{"id":"https://openalex.org/W4200175423","doi":"https://doi.org/10.1093/bib/bbab486","title":"iRice-MS: An integrated XGBoost model for detecting multitype post-translational modification sites in rice","display_name":"iRice-MS: An integrated XGBoost model for detecting multitype post-translational modification sites in rice","publication_year":2021,"publication_date":"2021-10-26","ids":{"openalex":"https://openalex.org/W4200175423","doi":"https://doi.org/10.1093/bib/bbab486","pmid":"https://pubmed.ncbi.nlm.nih.gov/34864888"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab486","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab486","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025728076","display_name":"Hao Lv","orcid":"https://orcid.org/0000-0002-7580-0155"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Lv","raw_affiliation_strings":["Center for Informational Biology at University of Electronic Science and Technology of China, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Informational Biology at University of Electronic Science and Technology of China, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100354636","display_name":"Yang Zhang","orcid":"https://orcid.org/0000-0002-1317-120X"},"institutions":[{"id":"https://openalex.org/I53411278","display_name":"Chengdu University of Traditional Chinese Medicine","ror":"https://ror.org/00pcrz470","country_code":"CN","type":"education","lineage":["https://openalex.org/I53411278"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Zhang","raw_affiliation_strings":["Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, China","institution_ids":["https://openalex.org/I53411278"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053652161","display_name":"Jia-Shu Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jia-Shu Wang","raw_affiliation_strings":["Center for Informational Biology at University of Electronic Science and Technology of China, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Informational Biology at University of Electronic Science and Technology of China, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045779253","display_name":"Shi-Shi Yuan","orcid":"https://orcid.org/0000-0003-3068-8849"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shi-Shi Yuan","raw_affiliation_strings":["Center for Informational Biology at University of Electronic Science and Technology of China, China"],"raw_orcid":"https://orcid.org/0000-0003-3068-8849","affiliations":[{"raw_affiliation_string":"Center for Informational Biology at University of Electronic Science and Technology of China, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041501837","display_name":"Zi\u2010Jie Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zi-Jie Sun","raw_affiliation_strings":["Center for Informational Biology at University of Electronic Science and Technology of China, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Informational Biology at University of Electronic Science and Technology of China, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050257316","display_name":"Fanny Dao","orcid":"https://orcid.org/0000-0001-5285-6044"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fu-Ying Dao","raw_affiliation_strings":["Center for Informational Biology at University of Electronic Science and Technology of China, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Informational Biology at University of Electronic Science and Technology of China, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015758714","display_name":"Zheng-Xing Guan","orcid":null},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheng-Xing Guan","raw_affiliation_strings":["Center for Informational Biology at University of Electronic Science and Technology of China, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Informational Biology at University of Electronic Science and Technology of China, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041539298","display_name":"Hao Lin","orcid":"https://orcid.org/0000-0001-6265-2862"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hao Lin","raw_affiliation_strings":["Center for Informational Biology at University of Electronic Science and Technology of China, China"],"raw_orcid":"https://orcid.org/0000-0001-6265-2862","affiliations":[{"raw_affiliation_string":"Center for Informational Biology at University of Electronic Science and Technology of China, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021812514","display_name":"Kejun Deng","orcid":"https://orcid.org/0000-0003-0411-549X"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ke-Jun Deng","raw_affiliation_strings":["Center for Informational Biology at University of Electronic Science and Technology of China, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Informational Biology at University of Electronic Science and Technology of China, China","institution_ids":["https://openalex.org/I150229711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5021812514","https://openalex.org/A5041539298"],"corresponding_institution_ids":["https://openalex.org/I150229711"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.7446,"has_fulltext":false,"cited_by_count":31,"citation_normalized_percentile":{"value":0.85461095,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/posttranslational-modification","display_name":"Posttranslational modification","score":0.7148733735084534},{"id":"https://openalex.org/keywords/succinylation","display_name":"Succinylation","score":0.6949411034584045},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6526657342910767},{"id":"https://openalex.org/keywords/acetylation","display_name":"Acetylation","score":0.5443496108055115},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.509503185749054},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45996174216270447},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.43479570746421814},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43417754769325256},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3490530550479889},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3397129774093628},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2351054847240448},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21695491671562195},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.17349940538406372},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.15413549542427063},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10593298077583313}],"concepts":[{"id":"https://openalex.org/C100631289","wikidata":"https://www.wikidata.org/wiki/Q898362","display_name":"Posttranslational