{"id":"https://openalex.org/W3215507963","doi":"https://doi.org/10.1093/bib/bbab471","title":"A systematic comparison of novel and existing differential analysis methods for CyTOF data","display_name":"A systematic comparison of novel and existing differential analysis methods for CyTOF data","publication_year":2021,"publication_date":"2021-10-16","ids":{"openalex":"https://openalex.org/W3215507963","doi":"https://doi.org/10.1093/bib/bbab471","mag":"3215507963","pmid":"https://pubmed.ncbi.nlm.nih.gov/34850807"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab471","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab471","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064213039","display_name":"Lis Arend","orcid":"https://orcid.org/0000-0001-7990-8385"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lis Arend","raw_affiliation_strings":["Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032713341","display_name":"Judith Bernett","orcid":"https://orcid.org/0000-0001-5812-8013"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Judith Bernett","raw_affiliation_strings":["Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070666169","display_name":"Quirin Manz","orcid":"https://orcid.org/0000-0002-5706-2718"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Quirin Manz","raw_affiliation_strings":["Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067746628","display_name":"Melissa Klug","orcid":"https://orcid.org/0000-0001-5193-2770"},"institutions":[{"id":"https://openalex.org/I2802619606","display_name":"Klinikum rechts der Isar","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"id":"https://openalex.org/I4210127591","display_name":"German Centre for Cardiovascular Research","ror":"https://ror.org/031t5w623","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127591","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Melissa Klug","raw_affiliation_strings":["Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich, Munich, Germany","Department of Internal Medicine I, School of Medicine, University Hospital rechts der Isar, Technical University of Munich, Munich, Germany","German Center for Cardiovascular Research (DZHK), Partner Site Munich Heart Alliance, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Department of Internal Medicine I, School of Medicine, University Hospital rechts der Isar, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"raw_affiliation_string":"German Center for Cardiovascular Research (DZHK), Partner Site Munich Heart Alliance, Munich, Germany","institution_ids":["https://openalex.org/I4210127591"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009350830","display_name":"Olga Lazareva","orcid":"https://orcid.org/0000-0001-9546-7807"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Olga Lazareva","raw_affiliation_strings":["Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073222532","display_name":"Jan Baumbach","orcid":"https://orcid.org/0000-0002-0282-0462"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["DE","DK"],"is_corresponding":false,"raw_author_name":"Jan Baumbach","raw_affiliation_strings":["Chair of Computational Systems Biology, University of Hamburg, Hamburg, Germany","Institute of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark"],"affiliations":[{"raw_affiliation_string":"Chair of Computational Systems Biology, University of Hamburg, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]},{"raw_affiliation_string":"Institute of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049984004","display_name":"Dario Bongiovanni","orcid":"https://orcid.org/0000-0002-4162-1482"},"institutions":[{"id":"https://openalex.org/I1339471597","display_name":"Humanitas University","ror":"https://ror.org/020dggs04","country_code":"IT","type":"education","lineage":["https://openalex.org/I1339471597"]},{"id":"https://openalex.org/I2802619606","display_name":"Klinikum rechts der Isar","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"id":"https://openalex.org/I4210127591","display_name":"German Centre for Cardiovascular Research","ror":"https://ror.org/031t5w623","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127591","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210153126","display_name":"Istituti di Ricovero e Cura a Carattere Scientifico","ror":"https://ror.org/04tfzc498","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","IT"],"is_corresponding":false,"raw_author_name":"Dario Bongiovanni","raw_affiliation_strings":["Department of Cardiovascular Medicine, Humanitas Clinical and Research Center IRCCS and Humanitas University, Rozzano, Milan, Italy","Department of Internal Medicine