{"id":"https://openalex.org/W3215214505","doi":"https://doi.org/10.1093/bib/bbab478","title":"Managing the life cycle of a portfolio of open data resources at the SIB Swiss Institute of Bioinformatics","display_name":"Managing the life cycle of a portfolio of open data resources at the SIB Swiss Institute of Bioinformatics","publication_year":2021,"publication_date":"2021-10-19","ids":{"openalex":"https://openalex.org/W3215214505","doi":"https://doi.org/10.1093/bib/bbab478","mag":"3215214505"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab478","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab478","pdf_url":"https://academic.oup.com/bib/article-pdf/23/1/bbab478/42231191/bbab478.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","datacite","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/23/1/bbab478/42231191/bbab478.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033626350","display_name":"Chiara Gabella","orcid":"https://orcid.org/0000-0002-7104-5025"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Chiara Gabella","raw_affiliation_strings":["Severine DuvaudSIB Swiss Institute of Bioinformatics, Quartier Sorge - B\u00e2timent Amphip\u00f4le, CH-1015 Lausanne, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-7104-5025","affiliations":[{"raw_affiliation_string":"Severine DuvaudSIB Swiss Institute of Bioinformatics, Quartier Sorge - B\u00e2timent Amphip\u00f4le, CH-1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012838234","display_name":"S\u00e9verine Duvaud","orcid":"https://orcid.org/0000-0001-7892-9678"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Severine Duvaud","raw_affiliation_strings":["Severine DuvaudSIB Swiss Institute of Bioinformatics, Quartier Sorge - B\u00e2timent Amphip\u00f4le, CH-1015 Lausanne, Switzerland"],"raw_orcid":"https://orcid.org/0000-0001-7892-9678","affiliations":[{"raw_affiliation_string":"Severine DuvaudSIB Swiss Institute of Bioinformatics, Quartier Sorge - B\u00e2timent Amphip\u00f4le, CH-1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016358274","display_name":"Christine Durinx","orcid":"https://orcid.org/0000-0003-4237-8899"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Christine Durinx","raw_affiliation_strings":["Severine DuvaudSIB Swiss Institute of Bioinformatics, Quartier Sorge - B\u00e2timent Amphip\u00f4le, CH-1015 Lausanne, Switzerland"],"raw_orcid":"https://orcid.org/0000-0003-4237-8899","affiliations":[{"raw_affiliation_string":"Severine DuvaudSIB Swiss Institute of Bioinformatics, Quartier Sorge - B\u00e2timent Amphip\u00f4le, CH-1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5012838234"],"corresponding_institution_ids":["https://openalex.org/I12708293"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.022,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.9228897,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8093315958976746},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5713053941726685},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5588727593421936},{"id":"https://openalex.org/keywords/portfolio","display_name":"Portfolio","score":0.5428292155265808},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49168282747268677},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4398425221443176},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.4373684227466583},{"id":"https://openalex.org/keywords/return-on-investment","display_name":"Return on investment","score":0.43593835830688477},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.4090280830860138},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3291851282119751},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.20341265201568604},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11889266967773438}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8093315958976746},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5713053941726685},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5588727593421936},{"id":"https://openalex.org/C2780821815","wikidata":"https://www.wikidata.org/wiki/Q5340806","display_name":"Portfolio","level":2,"score":0.5428292155265808},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49168282747268677},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4398425221443176},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4373684227466583},{"id":"https://openalex.org/C169549615","wikidata":"https://www.wikidata.org/wiki/Q939134","display_name":"Return on investment","level":3,"score":0.43593835830688477},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.4090280830860138},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3291851282119751},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.20341265201568604},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11889266967773438},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C2778348673","wikidata":"https://www.wikidata.org/wiki/Q739302","display_name":"Production (economics)","level":2,"score":0.0},{"id":"https://openalex.org/C139719470","wikidata":"https://www.wikidata.org/wiki/Q39680","display_name":"Macroeconomics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbab478","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab478","pdf_url":"https://academic.oup.com/bib/article-pdf/23/1/bbab478/42231191/bbab478.