modification","level":3,"score":0.7148733735084534},{"id":"https://openalex.org/C12290205","wikidata":"https://www.wikidata.org/wiki/Q22284030","display_name":"Succinylation","level":4,"score":0.6949411034584045},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6526657342910767},{"id":"https://openalex.org/C119157956","wikidata":"https://www.wikidata.org/wiki/Q796604","display_name":"Acetylation","level":3,"score":0.5443496108055115},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.509503185749054},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45996174216270447},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.43479570746421814},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43417754769325256},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3490530550479889},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3397129774093628},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2351054847240448},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21695491671562195},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.17349940538406372},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.15413549542427063},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10593298077583313},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000107","descriptor_name":"Acetylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000107","descriptor_name":"Acetylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000107","descriptor_name":"Acetylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab486","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab486","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34864888","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34864888","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1739709948","display_name":"\u57fa\u4e8e\u8868\u89c2\u9057\u4f20\u548c\u957f\u7a0b\u5173\u8054\u4fe1\u606f\u7684\u4eba\u7c7b\u57fa\u56e0\u7ec4\u590d\u5236/\u8f6c\u5f55\u8d77\u59cb\u4f4d\u70b9\u8bc6\u522b\u4e0e\u5076\u8054\u673a\u5236\u5206\u6790","funder_award_id":"61772119","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G569313445","display_name":null,"funder_award_id":"20JCQN0262","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6498967737","display_name":null,"funder_award_id":"81872957","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":68,"referenced_works":["https://openalex.org/W1975581502","https://openalex.org/W1979408355","https://openalex.org/W2000371303","https://openalex.org/W2009826707","https://openalex.org/W2013853442","https://openalex.org/W2034614265","https://openalex.org/W2046301798","https://openalex.org/W2059926522","https://openalex.org/W2064712921","https://openalex.org/W2103404876","https://openalex.org/W2115862579","https://openalex.org/W2116062594","https://openalex.org/W2133797106","https://openalex.org/W2141818629","https://openalex.org/W2148741118","https://openalex.org/W2151984950","https://openalex.org/W2170747616","https://openalex.org/W2177350252","https://openalex.org/W2254740876","https://openalex.org/W2276368161","https://openalex.org/W2295598076","https://openalex.org/W2558091742","https://openalex.org/W2569814361","https://openalex.org/W2610582292","https://openalex.org/W2753894224","https://openalex.org/W2767877310","https://openalex.org/W2768826694","https://openalex.org/W2774442672","https://openalex.org/W2805952346","https://openalex.org/W2883294189","https://openalex.org/W2886676494","https://openalex.org/W2893392502","https://openalex.org/W2901879913","https://openalex.org/W2910654431","https://openalex.org/W2953169496","https://openalex.org/W2955848125","https://openalex.org/W2964235236","https://openalex.org/W2969993699","https://openalex.org/W2972211546","https://openalex.org/W2980057552","https://openalex.org/W2980502849","https://openalex.org/W2984274952","https://openalex.org/W2991574260","https://openalex.org/W2999580270","https://openalex.org/W3004562156","https://openalex.org/W3007233865","https://openalex.org/W3007999337","https://openalex.org/W3008014363","https://openalex.org/W3012353262","https://openalex.org/W3020537178","https://openalex.org/W3031875037","https://openalex.org/W3037745249","https://openalex.org/W3047705148","https://openalex.org/W3048991675","https://openalex.org/W3082590494","https://openalex.org/W3084410714","https://openalex.org/W3093120804","https://openalex.org/W3094567318","https://openalex.org/W3096599265","https://openalex.org/W3096599651","https://openalex.org/W3110500364","https://openalex.org/W3116452748","https://openalex.org/W3125157949","https://openalex.org/W3128972055","https://openalex.org/W3162632405","https://openalex.org/W6781991850","https://openalex.org/W6785345244","https://openalex.org/W6794947365"],"related_works":["https://openalex.org/W2796877990","https://openalex.org/W3200232281","https://openalex.org/W2770715722","https://openalex.org/W2724145149","https://openalex.org/W3156776868","https://openalex.org/W2508262787","https://openalex.org/W2772673611","https://openalex.org/W4376619759","https://openalex.org/W3196044908","https://openalex.org/W4225992563"],"abstract_inverted_index":{"Post-translational":[0],"modification":[1,9],"(PTM)":[2],"refers":[3],"to":[4,34,56,128],"the":[5,31,126,139],"covalent":[6],"and":[7,63,83,97,116,149],"enzymatic":[8],"of":[10,19,30,134],"proteins":[11],"after":[12],"protein":[13],"biosynthesis,":[14],"which":[15],"orchestrates":[16],"a":[17,142],"variety":[18],"biological":[20],"processes.":[21],"Detecting":[22],"PTM":[23],"sites":[24],"in":[25,65,132],"proteome":[26],"scale":[27],"is":[28,150],"one":[29],"key":[32],"steps":[33],"in-depth":[35],"understanding":[36],"their":[37,98],"regulation":[38],"mechanisms.":[39],"In":[40,120],"this":[41],"study,":[42],"we":[43,71],"presented":[44],"an":[45],"integrated":[46],"method":[47],"based":[48],"on":[49,113,138],"eXtreme":[50],"Gradient":[51],"Boosting":[52],"(XGBoost),":[53],"called":[54],"iRice-MS,":[55],"identify":[57],"2-hydroxyisobutyrylation,":[58],"crotonylation,":[59],"malonylation,":[60],"ubiquitination,":[61],"succinylation":[62],"acetylation":[64],"rice.":[66],"For":[67],"each":[68,95],"PTM-specific":[69],"model,":[70,141],"adopted":[72],"eight":[73],"feature":[74,90],"encoding":[75],"schemes,":[76],"including":[77],"sequence-based":[78],"features,":[79],"physicochemical":[80],"property-based":[81],"features":[82],"spatial":[84],"mapping":[85],"information-based":[86],"features.":[87],"The":[88],"optimal":[89],"set":[91],"was":[92,147],"identified":[93],"from":[94],"encoding,":[96],"respective":[99],"models":[100],"were":[101],"established.":[102],"Extensive":[103],"experimental":[104],"results":[105],"show":[106],"that":[107],"iRice-MS":[108,146],"always":[109],"display":[110],"excellent":[111],"performance":[112],"5-fold":[114],"cross-validation":[115],"independent":[117],"dataset":[118],"test.":[119],"addition,":[121],"our":[122],"novel":[123],"approach":[124],"provides":[125],"superiority":[127],"other":[129],"existing":[130],"tools":[131],"terms":[133],"AUC":[135],"value.":[136],"Based":[137],"proposed":[140],"web":[143],"server":[144],"named":[145],"established":[148],"freely":[151],"accessible":[152],"at":[153],"http://lin-group.cn/server/iRice-MS.":[154]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":9}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
