{"id":"https://openalex.org/W4200292276","doi":"https://doi.org/10.1093/bib/bbab505","title":"iCRISEE: an integrative analysis of CRISPR screen by reducing false positive hits","display_name":"iCRISEE: an integrative analysis of CRISPR screen by reducing false positive hits","publication_year":2021,"publication_date":"2021-11-05","ids":{"openalex":"https://openalex.org/W4200292276","doi":"https://doi.org/10.1093/bib/bbab505","pmid":"https://pubmed.ncbi.nlm.nih.gov/34905767"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab505","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab505","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053508234","display_name":"Tengbo Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I4210132741","display_name":"Shanghai Tenth People's Hospital","ror":"https://ror.org/03vjkf643","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210132741"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tengbo Zhang","raw_affiliation_strings":["Tongji University Cancer Center, Shanghai Tenth People's Hospital, School of Medicine, School of Life Sciences and Technology, Tongji University, Shanghai 200092, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tongji University Cancer Center, Shanghai Tenth People's Hospital, School of Medicine, School of Life Sciences and Technology, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I4210132741","https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009914576","display_name":"Yaxu Li","orcid":null},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaxu Li","raw_affiliation_strings":["School of Medicine, Tongji University, Shanghai 200092, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044370467","display_name":"Yanrong Yang","orcid":"https://orcid.org/0000-0002-2642-2207"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanrong Yang","raw_affiliation_strings":["School of Medicine, Tongji University, Shanghai 200092, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078296890","display_name":"Linjun Weng","orcid":"https://orcid.org/0000-0003-4748-7250"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I4210132741","display_name":"Shanghai Tenth People's Hospital","ror":"https://ror.org/03vjkf643","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210132741"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Linjun Weng","raw_affiliation_strings":["Tongji University Cancer Center, Shanghai Tenth People's Hospital, School of Medicine, Tongji University, Shanghai 200092, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tongji University Cancer Center, Shanghai Tenth People's Hospital, School of Medicine, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I4210132741","https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046893121","display_name":"Zhiqiang Wu","orcid":"https://orcid.org/0000-0002-1800-9527"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I4210132741","display_name":"Shanghai Tenth People's Hospital","ror":"https://ror.org/03vjkf643","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210132741"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiqiang Wu","raw_affiliation_strings":["Tongji University Cancer Center, Shanghai Tenth People's Hospital, School of Medicine, School of Life Sciences and Technology, Tongji University, Shanghai 200092, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tongji University Cancer Center, Shanghai Tenth People's Hospital, School of Medicine, School of Life Sciences and Technology, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I4210132741","https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101878654","display_name":"Jiali Zhu","orcid":"https://orcid.org/0000-0003-1541-3193"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiali Zhu","raw_affiliation_strings":["School of Medicine, Tongji University, Shanghai 200092, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068691279","display_name":"Jieling Qin","orcid":"https://orcid.org/0000-0002-2596-8400"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I4210132741","display_name":"Shanghai Tenth People's Hospital","ror":"https://ror.org/03vjkf643","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210132741"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jieling Qin","raw_affiliation_strings":["Tongji University Cancer Center, Shanghai Tenth People's Hospital, School of Medicine, Tongji University, Shanghai 200092, China"],"raw_orcid":"https://orcid.org/0000-0002-2596-8400","affiliations":[{"raw_affiliation_string":"Tongji University Cancer Center, Shanghai Tenth People's Hospital, School of Medicine, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I4210132741","https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100453248","display_name":"Qi Liu","orcid":"https://orcid.org/0000-0003-2578-1221"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qi Liu","raw_affiliation_strings":["School of Life Sciences and Technology, Tongji University, Shanghai 200092, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences and Technology, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100338651","display_name":"Ping Wang","orcid":"https://orcid.org/0000-0002-3851-2779"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I4210132741","display_name":"Shanghai Tenth People's Hospital","ror":"https://ror.org/03vjkf643","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210132741"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ping Wang","raw_affiliation_strings":["Tongji University Cancer Center, Shanghai Tenth People's Hospital, School of Medicine, Tongji University, Shanghai 200092, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tongji University Cancer Center, Shanghai Tenth People's Hospital, School of Medicine, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I4210132741","https://openalex.org/I116953780"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5068691279","https://openalex.org/A5100338651","https://openalex.org/A5100453248"],"corresponding_institution_ids":["https://openalex.org/I116953780","https://openalex.org/I4210132741"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.12765657,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crispr","display_name":"CRISPR","score":0.901314914226532},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6496593356132507},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5165194869041443},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5051200985908508},{"id":"https://openalex.org/keywords/cas9","display_name":"Cas9","score":0.46879300475120544},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4394034147262573},{"id":"https://openalex.org/keywords/subgenomic-mrna","display_name":"Subgenomic