{"id":"https://openalex.org/W4205812412","doi":"https://doi.org/10.1093/bib/bbab548","title":"Comprehensive evaluation of computational methods for predicting cancer driver genes","display_name":"Comprehensive evaluation of computational methods for predicting cancer driver genes","publication_year":2021,"publication_date":"2021-11-30","ids":{"openalex":"https://openalex.org/W4205812412","doi":"https://doi.org/10.1093/bib/bbab548","pmid":"https://pubmed.ncbi.nlm.nih.gov/35037014"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab548","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab548","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbab548/42805687/bbab548.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/23/2/bbab548/42805687/bbab548.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031545203","display_name":"Xiaohui Shi","orcid":"https://orcid.org/0000-0002-4025-1715"},"institutions":[{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaohui Shi","raw_affiliation_strings":["Beijing Institutes of Life Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing 100080, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institutes of Life Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing 100080, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068012395","display_name":"Huajing Teng","orcid":"https://orcid.org/0000-0001-9952-3618"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210093964","display_name":"Peking University Cancer Hospital","ror":"https://ror.org/00nyxxr91","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210093964"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huajing Teng","raw_affiliation_strings":["Department of Radiation Oncology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education) at Peking University Cancer Hospital and Institute, Beijing 100080, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiation Oncology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education) at Peking University Cancer Hospital and Institute, Beijing 100080, China","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210093964"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042185564","display_name":"Leisheng Shi","orcid":"https://orcid.org/0000-0003-3795-3641"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Leisheng Shi","raw_affiliation_strings":["Key Laboratory of Genomic and Precision Medicine, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100080, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Genomic and Precision Medicine, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100080, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061775997","display_name":"Wenjian Bi","orcid":"https://orcid.org/0000-0002-5108-9311"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjian Bi","raw_affiliation_strings":["Department of Medical Genetics, School of Basic Medical Sciences, Peking University, Beijing 100080, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Genetics, School of Basic Medical Sciences, Peking University, Beijing 100080, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084713864","display_name":"Wenqing Wei","orcid":"https://orcid.org/0000-0001-6618-5448"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenqing Wei","raw_affiliation_strings":["Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing 100080, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing 100080, China","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046363705","display_name":"Fengbiao Mao","orcid":"https://orcid.org/0000-0003-0852-4266"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210141942","display_name":"Peking University Third Hospital","ror":"https://ror.org/04wwqze12","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210141942"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fengbiao Mao","raw_affiliation_strings":["Institute of Medical Innovation and Research, Peking University Third Hospital, Beijing 100080, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Innovation and Research, Peking University Third Hospital, Beijing 100080, China","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210141942"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101624947","display_name":"Zhongsheng Sun","orcid":"https://orcid.org/0000-0003-1992-2681"},"institutions":[{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhongsheng Sun","raw_affiliation_strings":["Beijing Institutes of Life Science, Chinese Academy of Sciences, CAS Center for Excellence in Biotic Interactions and State Key Laboratory of Integrated Management of Pest Insects and Rodents, University of Chinese Academy of Sciences, Institute of Genomic Medicine, Wenzhou Medical University, IBMC-BGI Center, the Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), Institute of Basic Medicine and Cancer (IBMC), Chinese Academy of Sciences, Beijing 100080, China"],"raw_orcid":"https://orcid.org/0000-0003-1992-2681","affiliations":[{"raw_affiliation_string":"Beijing Institutes of Life Science, Chinese Academy of Sciences, CAS Center for Excellence in Biotic Interactions and State Key Laboratory of Integrated Management of Pest Insects and Rodents, University of Chinese Academy of Sciences, Institute of Genomic Medicine, Wenzhou Medical University, IBMC-BGI Center, the Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), Institute of Basic Medicine and Cancer (IBMC), Chinese Academy of Sciences, Beijing 100080, China","institution_ids":["https://openalex.org/I4210165038"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5046363705","https://openalex.org/A5101624947"],"corresponding_institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210141942","https://openalex.org/I4210165038"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.359,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.89904021,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"23","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7679622173309326},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7248145341873169},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5658498406410217},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4462943971157074},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4363424479961395},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41658827662467957},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3609544038772583},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11307331919670105},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0835089385509491}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7679622173309326},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7248145341873169},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5658498406410217},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4462943971157074},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4363424479961395},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41658827662467957},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3609544038772583},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11307331919670105},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0835089385509491},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbab548","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab548","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbab548/42805687/bbab548.