{"id":"https://openalex.org/W3217466685","doi":"https://doi.org/10.1093/bib/bbab477","title":"iProbiotics: a machine learning platform for rapid identification of probiotic properties from whole-genome primary sequences","display_name":"iProbiotics: a machine learning platform for rapid identification of probiotic properties from whole-genome primary sequences","publication_year":2021,"publication_date":"2021-10-18","ids":{"openalex":"https://openalex.org/W3217466685","doi":"https://doi.org/10.1093/bib/bbab477","mag":"3217466685","pmid":"https://pubmed.ncbi.nlm.nih.gov/34849572"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab477","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab477","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101667837","display_name":"Yu Sun","orcid":"https://orcid.org/0009-0000-1041-6593"},"institutions":[{"id":"https://openalex.org/I2722730","display_name":"Inner Mongolia University","ror":"https://ror.org/0106qb496","country_code":"CN","type":"education","lineage":["https://openalex.org/I2722730"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Sun","raw_affiliation_strings":["State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University, Hohhot 010070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University, Hohhot 010070, China","institution_ids":["https://openalex.org/I2722730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012399528","display_name":"Haicheng Li","orcid":"https://orcid.org/0000-0002-7268-6967"},"institutions":[{"id":"https://openalex.org/I2722730","display_name":"Inner Mongolia University","ror":"https://ror.org/0106qb496","country_code":"CN","type":"education","lineage":["https://openalex.org/I2722730"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haicheng Li","raw_affiliation_strings":["State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University, Hohhot 010070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University, Hohhot 010070, China","institution_ids":["https://openalex.org/I2722730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100783400","display_name":"Lei Zheng","orcid":"https://orcid.org/0000-0001-8688-2603"},"institutions":[{"id":"https://openalex.org/I2722730","display_name":"Inner Mongolia University","ror":"https://ror.org/0106qb496","country_code":"CN","type":"education","lineage":["https://openalex.org/I2722730"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Zheng","raw_affiliation_strings":["State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University, Hohhot 010070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University, Hohhot 010070, China","institution_ids":["https://openalex.org/I2722730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101763968","display_name":"Jinzhao Li","orcid":"https://orcid.org/0009-0005-3700-5483"},"institutions":[{"id":"https://openalex.org/I2722730","display_name":"Inner Mongolia University","ror":"https://ror.org/0106qb496","country_code":"CN","type":"education","lineage":["https://openalex.org/I2722730"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinzhao Li","raw_affiliation_strings":["State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University, Hohhot 010070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University, Hohhot 010070, China","institution_ids":["https://openalex.org/I2722730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049938568","display_name":"Yan Hong","orcid":"https://orcid.org/0000-0001-8206-905X"},"institutions":[{"id":"https://openalex.org/I2722730","display_name":"Inner Mongolia University","ror":"https://ror.org/0106qb496","country_code":"CN","type":"education","lineage":["https://openalex.org/I2722730"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Hong","raw_affiliation_strings":["State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University, Hohhot 010070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University, Hohhot 010070, China","institution_ids":["https://openalex.org/I2722730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101856804","display_name":"Pengfei Liang","orcid":"https://orcid.org/0000-0001-9541-9485"},"institutions":[{"id":"https://openalex.org/I2722730","display_name":"Inner Mongolia University","ror":"https://ror.org/0106qb496","country_code":"CN","type":"education","lineage":["https://openalex.org/I2722730"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengfei Liang","raw_affiliation_strings":["State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University, Hohhot 010070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University, Hohhot 010070, China","institution_ids":["https://openalex.org/I2722730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015115100","display_name":"Lai\u2010Yu Kwok","orcid":"https://orcid.org/0000-0001-8791-1269"},"institutions":[{"id":"https://openalex.org/I120379545","display_name":"Inner Mongolia Agricultural University","ror":"https://ror.org/015d0jq83","country_code":"CN","type":"education","lineage":["https://openalex.org/I120379545"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lai-Yu Kwok","raw_affiliation_strings":["Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education, Inner Mongolia Agricultural University, Hohhot 010018, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education, Inner Mongolia Agricultural University, Hohhot 010018, China","institution_ids":["https://openalex.org/I120379545"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001300435","display_name":"Yongchun Zuo","orcid":"https://orcid.org/0000-0002-6065-7835"},"institutions":[{"id":"https://openalex.org/I2722730","display_name":"Inner Mongolia University","ror":"https://ror.org/0106qb496","country_code":"CN","type":"education","lineage":["https://openalex.org/I2722730"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yongchun