{"id":"https://openalex.org/W4200227922","doi":"https://doi.org/10.1093/bib/bbab511","title":"Predicting drug\u2013drug interactions by graph convolutional network with multi-kernel","display_name":"Predicting drug\u2013drug interactions by graph convolutional network with multi-kernel","publication_year":2021,"publication_date":"2021-11-08","ids":{"openalex":"https://openalex.org/W4200227922","doi":"https://doi.org/10.1093/bib/bbab511","pmid":"https://pubmed.ncbi.nlm.nih.gov/34864856"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab511","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab511","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023697352","display_name":"Fei Wang","orcid":"https://orcid.org/0000-0003-2157-9931"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fei Wang","raw_affiliation_strings":["Division of Biomedical Engineering, University of Saskatchewan, 57 Campus Drive, S7N 5A9, Saskatchewan, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering, University of Saskatchewan, 57 Campus Drive, S7N 5A9, Saskatchewan, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058768577","display_name":"Xiujuan Lei","orcid":"https://orcid.org/0000-0002-9901-1732"},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiujuan Lei","raw_affiliation_strings":["School of Computer Science, Shaanxi Normal University, 620 West Chang\u2019an Avenue, 710119, Shaanxi, China","School of Computer Science, Shaanxi Normal University, 620 West Chang'an Avenue, 710119, Shaanxi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Shaanxi Normal University, 620 West Chang\u2019an Avenue, 710119, Shaanxi, China","institution_ids":["https://openalex.org/I88830068"]},{"raw_affiliation_string":"School of Computer Science, Shaanxi Normal University, 620 West Chang'an Avenue, 710119, Shaanxi, China","institution_ids":["https://openalex.org/I88830068"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031510017","display_name":"Bo Liao","orcid":"https://orcid.org/0000-0002-3383-5691"},"institutions":[{"id":"https://openalex.org/I152033890","display_name":"Hainan Normal University","ror":"https://ror.org/031dhcv14","country_code":"CN","type":"education","lineage":["https://openalex.org/I152033890"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Liao","raw_affiliation_strings":["School of Mathematics and Statistics, Hainan Normal University, 99 Longkun South Road, 571158, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, Hainan Normal University, 99 Longkun South Road, 571158, Hainan, China","institution_ids":["https://openalex.org/I152033890"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["Department of Mechanical Engineering and Department of Computer Science, University of Saskatchewan, 57 Campus Drive, S7N 5A9, Saskatchewan, Canada","Division of Biomedical Engineering, University of Saskatchewan, 57 Campus Drive, S7N 5A9, Saskatchewan, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering and Department of Computer Science, University of Saskatchewan, 57 Campus Drive, S7N 5A9, Saskatchewan, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"Division of Biomedical Engineering, University of Saskatchewan, 57 Campus Drive, S7N 5A9, Saskatchewan, Canada","institution_ids":["https://openalex.org/I32625721"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5091157395"],"corresponding_institution_ids":["https://openalex.org/I32625721"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":8.541,"has_fulltext":false,"cited_by_count":82,"citation_normalized_percentile":{"value":0.98098028,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9779000282287598,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.70125412940979},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6762911677360535},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5840513110160828},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.5124762654304504},{"id":"https://openalex.org/keywords/drug-drug-interaction","display_name":"Drug-drug interaction","score":0.4327154755592346},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2653454542160034},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.15504798293113708},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13053977489471436},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.12998229265213013}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.70125412940979},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6762911677360535},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5840513110160828},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.5124762654304504},{"id":"https://openalex.org/C2910466267","wikidata":"https://www.wikidata.org/wiki/Q718753","display_name":"Drug-drug