{"id":"https://openalex.org/W3205135608","doi":"https://doi.org/10.1093/bib/bbab440","title":"Mining plant endogenous target mimics from miRNA\u2013lncRNA interactions based on dual-path parallel ensemble pruning method","display_name":"Mining plant endogenous target mimics from miRNA\u2013lncRNA interactions based on dual-path parallel ensemble pruning method","publication_year":2021,"publication_date":"2021-09-30","ids":{"openalex":"https://openalex.org/W3205135608","doi":"https://doi.org/10.1093/bib/bbab440","mag":"3205135608","pmid":"https://pubmed.ncbi.nlm.nih.gov/34662389"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab440","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab440","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051242607","display_name":"Qiang Kang","orcid":"https://orcid.org/0000-0001-6579-7944"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Kang","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning 116024, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008478540","display_name":"Jun Meng","orcid":"https://orcid.org/0000-0002-7357-8562"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jun Meng","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning 116024, China"],"raw_orcid":"https://orcid.org/0000-0002-7357-8562","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning 116024, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084719769","display_name":"Chenglin Su","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenglin Su","raw_affiliation_strings":["School of Bioengineering, Dalian University of Technology, Dalian, Liaoning, 116024 China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Bioengineering, Dalian University of Technology, Dalian, Liaoning, 116024 China","institution_ids":["https://openalex.org/I4210092944","https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102734160","display_name":"Yushi Luan","orcid":"https://orcid.org/0000-0001-9397-9171"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yushi Luan","raw_affiliation_strings":["School of Bioengineering, Dalian University of Technology, Dalian, Liaoning, 116024 China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Bioengineering, Dalian University of Technology, Dalian, Liaoning, 116024 China","institution_ids":["https://openalex.org/I4210092944","https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5008478540","https://openalex.org/A5102734160"],"corresponding_institution_ids":["https://openalex.org/I27357992","https://openalex.org/I4210092944"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.3259,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.78614073,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.668816864490509},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.661378026008606},{"id":"https://openalex.org/keywords/pruning","display_name":"Pruning","score":0.6392006874084473},{"id":"https://openalex.org/keywords/dual","display_name":"Dual (grammatical number)","score":0.5148550868034363},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5010349750518799},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.454680472612381},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33055347204208374},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2716951370239258},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1508708894252777}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.668816864490509},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.661378026008606},{"id":"https://openalex.org/C108010975","wikidata":"https://www.wikidata.org/wiki/Q500094","display_name":"Pruning","level":2,"score":0.6392006874084473},{"id":"https://openalex.org/C2780980858","wikidata":"https://www.wikidata.org/wiki/Q110022","display_name":"Dual (grammatical number)","level":2,"score":0.5148550868034363},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5010349750518799},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.454680472612381},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33055347204208374},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2716951370239258},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1508708894252777},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.0},{"id":"https://openalex.org/C124952713","wikidata":"https://www.wikidata.org/wiki/Q8242","display_name":"Literature","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab440","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab440","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34662389","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34662389","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6899999976158142,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G3962349799","display_name":null