openalex.org/W6783016264","https://openalex.org/W6785515731","https://openalex.org/W6785516977"],"related_works":["https://openalex.org/W42525420","https://openalex.org/W4283390424","https://openalex.org/W2137270828","https://openalex.org/W1976072307","https://openalex.org/W4205440119","https://openalex.org/W4210616727","https://openalex.org/W4292104203","https://openalex.org/W1561393703","https://openalex.org/W2096576371","https://openalex.org/W2049864679"],"abstract_inverted_index":{"Two-dimensional":[0],"gas":[1],"chromatography-time-of-flight":[2],"mass":[3],"spectrometry":[4],"(GC":[5],"\u00d7":[6,36,84,147,180,233],"GC-TOFMS)":[7],"provides":[8],"a":[9,22,32,143,173,187,190,205,223],"large":[10],"amount":[11],"of":[12,21,51,74,82,128,137,145,194,202,208,230],"molecular":[13],"information":[14],"from":[15,151],"biological":[16],"samples.":[17],"However,":[18],"the":[19,71,91,111,129,133,138,227],"lack":[20],"comprehensive":[23],"compound":[24],"library":[25],"or":[26],"customizable":[27,64],"bioinformatics":[28],"tool":[29],"is":[30,244],"currently":[31],"challenge":[33],"in":[34],"GC":[35,83,146,232],"GC-TOFMS":[37,148,234],"data":[38],"analysis.":[39],"We":[40],"present":[41],"an":[42,104,200],"open-source":[43],"deep":[44,65],"learning":[45],"(DL)":[46],"software":[47],"called":[48],"contour":[49,76,86,96,106,149,241],"regions":[50],"interest":[52],"(ROI)":[53],"identification,":[54],"simulation":[55],"and":[56,80,99,118,132,135,157,166,204,213],"untargeted":[57,235],"metabolomics":[58],"profiler":[59],"(CRISP).":[60],"CRISP":[61,161,218,243],"integrates":[62],"multiple":[63],"neural":[66],"network":[67],"architectures":[68],"for":[69,122,210,226],"assisting":[70],"semi-automated":[72],"identification":[73],"ROIs,":[75],"synthesis,":[77],"resolution":[78],"enhancement":[79],"classification":[81,206],"GC-TOFMS-based":[85],"images.":[87,242],"The":[88,126,176,196],"approach":[89,225],"includes":[90],"novel":[92],"aggregate":[93],"feature":[94],"representative":[95],"(AFRC)":[97],"construction":[98],"stacked":[100],"ROIs.":[101],"This":[102],"generates":[103],"unbiased":[105],"image":[107],"dataset":[108,144],"that":[109],"enhances":[110],"contrasting":[112],"characteristics":[113],"between":[114],"different":[115],"test":[116],"groups":[117],"can":[119],"be":[120],"suitable":[121],"small":[123],"sample":[124],"sizes.":[125],"utility":[127],"generative":[130,182],"models":[131],"accuracy":[134,207],"efficacy":[136],"platform":[139],"were":[140],"demonstrated":[141],"using":[142],"images":[150,165],"patients":[152],"with":[153,189,212],"late-stage":[154],"diabetic":[155],"nephropathy":[156],"healthy":[158],"control":[159],"groups.":[160],"successfully":[162],"constructed":[163],"AFRC":[164],"identified":[167],"over":[168],"five":[169],"ROIs":[170],"to":[171],"create":[172],"deepstacked":[174],"dataset.":[175],"high":[177],"fidelity,":[178],"512":[179],"512-pixels":[181],"model":[183],"was":[184],"trained":[185,197],"as":[186,222],"generator":[188],"Fr\u00e9chet":[191],"inception":[192],"distance":[193],"<47.00.":[195],"classifier":[198],"achieved":[199],"AUROC":[201],">0.96":[203],">95.00%":[209],"datasets":[211],"without":[214],"column":[215],"bleed.":[216],"Overall,":[217],"demonstrates":[219],"good":[220],"potential":[221],"DL-based":[224],"rapid":[228],"analysis":[229],"4-D":[231],"metabolite":[236],"profiles":[237],"by":[238],"directly":[239],"implementing":[240],"available":[245],"at":[246],"https://github.com/vivekmathema/GCxGC-CRISP.":[247]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