interaction","level":3,"score":0.4327154755592346},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2653454542160034},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.15504798293113708},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13053977489471436},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.12998229265213013},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab511","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab511","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34864856","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34864856","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8100000023841858}],"awards":[{"id":"https://openalex.org/G6948385958","display_name":null,"funder_award_id":"61428209","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8374596419","display_name":null,"funder_award_id":"2020YFB2104400","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1980001478","https://openalex.org/W2094791588","https://openalex.org/W2119002393","https://openalex.org/W2145578524","https://openalex.org/W2187089797","https://openalex.org/W2346950316","https://openalex.org/W2570516417","https://openalex.org/W2592742128","https://openalex.org/W2608081584","https://openalex.org/W2612467560","https://openalex.org/W2753953057","https://openalex.org/W2767891136","https://openalex.org/W2799845593","https://openalex.org/W2896002881","https://openalex.org/W2962756421","https://openalex.org/W2964015378","https://openalex.org/W2970428221","https://openalex.org/W2997159096","https://openalex.org/W2997235817","https://openalex.org/W2997277473","https://openalex.org/W3000600836","https://openalex.org/W3004273418","https://openalex.org/W3006737593","https://openalex.org/W3032123378","https://openalex.org/W3032897120","https://openalex.org/W3080946997","https://openalex.org/W3088680691","https://openalex.org/W3093030756","https://openalex.org/W3093194543","https://openalex.org/W3096828292","https://openalex.org/W3108458441","https://openalex.org/W6726873649","https://openalex.org/W6767515201","https://openalex.org/W6771899522","https://openalex.org/W6772404680","https://openalex.org/W6772587892"],"related_works":["https://openalex.org/W2395332729","https://openalex.org/W3082755771","https://openalex.org/W2407625558","https://openalex.org/W4230772827","https://openalex.org/W2485789143","https://openalex.org/W4250047567","https://openalex.org/W2040338448","https://openalex.org/W2415873281","https://openalex.org/W2051277525","https://openalex.org/W2463344692"],"abstract_inverted_index":{"Drug":[0],"repositioning":[1,16],"is":[2,50,56],"proposed":[3,177],"to":[4,43,96,233],"find":[5],"novel":[6,34],"usages":[7],"for":[8,33,106,141],"existing":[9,64],"drugs.":[10,227],"Among":[11],"many":[12,61],"types":[13,148,161],"of":[14,27,38,62,69,116,124,149,156,162,185,229,237],"drug":[15,129,150],"approaches,":[17],"predicting":[18],"drug-drug":[19],"interactions":[20],"(DDIs)":[21],"helps":[22],"explore":[23],"the":[24,53,63,67,107,142,153,180,202,212,218,235],"pharmacological":[25],"functions":[26,68],"drugs":[28,32,157],"and":[29,73,119,164,192,211,224],"achieves":[30,179],"potential":[31,98,205,215],"treatments.":[35],"A":[36],"number":[37],"models":[39],"have":[40,231],"been":[41],"applied":[42],"predict":[44,97],"DDIs.":[45,99,126],"The":[46,127],"DDI":[47,80,103,113,121,143,173],"network,":[48],"which":[49],"constructed":[51],"from":[52,207,217],"known":[54],"DDIs,":[55,210],"a":[57,78,89,134],"common":[58],"part":[59],"in":[60,77,183],"methods.":[65],"However,":[66],"DDIs":[70,118,206,216,220],"are":[71,131],"different,":[72],"thus":[74],"integrating":[75],"them":[76,230],"single":[79],"graph":[81,90,104,108,114,122],"may":[82],"overlook":[83],"some":[84],"useful":[85],"information.":[86],"We":[87,145],"propose":[88],"convolutional":[91,109],"network":[92],"with":[93,136,170],"multi-kernel":[94],"(GCNMK)":[95],"GCNMK":[100,178],"adopts":[101],"two":[102],"kernels":[105],"layers,":[110],"namely,":[111],"increased":[112],"consisting":[115,123],"'increase'-related":[117],"decreased":[120],"'decrease'-related":[125],"learned":[128],"features":[130,163],"fed":[132],"into":[133],"block":[135],"three":[137,171],"fully":[138],"connected":[139],"layers":[140],"prediction.":[144],"compare":[146],"various":[147],"features,":[151],"whereas":[152],"target":[154],"feature":[155],"outperforms":[158],"all":[159,208],"other":[160],"their":[165,238],"concatenated":[166],"features.":[167],"In":[168,197],"comparison":[169],"different":[172],"prediction":[174],"methods,":[175],"our":[176],"best":[181],"performance":[182],"terms":[184],"area":[186,193],"under":[187,194],"receiver":[188],"operating":[189],"characteristic":[190],"curve":[191],"precision-recall":[195],"curve.":[196],"case":[198],"studies,":[199],"we":[200],"identify":[201],"top":[203,213],"20":[204],"unknown":[209,219],"10":[214],"among":[221],"breast,":[222],"colorectal":[223],"lung":[225],"neoplasms-related":[226],"Most":[228],"evidence":[232],"support":[234],"existence":[236],"interactions.":[239],"fangxiang.wu@usask.ca.":[240]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":27},{"year":2023,"cited_by_count":23},{"year":2022,"cited_by_count":9}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