I, School of Medicine, University Hospital rechts der Isar, Technical University of Munich, Munich, Germany","German Center for Cardiovascular Research (DZHK), Partner Site Munich Heart Alliance, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Cardiovascular Medicine, Humanitas Clinical and Research Center IRCCS and Humanitas University, Rozzano, Milan, Italy","institution_ids":["https://openalex.org/I1339471597","https://openalex.org/I4210153126"]},{"raw_affiliation_string":"Department of Internal Medicine I, School of Medicine, University Hospital rechts der Isar, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"raw_affiliation_string":"German Center for Cardiovascular Research (DZHK), Partner Site Munich Heart Alliance, Munich, Germany","institution_ids":["https://openalex.org/I4210127591"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035928806","display_name":"Markus List","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Markus List","raw_affiliation_strings":["Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5035928806"],"corresponding_institution_ids":["https://openalex.org/I62916508"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.3796,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.8149489,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mass-cytometry","display_name":"Mass cytometry","score":0.7921602725982666},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6607602834701538},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5937079787254333},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5401706695556641},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.46921148896217346},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.46892884373664856},{"id":"https://openalex.org/keywords/differential","display_name":"Differential (mechanical device)","score":0.44487446546554565},{"id":"https://openalex.org/keywords/cytometry","display_name":"Cytometry","score":0.42513763904571533},{"id":"https://openalex.org/keywords/flow-cytometry","display_name":"Flow cytometry","score":0.2592827379703522},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20824351906776428},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.133981853723526},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13364580273628235}],"concepts":[{"id":"https://openalex.org/C2778015335","wikidata":"https://www.wikidata.org/wiki/Q17051163","display_name":"Mass cytometry","level":4,"score":0.7921602725982666},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6607602834701538},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5937079787254333},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5401706695556641},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.46921148896217346},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.46892884373664856},{"id":"https://openalex.org/C93226319","wikidata":"https://www.wikidata.org/wiki/Q193137","display_name":"Differential (mechanical device)","level":2,"score":0.44487446546554565},{"id":"https://openalex.org/C2780339063","wikidata":"https://www.wikidata.org/wiki/Q5201367","display_name":"Cytometry","level":3,"score":0.42513763904571533},{"id":"https://openalex.org/C553184892","wikidata":"https://www.wikidata.org/wiki/Q1141429","display_name":"Flow cytometry","level":2,"score":0.2592827379703522},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20824351906776428},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.133981853723526},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13364580273628235},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbab471","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab471","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34850807","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34850807","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:sdu.dk:openaire_cris_publications/9398b794-2288-4137-92ee-3aead3b33129","is_oa":false,"landing_page_url":"https://portal.findresearcher.sdu.dk/da/publications/9398b794-2288-4137-92ee-3aead3b33129","pdf_url":null,"source":{"id":"https://openalex.org/S4306400424","display_name":"University of Southern Denmark Research Portal (University of Southern Denmark)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177969490","host_organization_name":"University of Southern Denmark","host_organization_lineage":["https://openalex.org/I177969490"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Arend, L, Bernett, J, Manz, Q, Klug, M, Lazareva, O, Baumbach, J, Bongiovanni, D & List, M 2022, 'A systematic comparison of novel and existing differential analysis methods for CyTOF data', Briefings in Bioinformatics, vol. 