{"id":"https://openalex.org/W4200241873","doi":"https://doi.org/10.1093/bib/bbab542","title":"TMNP: a transcriptome-based multi-scale network pharmacology platform for herbal medicine","display_name":"TMNP: a transcriptome-based multi-scale network pharmacology platform for herbal medicine","publication_year":2021,"publication_date":"2021-11-25","ids":{"openalex":"https://openalex.org/W4200241873","doi":"https://doi.org/10.1093/bib/bbab542","pmid":"https://pubmed.ncbi.nlm.nih.gov/34933331"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab542","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab542","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100432746","display_name":"Peng Li","orcid":"https://orcid.org/0000-0002-8858-8106"},"institutions":[{"id":"https://openalex.org/I119868032","display_name":"Shanxi Agricultural University","ror":"https://ror.org/05e9f5362","country_code":"CN","type":"education","lineage":["https://openalex.org/I119868032"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Peng Li","raw_affiliation_strings":["College of Basic Sciences, Shanxi Agricultural University, Taigu 030801, China"],"raw_orcid":"https://orcid.org/0000-0002-8858-8106","affiliations":[{"raw_affiliation_string":"College of Basic Sciences, Shanxi Agricultural University, Taigu 030801, China","institution_ids":["https://openalex.org/I119868032"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100340487","display_name":"Haoran Zhang","orcid":"https://orcid.org/0000-0002-4641-0641"},"institutions":[{"id":"https://openalex.org/I119868032","display_name":"Shanxi Agricultural University","ror":"https://ror.org/05e9f5362","country_code":"CN","type":"education","lineage":["https://openalex.org/I119868032"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoran Zhang","raw_affiliation_strings":["College of Basic Sciences, Shanxi Agricultural University, Taigu 030801, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Basic Sciences, Shanxi Agricultural University, Taigu 030801, China","institution_ids":["https://openalex.org/I119868032"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035190973","display_name":"Wuxia Zhang","orcid":"https://orcid.org/0000-0002-0759-2489"},"institutions":[{"id":"https://openalex.org/I119868032","display_name":"Shanxi Agricultural University","ror":"https://ror.org/05e9f5362","country_code":"CN","type":"education","lineage":["https://openalex.org/I119868032"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wuxia Zhang","raw_affiliation_strings":["College of Basic Sciences, Shanxi Agricultural University, Taigu 030801, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Basic Sciences, Shanxi Agricultural University, Taigu 030801, China","institution_ids":["https://openalex.org/I119868032"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100320651","display_name":"Yuanyuan Zhang","orcid":"https://orcid.org/0000-0002-3765-7298"},"institutions":[{"id":"https://openalex.org/I119868032","display_name":"Shanxi Agricultural University","ror":"https://ror.org/05e9f5362","country_code":"CN","type":"education","lineage":["https://openalex.org/I119868032"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanyuan Zhang","raw_affiliation_strings":["College of Basic Sciences, Shanxi Agricultural University, Taigu 030801, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Basic Sciences, Shanxi Agricultural University, Taigu 030801, China","institution_ids":["https://openalex.org/I119868032"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031818710","display_name":"Lingmin Zhan","orcid":null},"institutions":[{"id":"https://openalex.org/I119868032","display_name":"Shanxi Agricultural University","ror":"https://ror.org/05e9f5362","country_code":"CN","type":"education","lineage":["https://openalex.org/I119868032"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lingmin Zhan","raw_affiliation_strings":["College of Basic Sciences, Shanxi Agricultural University, Taigu 030801, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Basic Sciences, Shanxi Agricultural University, Taigu 030801, China","institution_ids":["https://openalex.org/I119868032"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100387207","display_name":"Ning Wang","orcid":"https://orcid.org/0000-0003-1410-329X"},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ning Wang","raw_affiliation_strings":["School of Computer and Information Technology and Beijing Key Lab of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing 100044, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Information Technology and Beijing Key Lab of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing 100044, China","institution_ids":["https://openalex.org/I21193070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103069871","display_name":"Caiping Chen","orcid":"https://orcid.org/0009-0003-2355-8568"},"institutions":[{"id":"https://openalex.org/I119868032","display_name":"Shanxi Agricultural University","ror":"https://ror.org/05e9f5362","country_code":"CN","type":"education","lineage":["https://openalex.org/I119868032"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Caiping Chen","raw_affiliation_strings":["College of Basic Sciences, Shanxi Agricultural University, Taigu 030801, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Basic Sciences, Shanxi Agricultural University, Taigu 030801, China","institution_ids":["https://openalex.org/I119868032"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004824811","display_name":"Bangze Fu","orcid":"https://orcid.org/0000-0003-0764-0951"},"institutions":[{"id":"https://openalex.org/I49496784","display_name":"Beijing City University","ror":"https://ror.org/01jfjwr55","country_code":"CN","type":"education","lineage":["https://openalex.org/I49496784"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bangze Fu","raw_affiliation_strings":["School of Biomedicine, Beijing City University, Beijing 100094, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedicine, Beijing City University, Beijing 100094, China","institution_ids":["https://openalex.org/I49496784"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101985489","display_name":"Jinzhong Zhao","orcid":"https://orcid.org/0000-0003-0823-324X"},"institutions":[{"id":"https://openalex.org/I119868032","display_name":"Shanxi