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35037014","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35037014","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8921613","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8921613","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbab548","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab548","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbab548/42805687/bbab548.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1570643498","display_name":null,"funder_award_id":"32170650","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2082265550","display_name":null,"funder_award_id":"PKU2021LCXQ015","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2382766078","display_name":null,"funder_award_id":"32170656","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G263999189","display_name":null,"funder_award_id":"31911530148","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4586387842","display_name":null,"funder_award_id":"BYSYYZD2021001","funder_id":"https://openalex.org/F4320325739","funder_display_name":"Peking University Third Hospital"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320325739","display_name":"Peking University Third Hospital","ror":"https://ror.org/04wwqze12"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4205812412.pdf","grobid_xml":"https://content.openalex.org/works/W4205812412.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W1571953570","https://openalex.org/W1840508780","https://openalex.org/W1982564236","https://openalex.org/W2006617902","https://openalex.org/W2009720434","https://openalex.org/W2018697469","https://openalex.org/W2028689806","https://openalex.org/W2044433401","https://openalex.org/W2059300459","https://openalex.org/W2088891952","https://openalex.org/W2092123736","https://openalex.org/W2092180333","https://openalex.org/W2096173332","https://openalex.org/W2096460732","https://openalex.org/W2102140136","https://openalex.org/W2104261859","https://openalex.org/W2114031931","https://openalex.org/W2121906867","https://openalex.org/W2122785666","https://openalex.org/W2125118217","https://openalex.org/W2129973040","https://openalex.org/W2141783822","https://openalex.org/W2149082178","https://openalex.org/W2158485828","https://openalex.org/W2159987716","https://openalex.org/W2192915867","https://openalex.org/W2419140434","https://openalex.org/W2442835468","https://openalex.org/W2463663094","https://openalex.org/W2510031061","https://openalex.org/W2519713790","https://openalex.org/W2557187647","https://openalex.org/W2566227895","https://openalex.org/W2610530925","https://openalex.org/W2720897370","https://openalex.org/W2764327284","https://openalex.org/W2767157762","https://openalex.org/W2772435237","https://openalex.org/W2789627388","https://openalex.org/W2789924919","https://openalex.org/W2796408191","https://openalex.org/W2883631445","https://openalex.org/W2884736612","https://openalex.org/W2910305771","https://openalex.org/W2915168078","https://openalex.org/W2946173685","https://openalex.org/W2949492942","https://openalex.org/W2958066336","https://openalex.org/W2966169904","https://openalex.org/W2989922709","https://openalex.org/W2998647770","https://openalex.org/W3004392981","https://openalex.org/W3095895133","https://openalex.org/W3098804002","https://openalex.org/W4302555030","https://openalex.org/W6634934950","https://openalex.org/W6655333022","https://openalex.org/W6736619654","https://openalex.org/W6749511434","https://openalex.org/W6770519734","https://openalex.org/W6785122925"],"related_works":["https://openalex.org/W1485630101","https://openalex.org/W2498017833","https://openalex.org/W112744582","https://openalex.org/W3033750096","https://openalex.org/W2081245617","https://openalex.org/W4289828962","https://openalex.org/W1537221325","https://openalex.org/W2164513229","https://openalex.org/W2805452530","https://openalex.org/W2593649365"],"abstract_inverted_index":{"Optimal":[0],"methods":[1,16,49,98],"could":[2],"effectively":[3],"improve":[4],"the":[5,41,53,79,100,111,114,156,161],"accuracy":[6],"of":[7,40,44,81,86,131],"predicting":[8],"and":[9,22,47,58,68,89,95,113,120,141,173],"identifying":[10],"candidate":[11],"driver":[12,31,140,178],"genes.":[13,143],"Various":[14],"computational":[15],"based":[17],"on":[18],"mutational":[19],"frequency,":[20],"network":[21],"function":[23],"approaches":[24,82],"have":[25],"been":[26],"developed":[27],"to":[28,137],"identify":[29],"mutation":[30],"genes":[32],"in":[33,84],"cancer":[34,171,177],"genomes.":[35],"However,":[36],"a":[37,146],"comprehensive":[38],"evaluation":[39],"performance":[42,61,80],"levels":[43],"network-,":[45],"function-":[46,112],"frequency-based":[48,70,93,115],"is":[50],"lacking.":[51],"In":[52],"present":[54],"study,":[55],"we":[56,154],"assessed":[57],"compared":[59],"eight":[60,64,73],"criteria":[62],"for":[63,126,170],"network-based,":[65],"one":[66],"function-based":[67],"three":[69],"algorithms":[71,105,133],"using":[72,106,182],"benchmark":[74],"datasets.":[75],"Under":[76],"different":[77],"conditions,":[78],"varied":[83],"terms":[85],"network,":[87],"measurement":[88],"sample":[90],"size.":[91],"The":[92],"driverMAPS":[94],"network-based":[96],"HotNet2":[97],"showed":[99],"best":[101],"overall":[102],"performance.":[103],"Network-based":[104],"protein-protein":[107],"interaction":[108],"networks":[109],"outperformed":[110],"approaches.":[116,128],"Precision,":[117],"F1":[118],"score":[119],"Matthews":[121],"correlation":[122],"coefficient":[123],"were":[124],"low":[125],"most":[127,130],"Thus,":[129],"these":[132],"require":[134],"stringent":[135],"cutoffs":[136],"correctly":[138],"distinguish":[139],"non-driver":[142],"We":[144],"constructed":[145],"website":[147],"named":[148],"Cancer":[149],"Driver":[150],"Catalog":[151],"(http://159.226.67.237/sun/cancer_driver/),":[152],"wherein":[153],"integrated":[155],"gene":[157,179],"scores":[158],"predicted":[159],"by":[160,181],"foregoing":[162],"software":[163],"programs.":[164],"This":[165],"resource":[166],"provides":[167],"valuable":[168],"guidance":[169],"researchers":[172],"clinical":[174],"oncologists":[175],"prioritizing":[176],"candidates":[180],"an":[183],"optimal":[184],"tool.":[185]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":7}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