mRNA","score":0.4296822249889374},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.4277503490447998},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42446255683898926},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.4131813943386078},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2990638017654419},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.2946970462799072},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20949935913085938},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20681768655776978},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1987919807434082},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18193292617797852}],"concepts":[{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.901314914226532},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6496593356132507},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5165194869041443},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5051200985908508},{"id":"https://openalex.org/C132455925","wikidata":"https://www.wikidata.org/wiki/Q16965677","display_name":"Cas9","level":4,"score":0.46879300475120544},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4394034147262573},{"id":"https://openalex.org/C189819185","wikidata":"https://www.wikidata.org/wiki/Q384283","display_name":"Subgenomic mRNA","level":4,"score":0.4296822249889374},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.4277503490447998},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42446255683898926},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.4131813943386078},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2990638017654419},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2946970462799072},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20949935913085938},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20681768655776978},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1987919807434082},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18193292617797852},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000094704","descriptor_name":"RNA, Guide, CRISPR-Cas Systems","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000094704","descriptor_name":"RNA, Guide, CRISPR-Cas Systems","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000094704","descriptor_name":"RNA, Guide, CRISPR-Cas Systems","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000094704","descriptor_name":"RNA, Guide, CRISPR-Cas Systems","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000094704","descriptor_name":"RNA, Guide, CRISPR-Cas Systems","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000094704","descriptor_name":"RNA, Guide, CRISPR-Cas Systems","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017394","descriptor_name":"RNA, Guide, Kinetoplastida","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017394","descriptor_name":"RNA, Guide, Kinetoplastida","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab505","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab505","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34905767","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34905767","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1497802034","display_name":null,"funder_award_id":"82003150","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3015082034","display_name":null,"funder_award_id":"22120210316","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G5669336161","display_name":null,"funder_award_id":"31920103007","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6432759267","display_name":null,"funder_award_id":"22120210406","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G867012295","display_name":null,"funder_award_id":"31800757","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1977709885","https://openalex.org/W1982846895","https://openalex.org/W1998240361","https://openalex.org/W2005219014","https://openalex.org/W2011301426","https://openalex.org/W2014721239","https://openalex.org/W2048607934","https://openalex.org/W2058762628","https://openalex.org/W2059864757","https://openalex.org/W2064815984","https://openalex.org/W2101234009","https://openalex.org/W2110065044","https://openalex.org/W2138164217","https://openalex.org/W2146511318","https://openalex.org/W2150868464","https://openalex.org/W2162996511","https://openalex.org/W2168327939","https://openalex.org/W2338215681","https://openalex.org/W2736368501","https://openalex.org/W2770300757","https://openalex.org/W2888908334","https://openalex.org/W2897409799","https://openalex.org/W2940996965","https://openalex.org/W2944907759","https://openalex.org/W2947777875","https://openalex.org/W2950723166","https://openalex.org/W3003257820","https://openalex.org/W3011425199","https://openalex.org/W3035965352","https://openalex.org/W3099878876","https://openalex.org/W3150635270","https://openalex.org/W4294216483","https://openalex.org/W6643284055","https://openalex.org/W6675212800","https://openalex.org/W6675354045","https://openalex.org/W6685407180","https://openalex.org/W6695237428","https://openalex.org/W6712783260","https://openalex.org/W6771270596","https://openalex.org/W6771623096","https://openalex.org/W6792352245","https://openalex.org/W6800123988"],"related_works":["https://openalex.org/W2615218473","https://openalex.org/W3081777379","https://openalex.org/W3040709352","https://openalex.org/W2977624170","https://openalex.org/W2605577322","https://openalex.org/W2810220889","https://openalex.org/W4307138640","https://openalex.org/W4366132770","https://openalex.org/W2615346513","https://openalex.org/W2187271039"],"abstract_inverted_index":{"Clustered":[0],"regularly":[1],"interspaced":[2],"short":[3],"palindromic":[4],"repeats":[5],"associated":[6],"protein":[7],"9":[8],"(CRISPR/Cas9)":[9],"technology":[10,27],"has":[11,117],"become":[12],"a":[13,52,113,138],"popular":[14],"tool":[15,188],"for":[16,39,176,189],"the":[17,23,123,131,184],"study":[18],"of":[19,25,33,64,158],"genome":[20],"function,":[21],"and":[22,79,95,99,109,152,167,174,186],"use":[24],"this":[26,56],"can":[28,73,170],"achieve":[29],"large-scale":[30],"screening":[31,41,126,191],"studies":[32],"specific":[34],"phenotypes.":[35],"Several":[36],"analysis":[37,63],"tools":[38],"CRISPR/Cas9":[40,125],"data":[42,93,105,192],"have":[43],"been":[44,118],"developed,":[45],"while":[46],"high":[47],"false":[48,69,76],"positive":[49,70,77],"rate":[50],"remains":[51],"great":[53],"challenge.":[54],"To":[55],"end,":[57],"we":[58,129],"developed":[59],"iCRISEE,":[60,159],"an":[61],"integrative":[62],"CRISPR":[65,190],"ScrEEn":[66],"by":[67,90],"reducing":[68],"hits.":[71],"iCRISEE":[72,180,194],"dramatically":[74],"reduce":[75],"hits":[78],"it":[80],"is":[81,195],"robust":[82],"to":[83,120,182],"different":[84],"single":[85],"guide":[86],"RNA":[87],"(sgRNA)":[88],"library":[89],"introducing":[91],"precise":[92],"filter":[94],"normalization,":[96],"model":[97],"selection":[98],"valid":[100],"sgRNA":[101,107,144,146,148,165],"number":[102],"correction":[103],"in":[104,134],"preprocessing,":[106],"ranking":[108,151,166],"gene":[110,150,168],"ranking.":[111],"Furthermore,":[112],"powerful":[114],"web":[115],"server":[116],"presented":[119],"automatically":[121],"complete":[122],"whole":[124],"analysis,":[127],"where":[128],"integrated":[130],"main":[132],"hypothesis":[133],"multiple":[135],"algorithms":[136],"as":[137],"full":[139],"workflow,":[140],"including":[141,160],"quality":[142],"control,":[143],"extracting,":[145],"alignment,":[147],"ranking,":[149,169],"pathway":[153],"enrichment.":[154],"In":[155],"addition,":[156],"output":[157],"result":[161],"mapping,":[162],"sample":[163],"clustering,":[164],"be":[171,183],"easily":[172],"visualized":[173],"downloaded":[175],"publication.":[177],"Taking":[178],"together,":[179],"presents":[181],"state-of-the-art":[185],"user-friendly":[187],"analysis.":[193],"available":[196],"at":[197],"https://www.icrisee.com.":[198]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