Agricultural University","ror":"https://ror.org/05e9f5362","country_code":"CN","type":"education","lineage":["https://openalex.org/I119868032"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinzhong Zhao","raw_affiliation_strings":["College of Basic Sciences, Shanxi Agricultural University, Taigu 030801, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Basic Sciences, Shanxi Agricultural University, Taigu 030801, China","institution_ids":["https://openalex.org/I119868032"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052838340","display_name":"Xuezhong Zhou","orcid":"https://orcid.org/0000-0002-4713-3594"},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuezhong Zhou","raw_affiliation_strings":["School of Computer and Information Technology and Beijing Key Lab of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing 100044, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Information Technology and Beijing Key Lab of Traffic Data Analysis and Mining, Beijing Jiaotong University, Beijing 100044, China","institution_ids":["https://openalex.org/I21193070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079280300","display_name":"Shuzhen Guo","orcid":"https://orcid.org/0000-0002-8980-9812"},"institutions":[{"id":"https://openalex.org/I17747738","display_name":"Beijing University of Chinese Medicine","ror":"https://ror.org/05damtm70","country_code":"CN","type":"education","lineage":["https://openalex.org/I17747738"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuzhen Guo","raw_affiliation_strings":["School of Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China","institution_ids":["https://openalex.org/I17747738"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100379152","display_name":"Jianxin Chen","orcid":"https://orcid.org/0000-0003-4067-5638"},"institutions":[{"id":"https://openalex.org/I17747738","display_name":"Beijing University of Chinese Medicine","ror":"https://ror.org/05damtm70","country_code":"CN","type":"education","lineage":["https://openalex.org/I17747738"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianxin Chen","raw_affiliation_strings":["School of Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China","institution_ids":["https://openalex.org/I17747738"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5100379152","https://openalex.org/A5100432746"],"corresponding_institution_ids":["https://openalex.org/I119868032","https://openalex.org/I17747738"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.3636,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.92058927,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12817","display_name":"Pharmacological Effects of Natural Compounds","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12817","display_name":"Pharmacological Effects of Natural Compounds","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11709","display_name":"Traditional Chinese Medicine Analysis","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/herb","display_name":"Herb","score":0.6306924819946289},{"id":"https://openalex.org/keywords/systems-pharmacology","display_name":"Systems pharmacology","score":0.5376070737838745},{"id":"https://openalex.org/keywords/traditional-medicine","display_name":"Traditional medicine","score":0.5213114619255066},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5198241472244263},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5113070011138916},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.49940013885498047},{"id":"https://openalex.org/keywords/medicinal-herbs","display_name":"Medicinal herbs","score":0.4989926815032959},{"id":"https://openalex.org/keywords/traditional-chinese-medicine","display_name":"Traditional Chinese medicine","score":0.4874480068683624},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4548013210296631},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.43151378631591797},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.32247161865234375},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.2885751724243164},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.260568231344223},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25479602813720703},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21101373434066772},{"id":"https://openalex.org/keywords/alternative-medicine","display_name":"Alternative medicine","score":0.1764877438545227},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.12751677632331848}],"concepts":[{"id":"https://openalex.org/C2779824472","wikidata":"https://www.wikidata.org/wiki/Q207123","display_name":"Herb","level":3,"score":0.6306924819946289},{"id":"https://openalex.org/C2779446555","wikidata":"https://www.wikidata.org/wiki/Q7663877","display_name":"Systems pharmacology","level":3,"score":0.5376070737838745},{"id":"https://openalex.org/C556039675","wikidata":"https://www.wikidata.org/wiki/Q771035","display_name":"Traditional medicine","level":1,"score":0.5213114619255066},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5198241472244263},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5113070011138916},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.49940013885498047},{"id":"https://openalex.org/C2991655182","wikidata":"https://www.wikidata.org/wiki/Q188840","display_name":"Medicinal herbs","level":2,"score":0.4989926815032959},{"id":"https://openalex.org/C188947578","wikidata":"https://www.wikidata.org/wiki/Q200253","display_name":"Traditional Chinese medicine","level":3,"score":0.4874480068683624},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4548013210296631},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.43151378631591797},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.32247161865234375},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.2885751724243164},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.260568231344223},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25479602813720703},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21101373434066772},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.1764877438545227},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.12751677632331848},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000091484","descriptor_name":"Network Pharmacology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000091484","descriptor_name":"Network