{"id":"https://openalex.org/W4200351086","doi":"https://doi.org/10.1093/bib/bbab514","title":"META-DDIE: predicting drug\u2013drug interaction events with few-shot learning","display_name":"META-DDIE: predicting drug\u2013drug interaction events with few-shot learning","publication_year":2021,"publication_date":"2021-11-10","ids":{"openalex":"https://openalex.org/W4200351086","doi":"https://doi.org/10.1093/bib/bbab514","pmid":"https://pubmed.ncbi.nlm.nih.gov/34893793"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab514","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab514","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101936817","display_name":"Yifan Deng","orcid":"https://orcid.org/0000-0002-0077-9718"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yifan Deng","raw_affiliation_strings":["School of Computer Science, Fudan University, Wuhan, Hubei 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Fudan University, Wuhan, Hubei 430070, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100379370","display_name":"Yang Qiu","orcid":"https://orcid.org/0000-0001-8022-0465"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Qiu","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University, Wuhan, Hubei 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, Hubei 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100327021","display_name":"Xinran Xu","orcid":"https://orcid.org/0000-0001-8273-5331"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinran Xu","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University, Wuhan, Hubei 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, Hubei 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100682513","display_name":"Shichao Liu","orcid":"https://orcid.org/0000-0001-7217-4462"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shichao Liu","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University, Wuhan, Hubei 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, Hubei 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036747535","display_name":"Zhongfei Zhang","orcid":"https://orcid.org/0000-0001-5098-2506"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhongfei Zhang","raw_affiliation_strings":["Computer Science Department, Binghamton University, Wuhan, Hubei 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Binghamton University, Wuhan, Hubei 430070, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045866167","display_name":"Shanfeng Zhu","orcid":"https://orcid.org/0000-0002-6067-5312"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shanfeng Zhu","raw_affiliation_strings":["Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Wuhan, Hubei 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Wuhan, Hubei 430070, China","institution_ids":["https://openalex.org/I4210164150","https://openalex.org/I24943067"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100448121","display_name":"Wen Zhang","orcid":"https://orcid.org/0000-0001-5221-2628"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wen Zhang","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University, Wuhan, Hubei 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, Hubei 430070, China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100448121"],"corresponding_institution_ids":["https://openalex.org/I204823248"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":6.6591,"has_fulltext":false,"cited_by_count":65,"citation_normalized_percentile":{"value":0.9729349,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9463000297546387,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9200999736785889,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drugbank","display_name":"DrugBank","score":0.8858675360679626},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7816112041473389},{"id":"https://openalex.org/keywords/drug-drug-interaction","display_name":"Drug-drug interaction","score":0.7139793634414673},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.6119408011436462},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6077784299850464},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5866662263870239},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5566079020500183},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5413979291915894},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5241720676422119},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.4212223291397095},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.13841107487678528},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.11861181259155273}],"concepts":[{"id":"https://openalex.org/C155261790","wikidata":"https://www.wikidata.org/wiki/Q1122544","display_name":"DrugBank","level":3,"score":0.8858675360679626},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7816112041473389},{"id":"https://openalex.org/C2910466267","wikidata":"https://www.wikidata.org/wiki/Q718753","display_name":"Drug-drug