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:infoscience.epfl.ch:293621","is_oa":true,"landing_page_url":"https://infoscience.epfl.ch/handle/20.500.14299/187352","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"review"},{"id":"pmh:oai:pubmedcentral.nih.gov:8769900","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8769900","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"doi:10.5281/zenodo.17184970","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17184970","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.5281/zenodo.17184971","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17184971","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bib/bbab478","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab478","pdf_url":"https://academic.oup.com/bib/article-pdf/23/1/bbab478/42231191/bbab478.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.5400000214576721,"display_name":"Responsible consumption and production"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335238","display_name":"Staatssekretariat f\u00fcr Bildung, Forschung und Innovation","ror":"https://ror.org/01kw63t33"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3215214505.pdf","grobid_xml":"https://content.openalex.org/works/W3215214505.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1495890774","https://openalex.org/W2117306286","https://openalex.org/W2171895522","https://openalex.org/W2525035644","https://openalex.org/W2592562685","https://openalex.org/W2768452060","https://openalex.org/W2804822363","https://openalex.org/W2887377515","https://openalex.org/W2900569176","https://openalex.org/W2952894920","https://openalex.org/W2999321803","https://openalex.org/W3120914506","https://openalex.org/W3125012412","https://openalex.org/W3136918052","https://openalex.org/W3156288747","https://openalex.org/W3160024651","https://openalex.org/W4229527776","https://openalex.org/W4287725111"],"related_works":["https://openalex.org/W24553703","https://openalex.org/W4211000692","https://openalex.org/W4212920271","https://openalex.org/W2612240612","https://openalex.org/W4211208250","https://openalex.org/W4211054902","https://openalex.org/W2170381940","https://openalex.org/W2472351724","https://openalex.org/W3145366215","https://openalex.org/W2794196637"],"abstract_inverted_index":{"Abstract":[0],"Data":[1],"resources":[2,69,158,191,225],"are":[3,70,87,215],"essential":[4],"for":[5,164],"the":[6,13,24,49,73,116,142,154,161,165,173,190,205,218,229],"long-term":[7],"preservation":[8],"of":[9,15,21,31,48,105,144,156,170,181],"scientific":[10,85],"data":[11,157],"and":[12,36,52,60,83,137,149,168,172,192,200,213,238,242],"reproducibility":[14],"science.":[16,244],"The":[17],"SIB":[18,92,140,177],"Swiss":[19],"Institute":[20],"Bioinformatics":[22],"provides":[23,93],"life":[25],"science":[26],"community":[27],"with":[28,102,123],"a":[29,103],"portfolio":[30],"openly":[32],"accessible,":[33],"high-quality":[34],"databases":[35,214],"software":[37],"platforms,":[38],"which":[39],"vary":[40],"from":[41,235],"expert-curated":[42],"knowledgebases,":[43],"such":[44,57,126],"as":[45,58,76,78,127],"UniProtKB/Swiss-Prot":[46],"(part":[47],"UniProt":[50],"consortium)":[51],"STRING,":[53],"to":[54,65,98,111,188,222,227,240],"online":[55],"platforms":[56],"SWISS-MODEL":[59],"SwissDrugDesign.":[61],"SIB\u2019s":[62,210],"mission":[63],"is":[64],"ensure":[66],"that":[67,109,176,232],"these":[68],"available":[71],"in":[72,96,115,146,186],"long":[74,77],"term,":[75],"their":[79,84,197],"return":[80],"on":[81],"investment":[82],"impact":[86],"high.":[88],"To":[89],"this":[90,119,203],"end,":[91],"its":[94],"resources,":[95],"addition":[97],"stable":[99],"financial":[100],"support,":[101,132],"range":[104],"high-quality,":[106],"innovative":[107],"services":[108],"are,":[110],"our":[112],"knowledge,":[113],"unique":[114],"field.":[117],"Through":[118,202],"first-class":[120],"management":[121],"framework":[122],"central":[124],"services,":[125],"user-centric":[128],"consulting":[129],"activities,":[130],"legal":[131],"open-science":[133],"guidance,":[134],"knowledge":[135],"sharing":[136],"training":[138],"efforts,":[139],"supports":[141],"promotion":[143],"excellence":[145],"resource":[147],"development":[148,169],"operation.":[150],"This":[151],"review":[152],"presents":[153],"ecosystem":[155],"at":[159],"SIB;":[160],"process":[162],"used":[163],"identification,":[166],"evaluation":[167],"resources;":[171],"support":[174],"activities":[175],"provides.":[178],"A":[179],"set":[180],"indicators":[182],"has":[183],"been":[184],"put":[185],"place":[187],"select":[189],"establish":[193],"quality":[194],"standards,":[195],"reflecting":[196],"multifaceted":[198],"nature":[199],"complexity.":[201],"paper,":[204],"reader":[206],"will":[207],"discover":[208],"how":[209],"leading":[211,220],"tools":[212],"fostered":[216],"by":[217],"institute,":[219],"them":[221],"be":[223],"best-in-class":[224],"able":[226],"tackle":[228],"burning":[230],"matters":[231],"society":[233],"faces":[234],"disease":[236],"outbreaks":[237],"cancer":[239],"biodiversity":[241],"open":[243]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2021-12-06T00:00:00"}