,"funder_award_id":"61872055","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5552543182","display_name":null,"funder_award_id":"32072592","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8649917763","display_name":null,"funder_award_id":"31872116","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W1952838455","https://openalex.org/W1988844742","https://openalex.org/W2006751864","https://openalex.org/W2099375330","https://openalex.org/W2100128988","https://openalex.org/W2103017472","https://openalex.org/W2128034264","https://openalex.org/W2159675211","https://openalex.org/W2175411040","https://openalex.org/W2212260088","https://openalex.org/W2224020790","https://openalex.org/W2298835798","https://openalex.org/W2321088503","https://openalex.org/W2577903052","https://openalex.org/W2593914038","https://openalex.org/W2604377165","https://openalex.org/W2609607459","https://openalex.org/W2610733803","https://openalex.org/W2618097618","https://openalex.org/W2761530751","https://openalex.org/W2772282300","https://openalex.org/W2791700952","https://openalex.org/W2792145175","https://openalex.org/W2800206218","https://openalex.org/W2807186140","https://openalex.org/W2808777650","https://openalex.org/W2811060007","https://openalex.org/W2898440040","https://openalex.org/W2899886793","https://openalex.org/W2912300458","https://openalex.org/W2913040039","https://openalex.org/W2914842084","https://openalex.org/W2941356353","https://openalex.org/W2947902519","https://openalex.org/W2974300506","https://openalex.org/W2979980119","https://openalex.org/W2991094260","https://openalex.org/W2994100438","https://openalex.org/W3005454931","https://openalex.org/W3011301811","https://openalex.org/W3012898475","https://openalex.org/W3089123840","https://openalex.org/W3091979363","https://openalex.org/W3094116963","https://openalex.org/W3095982413","https://openalex.org/W3118794840","https://openalex.org/W3131919059","https://openalex.org/W3133431009","https://openalex.org/W3158694006","https://openalex.org/W3159261411","https://openalex.org/W3171728281","https://openalex.org/W3179572443","https://openalex.org/W3185009863","https://openalex.org/W6732537500","https://openalex.org/W6788372093"],"related_works":["https://openalex.org/W2737319532","https://openalex.org/W2373300491","https://openalex.org/W3151405604","https://openalex.org/W1212596013","https://openalex.org/W2378744544","https://openalex.org/W2594301978","https://openalex.org/W2565797512","https://openalex.org/W2379704676","https://openalex.org/W4206442282","https://openalex.org/W2050308539"],"abstract_inverted_index":{"The":[0,100],"interactions":[1,70],"between":[2],"microRNAs":[3],"(miRNAs)":[4],"and":[5,50,116,137,160],"long":[6],"non-coding":[7],"RNAs":[8,33,104],"(lncRNAs)":[9],"play":[10],"important":[11],"roles":[12],"in":[13,157,173],"biological":[14,108,153],"activities.":[15],"Specially,":[16],"lncRNAs":[17],"as":[18],"endogenous":[19],"target":[20,31],"mimics":[21],"(eTMs)":[22],"can":[23],"bind":[24],"miRNAs":[25],"to":[26,85,110,155,171],"regulate":[27],"the":[28,44,76,87,112,117,131],"expressions":[29],"of":[30,38,53,89,103,119,146],"messenger":[32],"(mRNAs).":[34],"A":[35,144],"growing":[36],"number":[37],"studies":[39,45],"focus":[40],"on":[41,46,80,140],"animals,":[42],"but":[43],"plants":[47],"are":[48,56,95,105,122,150,164],"scarce":[49],"many":[51],"functions":[52,118],"plant":[54,68,142],"eTMs":[55,94,121,149,163],"unknown.":[57],"This":[58],"study":[59],"proposes":[60],"a":[61],"novel":[62],"ensemble":[63,83],"pruning":[64],"protocol":[65,133],"for":[66,179],"predicting":[67],"miRNA-lncRNA":[69],"at":[71],"first.":[72],"It":[73],"adaptively":[74],"prunes":[75],"base":[77],"models":[78],"based":[79],"dual-path":[81],"parallel":[82],"method":[84],"meet":[86],"challenge":[88],"cross-species":[90],"prediction.":[91],"Then":[92],"potential":[93,120,148,162],"mined":[96],"from":[97],"predicted":[98],"results.":[99],"expression":[101],"levels":[102],"identified":[106],"through":[107,124],"experiment":[109,154],"construct":[111],"lncRNA-miRNA-mRNA":[113],"regulatory":[114],"network,":[115],"inferred":[123,165],"enrichment":[125,169],"analysis.":[126],"Experiment":[127],"results":[128],"show":[129],"that":[130],"proposed":[132],"outperforms":[134],"existing":[135],"methods":[136],"state-of-the-art":[138],"predictors":[139],"various":[141],"species.":[143],"total":[145],"17":[147],"verified":[151],"by":[152,166],"involve":[156,172],"22":[158],"regulations,":[159],"14":[161],"Gene":[167],"Ontology":[168],"analysis":[170],"63":[174],"functions,":[175],"which":[176],"is":[177],"significant":[178],"further":[180],"research.":[181]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":6}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