interaction","level":3,"score":0.7139793634414673},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.6119408011436462},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6077784299850464},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5866662263870239},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5566079020500183},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5413979291915894},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5241720676422119},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.4212223291397095},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13841107487678528},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.11861181259155273},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab514","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab514","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34893793","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34893793","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6200000047683716}],"awards":[{"id":"https://openalex.org/G1311322377","display_name":"\u77e5\u8bc6\u56fe\u8c31\u9a71\u52a8\u7684\u836f\u7269-\u75be\u75c5\u5173\u8054\u9884\u6d4b\u65b9\u6cd5\u7814\u7a76","funder_award_id":"62072206","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5693357935","display_name":"\u57fa\u4e8e\u836f\u7269\u5927\u6570\u636e\u7684\u6f5c\u5728\u4e0d\u826f\u836f\u7269\u53cd\u5e94\u6316\u6398\u7814\u7a76","funder_award_id":"61772381","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6023783866","display_name":null,"funder_award_id":"2662021JC008","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1018047830","https://openalex.org/W1509765910","https://openalex.org/W1988037271","https://openalex.org/W2004431923","https://openalex.org/W2018518196","https://openalex.org/W2091439417","https://openalex.org/W2170189740","https://openalex.org/W2200548835","https://openalex.org/W2310115806","https://openalex.org/W2570516417","https://openalex.org/W2604763608","https://openalex.org/W2606780347","https://openalex.org/W2612690371","https://openalex.org/W2777416523","https://openalex.org/W2802200505","https://openalex.org/W2900758217","https://openalex.org/W2946438679","https://openalex.org/W2965993245","https://openalex.org/W2997021962","https://openalex.org/W3005363097","https://openalex.org/W3024894285","https://openalex.org/W3034516664","https://openalex.org/W3160363665","https://openalex.org/W3198974858","https://openalex.org/W4236965008","https://openalex.org/W4294170691","https://openalex.org/W6682691769","https://openalex.org/W6735236233","https://openalex.org/W6736057607","https://openalex.org/W6736685754","https://openalex.org/W6745625233","https://openalex.org/W6783596713"],"related_works":["https://openalex.org/W2013181441","https://openalex.org/W4205564556","https://openalex.org/W2292935574","https://openalex.org/W2887372993","https://openalex.org/W2135037015","https://openalex.org/W2251104810","https://openalex.org/W4200351086","https://openalex.org/W2782660323","https://openalex.org/W4291302307","https://openalex.org/W3082115611"],"abstract_inverted_index":{"Drug-drug":[0],"interactions":[1],"(DDIs)":[2],"are":[3,152],"one":[4],"of":[5,15,88,115,125,134],"the":[6,39,47,51,75,123,131,137,141,144,164,175,186,196],"major":[7],"concerns":[8],"in":[9],"pharmaceutical":[10],"research,":[11],"and":[12,92,105,109,129,154,172,194],"a":[13,80,89,93,118],"number":[14],"computational":[16,82,165],"methods":[17,171],"have":[18,64],"been":[19,33],"developed":[20],"to":[21,35,96,147,184],"predict":[22,97,148],"whether":[23,149],"two":[24,150],"drugs":[25,126],"interact":[26],"or":[27,55],"not.":[28],"Recently,":[29],"more":[30,43],"attention":[31],"has":[32],"paid":[34],"events":[36,61,112,158,193],"caused":[37],"by":[38],"DDIs,":[40],"which":[41,86],"is":[42],"useful":[44],"for":[45,178],"investigating":[46],"mechanism":[48],"hidden":[49],"behind":[50],"combined":[52],"drug":[53,102],"usage":[54],"adverse":[56],"reactions.":[57],"However,":[58],"some":[59],"rare":[60,179],"may":[62,190],"only":[63],"few":[65,160],"examples,":[66],"hindering":[67],"them":[68],"from":[69,107],"being":[70],"precisely":[71],"predicted.":[72],"To":[73],"address":[74],"above":[76],"issues,":[77],"we":[78],"present":[79],"few-shot":[81],"method":[83],"named":[84],"META-DDIE,":[85],"consists":[87],"representation":[90,138],"module":[91,146],"comparing":[94,145],"module,":[95],"DDI":[98,111,157,192],"events.":[99,180,200],"We":[100],"collect":[101],"chemical":[103],"structures":[104,124],"DDIs":[106,135],"DrugBank,":[108],"categorize":[110],"into":[113],"hundreds":[114],"types":[116],"using":[117],"standard":[119],"pipeline.":[120],"META-DDIE":[121,167,182],"uses":[122,143],"as":[127],"input":[128],"learns":[130],"interpretable":[132],"representations":[133,151],"through":[136],"module.":[139],"Then,":[140],"model":[142],"similar,":[153],"finally":[155],"predicts":[156],"with":[159],"labeled":[161],"examples.":[162],"In":[163],"experiments,":[166],"outperforms":[168],"several":[169],"baseline":[170],"especially":[173],"enhances":[174],"predictive":[176],"capability":[177],"Moreover,":[181],"helps":[183],"identify":[185],"key":[187],"factors":[188],"that":[189],"cause":[191],"reveal":[195],"relationship":[197],"among":[198],"different":[199]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":20},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":9}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