Zuo","raw_affiliation_strings":["State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University, Hohhot 010070, China"],"raw_orcid":"https://orcid.org/0000-0002-6065-7835","affiliations":[{"raw_affiliation_string":"State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of life sciences, Inner Mongolia University, Hohhot 010070, China","institution_ids":["https://openalex.org/I2722730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100360013","display_name":"Wenyi Zhang","orcid":"https://orcid.org/0000-0001-5530-4210"},"institutions":[{"id":"https://openalex.org/I120379545","display_name":"Inner Mongolia Agricultural University","ror":"https://ror.org/015d0jq83","country_code":"CN","type":"education","lineage":["https://openalex.org/I120379545"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wenyi Zhang","raw_affiliation_strings":["Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education, Inner Mongolia Agricultural University, Hohhot 010018, China"],"raw_orcid":"https://orcid.org/0000-0001-5530-4210","affiliations":[{"raw_affiliation_string":"Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education, Inner Mongolia Agricultural University, Hohhot 010018, China","institution_ids":["https://openalex.org/I120379545"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111626147","display_name":"Heping Zhang","orcid":"https://orcid.org/0000-0003-4329-8006"},"institutions":[{"id":"https://openalex.org/I120379545","display_name":"Inner Mongolia Agricultural University","ror":"https://ror.org/015d0jq83","country_code":"CN","type":"education","lineage":["https://openalex.org/I120379545"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Heping Zhang","raw_affiliation_strings":["Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education, Inner Mongolia Agricultural University, Hohhot 010018, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education, Inner Mongolia Agricultural University, Hohhot 010018, China","institution_ids":["https://openalex.org/I120379545"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5001300435","https://openalex.org/A5100360013","https://openalex.org/A5111626147"],"corresponding_institution_ids":["https://openalex.org/I120379545","https://openalex.org/I2722730"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":7.6809,"has_fulltext":false,"cited_by_count":103,"citation_normalized_percentile":{"value":0.97871929,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7437638640403748},{"id":"https://openalex.org/keywords/probiotic","display_name":"Probiotic","score":0.7104411721229553},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5460746884346008},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5332204103469849},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4855673015117645},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39558055996894836},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36515820026397705},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19449496269226074},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10878115892410278},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.07588648796081543}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7437638640403748},{"id":"https://openalex.org/C2780255968","wikidata":"https://www.wikidata.org/wiki/Q1816730","display_name":"Probiotic","level":3,"score":0.7104411721229553},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5460746884346008},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5332204103469849},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4855673015117645},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39558055996894836},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36515820026397705},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19449496269226074},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10878115892410278},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.07588648796081543},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019936","descriptor_name":"Probiotics","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D019936","descriptor_name":"Probiotics","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D019936","descriptor_name":"Probiotics","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab477","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab477","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34849572","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34849572","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4172898863","display_name":"\u6574\u5408\u7f51\u7edc\u5206\u6790\u7b97\u6cd5\u9884\u6d4b\u7ec6\u80de\u7f16\u7a0b\u548c\u91cd\u7f16\u7a0b\u5148\u950b\u9a71\u52a8\u56e0\u5b50\u7684\u7814\u7a76","funder_award_id":"62061034","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8946256760","display_name":null,"funder_award_id":"31922071","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":76,"referenced_works":["https://openalex.org/W1484777458","https://openalex.org/W1975219533","https://openalex.org/W2009304500","https://openalex.org/W2027617880","https://openalex.org/W2031965772","https://openalex.org/W2052134408","https://openalex.org/W2056516527","https://openalex.org/W2099837668","https://openalex.org/W2115540208","https://openalex.org/W2119497560","https://openalex.org/W2122559203","https://openalex.org/W2142428670","https://openalex.org/W2148603752","https://openalex.org/W2148652658","https://openalex.org/W2150782426","https://openalex.org/W2153635508","https://openalex.org/W2160579940","https://openalex.org/W2252654268","https://openalex.org/W2345583598","https://openalex.org/W2358805165","https://openalex.org/W2516811335","https://openalex.org/W2598849564","https://openalex.org/W2732139758","https://openalex.org/W2737522029","https://openalex.org/W2737592062","https://openalex.org/W2740851935","https://openalex.org/W2749959226","https://openalex.org/W2758005814","https://openalex.org/W2762755002","https://openalex.org/W2764250143","https://openalex.org/W2766732376","https://openalex.org/W2794776675","https://openalex.org/W2804265115","https://openalex.org/W2885853345","https://openalex.org/W2886703480","https://openalex.org/W2891338592","https://openalex.org/W2906446542","https://openalex.org/W2913461484","https://openalex.org/W2913914265","https://openalex.org/W2937090594","https://openalex.org/W2940275179","https://openalex.org/W2943320595","https://openalex.org/W2949453554","https://openalex.org/W2952667999","https://openalex.org/W2954174472","https://openalex.org/W2954850634","https://openalex.org/W2956175090","https://openalex.org/W2962038738","https://openalex.org/W2963156603","https://openalex.org/W2970482505","https://openalex.org/W2986476597","https://openalex.org/W2988309519","https://openalex.org/W2990249310","https://openalex.org/W2991458803","https://openalex.org/W3005444990","https://openalex.org/W3005560263","https://openalex.org/W3022489467","https://openalex.org/W3022704604","https://openalex.org/W3041089282","https://openalex.org/W3041779151","https://openalex.org/W3041959865","https://openalex.org/W3046754742","https://openalex.org/W3080773717","https://openalex.org/W3086599546","https://openalex.org/W3093229296","https://openalex.org/W3093451665","https://openalex.org/W3112889838","https://openalex.org/W3120569827","https://openalex.org/W3125745788","https://openalex.org/W3135522947","https://openalex.org/W3137447770","https://openalex.org/W3164115955","https://openalex.org/W3178750613","https://openalex.org/W4206788219","https://openalex.org/W4210888601","https://openalex.org/W6677396510"],"related_works":["https://openalex.org/W2984222266","https://openalex.org/W2468853327","https://openalex.org/W3174709511","https://openalex.org/W2033507994","https://openalex.org/W3037335164","https://openalex.org/W2767503609","https://openalex.org/W2065096163","https://openalex.org/W2783640880","https://openalex.org/W1694758928","https://openalex.org/W4281781496"],"abstract_inverted_index":{"Lactic":[0],"acid":[1],"bacteria":[2,13],"consortia":[3],"are":[4],"commonly":[5],"present":[6],"in":[7,44,63,97,106],"food,":[8],"and":[9,19,27,80,100,115,131,149,168,171,194,240,250],"some":[10],"of":[11,22,32,166,183,201,217,230,243],"these":[12],"possess":[14],"probiotic":[15,77,103,107,209],"properties.":[16],"However,":[17],"discovery":[18],"experimental":[20],"validation":[21],"probiotics":[23,72,218],"require":[24],"extensive":[25],"time":[26],"effort.":[28],"Therefore,":[29],"it":[30],"is":[31,219],"great":[33],"interest":[34],"to":[35,54,87,208],"develop":[36],"effective":[37],"screening":[38,260],"methods":[39],"for":[40,60,261],"identifying":[41],"probiotics.":[42,244,262],"Advances":[43],"sequencing":[45],"technology":[46],"have":[47],"generated":[48],"massive":[49],"genomic":[50,156,232],"data,":[51],"enabling":[52],"us":[53],"create":[55],"a":[56,70,144,223,228,248],"machine":[57],"learning-based":[58],"platform":[59],"such":[61],"purpose":[62],"this":[64],"work.":[65],"This":[66,245],"study":[67],"first":[68],"selected":[69],"comprehensive":[71],"genome":[73],"dataset":[74],"from":[75,160],"the":[76,132,135,152,199,215,238],"database":[78],"(PROBIO)":[79],"literature":[81],"surveys.":[82],"Then,":[83],"k-mer":[84,231],"(from":[85],"2":[86],"8)":[88],"compositional":[89],"analysis":[90,157,182],"was":[91,203],"performed,":[92],"revealing":[93],"diverse":[94],"oligonucleotide":[95],"composition":[96],"strain":[98],"genomes":[99,108],"apparently":[101],"more":[102],"(P-)":[104],"features":[105],"than":[109],"non-probiotic":[110],"genomes.":[111],"To":[112],"reduce":[113],"noise":[114],"improve":[116],"computational":[117],"efficiency,":[118],"87":[119],"376":[120],"k-mers":[121],"were":[122],"refined":[123],"by":[124,222,227],"an":[125],"incremental":[126],"feature":[127],"selection":[128],"(IFS)":[129],"method,":[130],"model":[133],"achieved":[134],"maximum":[136],"accuracy":[137,147],"level":[138],"at":[139],"184":[140],"core":[141],"features,":[142],"with":[143,186],"high":[145],"prediction":[146],"(97.77%)":[148],"area":[150],"under":[151],"curve":[153],"(98.00%).":[154],"Functional":[155],"using":[158,174],"annotations":[159],"gene":[161],"ontology":[162],"(GO),":[163],"Kyoto":[164],"Encyclopedia":[165],"Genes":[167],"Genomes":[169],"(KEGG)":[170],"Rapid":[172],"Annotation":[173],"Subsystem":[175],"Technology":[176],"(RAST)":[177],"databases,":[178],"as":[179,181],"well":[180],"genes":[184],"associated":[185],"host":[187],"gastrointestinal":[188],"survival/settlement,":[189],"carbohydrate":[190],"utilization,":[191],"drug":[192],"resistance":[193],"virulence":[195],"factors,":[196],"revealed":[197],"that":[198,214],"distribution":[200],"P-features":[202],"biased":[204],"toward":[205],"genes/pathways":[206],"related":[207],"function.":[210],"Our":[211],"results":[212],"suggest":[213],"role":[216],"not":[220],"determined":[221],"single":[224],"gene,":[225],"but":[226],"combination":[229],"components,":[233],"providing":[234],"new":[235],"insights":[236],"into":[237],"identification":[239],"underlying":[241],"mechanisms":[242],"work":[246],"created":[247],"novel":[249],"free":[251],"online":[252],"bioinformatic":[253],"tool,":[254],"iProbiotics,":[255],"which":[256],"would":[257],"facilitate":[258],"rapid":[259]},"counts_by_year":[{"year":2026,"cited_by_count":20},{"year":2025,"cited_by_count":41},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