Pharmacology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000091484","descriptor_name":"Network Pharmacology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008516","descriptor_name":"Medicine, Chinese Traditional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008516","descriptor_name":"Medicine, Chinese Traditional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008516","descriptor_name":"Medicine, Chinese Traditional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010946","descriptor_name":"Plants, Medicinal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010946","descriptor_name":"Plants, Medicinal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010946","descriptor_name":"Plants, Medicinal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012503","descriptor_name":"Saponins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012503","descriptor_name":"Saponins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012503","descriptor_name":"Saponins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D027885","descriptor_name":"Astragalus propinquus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D027885","descriptor_name":"Astragalus propinquus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D027885","descriptor_name":"Astragalus propinquus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029001","descriptor_name":"Herbal Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D029001","descriptor_name":"Herbal Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D029001","descriptor_name":"Herbal Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab542","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab542","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34933331","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34933331","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5535890472","display_name":null,"funder_award_id":"81703945","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7885430493","display_name":null,"funder_award_id":"31800678","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1509405108","https://openalex.org/W1824377721","https://openalex.org/W1975153455","https://openalex.org/W1980928891","https://openalex.org/W1993352447","https://openalex.org/W1999400923","https://openalex.org/W2017810519","https://openalex.org/W2031025093","https://openalex.org/W2042952308","https://openalex.org/W2050113624","https://openalex.org/W2050599772","https://openalex.org/W2094313031","https://openalex.org/W2124679671","https://openalex.org/W2124757426","https://openalex.org/W2126354256","https://openalex.org/W2130303892","https://openalex.org/W2130410032","https://openalex.org/W2131219767","https://openalex.org/W2149648788","https://openalex.org/W2149711855","https://openalex.org/W2162011385","https://openalex.org/W2166003431","https://openalex.org/W2279201083","https://openalex.org/W2547898348","https://openalex.org/W2595454228","https://openalex.org/W2612467560","https://openalex.org/W2899291554","https://openalex.org/W3014234415","https://openalex.org/W3108860514","https://openalex.org/W3133590568","https://openalex.org/W3134548309","https://openalex.org/W3159398104","https://openalex.org/W6661352527","https://openalex.org/W6678967187"],"related_works":["https://openalex.org/W2393979392","https://openalex.org/W2385590096","https://openalex.org/W4322504657","https://openalex.org/W2158714033","https://openalex.org/W2357369346","https://openalex.org/W3129407679","https://openalex.org/W2352544315","https://openalex.org/W2418728716","https://openalex.org/W1963702345","https://openalex.org/W2127864418"],"abstract_inverted_index":{"One":[0],"of":[1,12,22,39,56,68,84,94,113,142,147,154,173,197],"the":[2,8,19,25,29,44,53,66,69,80,91,110,140,170,190,194,209,215,222,232,239],"most":[3],"difficult":[4],"problems":[5],"that":[6],"hinder":[7],"development":[9],"and":[10,42,86,145,159,164,185,204,225,238],"application":[11],"herbal":[13,57,70,77,95,114,155,198,202,236],"medicine":[14,156,203,237],"is":[15,62,243],"how":[16],"to":[17,51,129,138,168,179,188,192],"illuminate":[18],"global":[20,92,111],"effects":[21,55,83,93,112,172,196],"herbs":[23,35,85,163],"on":[24,48,221],"human":[26,240],"body.":[27,241],"Currently,":[28],"chemo-centric":[30],"network":[31,104,217],"pharmacology":[32,105,218],"methodology":[33],"regards":[34],"as":[36,157],"a":[37,180,227],"mixture":[38],"chemical":[40,223],"ingredients":[41],"constructs":[43],"'herb-compound-target-disease'":[45],"connections":[46],"based":[47],"bioinformatics":[49],"methods,":[50],"explore":[52,169],"pharmacological":[54],"medicine.":[58,96,115,175,199],"However,":[59],"this":[60],"approach":[61],"severely":[63],"affected":[64],"by":[65,76],"complexity":[67],"composition.":[71],"Alternatively,":[72],"gene-expression":[73],"profiles":[74,144],"induced":[75],"treatment":[78],"reflect":[79],"overall":[81],"biological":[82,125,166,206],"are":[87,136],"suitable":[88],"for":[89,108,123,229],"studying":[90],"Here,":[97],"we":[98,117],"develop":[99],"an":[100],"online":[101],"transcriptome-based":[102],"multi-scale":[103,171,195],"platform":[106],"(TMNP)":[107],"exploring":[109],"Firstly,":[116],"build":[118],"specific":[119,134],"functional":[120],"gene":[121,148],"signatures":[122],"different":[124,165],"scales":[126,167,207],"from":[127],"molecular":[128],"higher":[130],"tissue":[131],"levels.":[132],"Then,":[133],"algorithms":[135],"designed":[137],"measure":[139],"correlations":[141],"transcriptional":[143],"types":[146],"signatures.":[149],"Finally,":[150],"TMNP":[151,178,200,242],"uses":[152],"pharmacotranscriptomics":[153],"input":[158],"builds":[160],"associations":[161],"between":[162,235],"herb":[174,182],"We":[176],"applied":[177],"single":[181],"Astragalus":[183],"membranaceus":[184],"Xuesaitong":[186],"injection":[187],"demonstrate":[189],"power":[191],"reveal":[193],"integrating":[201],"multiple":[205],"into":[208],"same":[210],"framework,":[211],"will":[212],"greatly":[213],"extend":[214],"conventional":[216],"model":[219],"centering":[220],"components,":[224],"provide":[226],"window":[228],"systematically":[230],"observing":[231],"complex":[233],"interactions":[234],"available":[244],"at":[245],"http://www.bcxnfz.top/TMNP.":[246]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