23, no. 1, bbab471. https://doi.org/10.1093/bib/bbab471","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1657074","is_oa":false,"landing_page_url":"https://mediatum.ub.tum.de/1657074","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1728718","is_oa":false,"landing_page_url":"https://mediatum.ub.tum.de/1728718","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W604881960","https://openalex.org/W1490317255","https://openalex.org/W1525918485","https://openalex.org/W1991208598","https://openalex.org/W2004215629","https://openalex.org/W2030944466","https://openalex.org/W2037299692","https://openalex.org/W2048092465","https://openalex.org/W2080010451","https://openalex.org/W2110808396","https://openalex.org/W2121226941","https://openalex.org/W2125101937","https://openalex.org/W2143451223","https://openalex.org/W2143668817","https://openalex.org/W2146512944","https://openalex.org/W2158333823","https://openalex.org/W2618433578","https://openalex.org/W2764573087","https://openalex.org/W2797884775","https://openalex.org/W2799922543","https://openalex.org/W2810294993","https://openalex.org/W2897559540","https://openalex.org/W2922076850","https://openalex.org/W2930550104","https://openalex.org/W2945493637","https://openalex.org/W2950814274","https://openalex.org/W2952775948","https://openalex.org/W2988542621","https://openalex.org/W2990200213","https://openalex.org/W2991533411","https://openalex.org/W3100057034","https://openalex.org/W3118978773","https://openalex.org/W3120712761","https://openalex.org/W3125467042","https://openalex.org/W3129200898","https://openalex.org/W3138608760","https://openalex.org/W3164861786","https://openalex.org/W4231261941","https://openalex.org/W4300869678","https://openalex.org/W4399573565","https://openalex.org/W4399584589","https://openalex.org/W6766368297","https://openalex.org/W7071764571"],"related_works":["https://openalex.org/W2176701861","https://openalex.org/W4224000552","https://openalex.org/W2053129129","https://openalex.org/W4251194061","https://openalex.org/W2470680194","https://openalex.org/W2944792102","https://openalex.org/W1576959934","https://openalex.org/W4313381864","https://openalex.org/W2593722891","https://openalex.org/W2585179645"],"abstract_inverted_index":{"Cytometry":[0],"techniques":[1],"are":[2,102],"widely":[3],"used":[4],"to":[5,51,169],"discover":[6],"cellular":[7],"characteristics":[8],"at":[9,188],"single-cell":[10],"resolution.":[11],"Many":[12],"data":[13,18,49,101,109,172],"analysis":[14,35,79],"methods":[15,89,178],"for":[16,28,64,76],"cytometry":[17,171],"focus":[19],"solely":[20],"on":[21,80,133],"identifying":[22],"subpopulations":[23],"via":[24],"clustering":[25],"and":[26,73,82,96],"testing":[27],"differential":[29,33,77],"cell":[30],"abundance.":[31],"For":[32],"expression":[34,66,78,140],"of":[36],"markers":[37],"between":[38,139],"conditions,":[39],"only":[40],"few":[41],"tools":[42,45],"exist.":[43],"These":[44],"either":[46],"reduce":[47],"the":[48,100,135,167],"distribution":[50],"medians,":[52],"discarding":[53],"valuable":[54],"information,":[55],"or":[56,121],"have":[57],"underlying":[58],"assumptions":[59],"that":[60,88,142],"may":[61],"not":[62,103],"hold":[63],"all":[65,108],"patterns.":[67],"Here,":[68],"we":[69,152],"systematically":[70],"evaluated":[71],"existing":[72],"novel":[74],"approaches":[75],"real":[81],"simulated":[83],"CyTOF":[84],"data.":[85],"We":[86,126],"found":[87],"using":[90,107],"median":[91],"marker":[92],"expressions":[93],"compute":[94],"fast":[95],"reliable":[97],"results":[98],"when":[99],"strongly":[104,113],"zero-inflated.":[105],"Methods":[106],"detect":[110],"changes":[111],"in":[112],"zero-inflated":[114],"markers,":[115],"but":[116],"partially":[117],"suffer":[118],"from":[119,179],"overprediction":[120],"cannot":[122],"handle":[123,144],"big":[124],"datasets.":[125],"present":[127],"a":[128,161],"new":[129],"method,":[130],"CyEMD,":[131],"based":[132],"calculating":[134],"earth":[136],"mover's":[137],"distance":[138],"distributions":[141],"can":[143],"strong":[145],"zero-inflation":[146],"without":[147],"being":[148],"too":[149],"sensitive.":[150],"Additionally,":[151],"developed":[153],"CYANUS":[154],"-":[155,160],"CYtometry":[156],"ANalysis":[157],"Using":[158],"Shiny":[159,164],"user-friendly":[162],"R":[163],"App":[165],"allowing":[166],"user":[168],"analyze":[170],"with":[173],"state-of-the-art":[174],"tools,":[175],"including":[176],"well-performing":[177],"our":[180],"comparison.":[181],"A":[182],"public":[183],"web":[184],"interface":[185],"is":[186],"available":[187],"https://exbio.wzw.tum.de/cyanus/.":[189]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
