{"id":"https://openalex.org/W3213224786","doi":"https://doi.org/10.1093/bib/bbab454","title":"A roadmap for multi-omics data integration using deep learning","display_name":"A roadmap for multi-omics data integration using deep learning","publication_year":2021,"publication_date":"2021-10-07","ids":{"openalex":"https://openalex.org/W3213224786","doi":"https://doi.org/10.1093/bib/bbab454","mag":"3213224786","pmid":"https://pubmed.ncbi.nlm.nih.gov/34791014"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab454","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab454","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8769688","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058010272","display_name":"Mingon Kang","orcid":"https://orcid.org/0000-0002-9565-9523"},"institutions":[{"id":"https://openalex.org/I133999245","display_name":"University of Nevada, Las Vegas","ror":"https://ror.org/0406gha72","country_code":"US","type":"education","lineage":["https://openalex.org/I133999245"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mingon Kang","raw_affiliation_strings":["Department of Computer Science at the University of Nevada, Las Vegas, NV, USA"],"raw_orcid":"https://orcid.org/0000-0002-9565-9523","affiliations":[{"raw_affiliation_string":"Department of Computer Science at the University of Nevada, Las Vegas, NV, USA","institution_ids":["https://openalex.org/I133999245"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049891449","display_name":"Euiseong Ko","orcid":"https://orcid.org/0000-0002-8522-5334"},"institutions":[{"id":"https://openalex.org/I133999245","display_name":"University of Nevada, Las Vegas","ror":"https://ror.org/0406gha72","country_code":"US","type":"education","lineage":["https://openalex.org/I133999245"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Euiseong Ko","raw_affiliation_strings":["Department of Computer Science at the University of Nevada, Las Vegas, NV, USA"],"raw_orcid":"https://orcid.org/0000-0002-8522-5334","affiliations":[{"raw_affiliation_string":"Department of Computer Science at the University of Nevada, Las Vegas, NV, USA","institution_ids":["https://openalex.org/I133999245"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009024608","display_name":"Tesfaye B. Mersha","orcid":"https://orcid.org/0000-0002-9189-8447"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]},{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tesfaye B Mersha","raw_affiliation_strings":["Department of Pediatrics, Cincinnati Children\u2019s Hospital Medical Center, University of Cincinnati, Cincinnati, OH, USA"],"raw_orcid":"https://orcid.org/0000-0002-9189-8447","affiliations":[{"raw_affiliation_string":"Department of Pediatrics, Cincinnati Children\u2019s Hospital Medical Center, University of Cincinnati, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I1285204247","https://openalex.org/I63135867"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":15.3214,"has_fulltext":false,"cited_by_count":381,"citation_normalized_percentile":{"value":0.99571064,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.7784109115600586},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.720970869064331},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6382189393043518},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.562762975692749},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5208916664123535},{"id":"https://openalex.org/keywords/personalized-medicine","display_name":"Personalized medicine","score":0.4427981376647949},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.28521114587783813},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2629266381263733},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13102886080741882}],"concepts":[{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.7784109115600586},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.720970869064331},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6382189393043518},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.562762975692749},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5208916664123535},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.4427981376647949},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.28521114587783813},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2629266381263733},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13102886080741882},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbab454","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab454","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34791014","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34791014","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8769688","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8769688","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8769688","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8769688","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1349272604","display_name":null,"funder_award_id":"R01 HL132344","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"}],"funders":[{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":123,"referenced_works":["https://openalex.org/W1604681175","https://openalex.org/W1797697590","https://openalex.org/W1835690719","https://openalex.org/W1965328698","https://openalex.org/W1966278742","https://openalex.org/W1968524627","https://openalex.org/W1981849943","https://openalex.org/W1999146139","https://openalex.org/W2013377406","https://openalex.org/W2016504689","https://openalex.org/W2058198205","https://openalex.org/W2077350268","https://openalex.org/W2080234606","https://openalex.org/W2084501614","https://openalex.org/W2090705041","https://openalex.org/W2128733344","https://openalex.org/W2137255856","https://openalex.org/W2253609413","https://openalex.org/W2275300015","https://openalex.org/W2282821441","https://openalex.org/W2292966831","https://openalex.org/W2311607323","https://openalex.org/W2337125453","https://openalex.org/W2345512687","https://openalex.org/W2397757171","https://openalex.org/W2466119373","https://openalex.org/W2531479711","https://openalex.org/W2603590667","https://openalex.org/W2611463039","https://openalex.org/W2612690371","https://openalex.org/W2614393686","https://openalex.org/W2624701078","https://openalex.org/W2736515061","https://openalex.org/W2739892638","https://openalex.org/W2766997642","https://openalex.org/W2767953804","https://openalex.org/W2790845983","https://openalex.org/W2797883881","https://openalex.org/W2808845633","https://openalex.org/W2888484772","https://openalex.org/W2891816174","https://openalex.org/W2892587974","https://openalex.org/W2892911634","https://openalex.org/W2899604627","https://openalex.org/W2904997892","https://openalex.org/W2905330547","https://openalex.org/W2909194804","https://openalex.org/W2909364225","https://openalex.org/W2910705748","https://openalex.org/W2912411326","https://openalex.org/W2915583118","https://openalex.org/W2919115771","https://openalex.org/W2921144944","https://openalex.org/W2921485464","https://openalex.org/W2922701384","https://openalex.org/W2922815614","https://openalex.org/W2923142038","https://openalex.org/W2944869129","https://openalex.org/W2949419072","https://openalex.org/W2950878899","https://openalex.org/W2951209146","https://openalex.org/W2953321375","https://openalex.org/W2955502047","https://openalex.org/W2963517668","https://openalex.org/W2969342157","https://openalex.org/W2969476445","https://openalex.org/W2972977938","https://openalex.org/W2976952765","https://openalex.org/W2977669700","https://openalex.org/W2979665139","https://openalex.org/W2980325454","https://openalex.org/W2981177118","https://openalex.org/W2981690252","https://openalex.org/W2981960248","https://openalex.org/W2989634691","https://openalex.org/W2991151034","https://openalex.org/W2991920366","https://openalex.org/W2994706149","https://openalex.org/W2995560269","https://openalex.org/W2996061341","https://openalex.org/W2996092187","https://openalex.org/W2998556046","https://openalex.org/W2998882284","https://openalex.org/W3000659041","https://openalex.org/W3003192283","https://openalex.org/W3003269599","https://openalex.org/W3009535750","https://openalex.org/W3010739860","https://openalex.org/W3013844559","https://openalex.org/W3017019970","https://openalex.org/W3023060903","https://openalex.org/W3024899322","https://openalex.org/W3026207202","https://openalex.org/W3027067038","https://openalex.org/W3033814770","https://openalex.org/W3038260279","https://openalex.org/W3040723250","https://openalex.org/W3042346178","https://openalex.org/W3046305306","https://openalex.org/W3047538950","https://openalex.org/W3083699157","https://openalex.org/W3083985197","https://openalex.org/W3085172652","https://openalex.org/W3086347240","https://openalex.org/W3091439813","https://openalex.org/W3093258501","https://openalex.org/W3100788068","https://openalex.org/W3108347646","https://openalex.org/W3116143478","https://openalex.org/W3121875687","https://openalex.org/W3128180131","https://openalex.org/W3137675974","https://openalex.org/W3159151031","https://openalex.org/W3172931863","https://openalex.org/W3181637650","https://openalex.org/W3199618438","https://openalex.org/W4378071321","https://openalex.org/W6719832282","https://openalex.org/W6753978138","https://openalex.org/W6764245715","https://openalex.org/W6766846328","https://openalex.org/W6770854588","https://openalex.org/W6797492359"],"related_works":["https://openalex.org/W2042445733","https://openalex.org/W2278496144","https://openalex.org/W2924366642","https://openalex.org/W4392558563","https://openalex.org/W4280644300","https://openalex.org/W3173875945","https://openalex.org/W3159101980","https://openalex.org/W2966125521","https://openalex.org/W2126703991","https://openalex.org/W3003192283"],"abstract_inverted_index":{"High-throughput":[0],"next-generation":[1],"sequencing":[2],"now":[3],"makes":[4],"it":[5],"possible":[6],"to":[7,58,96,110,150],"generate":[8],"a":[9,26,86,108,132,141],"vast":[10],"amount":[11],"of":[12,30,37,48,64,134,153],"multi-omics":[13,54,74,91,135,156],"data":[14,19,55,75,106],"for":[15],"various":[16],"applications.":[17],"These":[18],"have":[20,45,107],"revolutionized":[21],"biomedical":[22,94],"research":[23,95],"by":[24],"providing":[25],"more":[27],"comprehensive":[28],"understanding":[29],"the":[31,49,81,99,145,151],"biological":[32],"systems":[33],"and":[34,62,67,72,115,121,123,139,148],"molecular":[35,103],"mechanisms":[36],"disease":[38],"development.":[39],"Recently,":[40],"deep":[41],"learning":[42],"(DL)":[43],"algorithms":[44],"become":[46],"one":[47],"most":[50],"promising":[51],"methods":[52],"in":[53,93,155],"analysis,":[56],"due":[57],"their":[59],"predictive":[60],"performance":[61],"capability":[63],"capturing":[65],"nonlinear":[66],"hierarchical":[68],"features.":[69],"While":[70],"integrating":[71],"translating":[73],"into":[76,144],"useful":[77],"functional":[78],"insights":[79],"remain":[80],"biggest":[82],"bottleneck,":[83],"there":[84],"is":[85],"clear":[87],"trend":[88],"towards":[89],"incorporating":[90],"analysis":[92],"help":[97],"explain":[98],"complex":[100],"relationships":[101],"between":[102],"layers.":[104],"Multi-omics":[105],"role":[109],"improve":[111],"prevention,":[112],"early":[113],"detection":[114],"prediction;":[116],"monitor":[117],"progression;":[118],"interpret":[119],"patterns":[120],"endotyping;":[122],"design":[124],"personalized":[125],"treatments.":[126],"In":[127],"this":[128],"review,":[129],"we":[130],"outline":[131],"roadmap":[133],"integration":[136],"using":[137],"DL":[138,154],"offer":[140],"practical":[142],"perspective":[143],"advantages,":[146],"challenges":[147],"barriers":[149],"implementation":[152],"data.":[157]},"counts_by_year":[{"year":2026,"cited_by_count":56},{"year":2025,"cited_by_count":121},{"year":2024,"cited_by_count":115},{"year":2023,"cited_by_count":62},{"year":2022,"cited_by_count":27}],"updated_date":"2026-07-18T07:39:51.176621","created_date":"2025-10-10T00:00:00"}
