{"id":"https://openalex.org/W3207463050","doi":"https://doi.org/10.1093/bib/bbab415","title":"Development of interactive biological web applications with R/Shiny","display_name":"Development of interactive biological web applications with R/Shiny","publication_year":2021,"publication_date":"2021-09-13","ids":{"openalex":"https://openalex.org/W3207463050","doi":"https://doi.org/10.1093/bib/bbab415","mag":"3207463050","pmid":"https://pubmed.ncbi.nlm.nih.gov/34642739"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab415","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab415","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108050365","display_name":"Lihua Jia","orcid":"https://orcid.org/0000-0002-6972-8599"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lihua Jia","raw_affiliation_strings":["College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]},{"raw_affiliation_string":"National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015085832","display_name":"Wen Yao","orcid":"https://orcid.org/0000-0002-0643-506X"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wen Yao","raw_affiliation_strings":["College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":"https://orcid.org/0000-0002-0643-506X","affiliations":[{"raw_affiliation_string":"College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083826012","display_name":"Yingru Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingru Jiang","raw_affiliation_strings":["College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100776132","display_name":"Li Yang","orcid":"https://orcid.org/0000-0002-9360-4617"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Li","raw_affiliation_strings":["College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076279369","display_name":"Zhizhan Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhizhan Wang","raw_affiliation_strings":["College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100327736","display_name":"Haoran Li","orcid":"https://orcid.org/0000-0002-8935-212X"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoran Li","raw_affiliation_strings":["College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050089664","display_name":"Fangfang Huang","orcid":"https://orcid.org/0000-0001-5398-7978"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fangfang Huang","raw_affiliation_strings":["College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100326757","display_name":"Jiaming Li","orcid":"https://orcid.org/0000-0003-2051-9224"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiaming Li","raw_affiliation_strings":["College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100736287","display_name":"Tiantian Chen","orcid":"https://orcid.org/0000-0001-6090-099X"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tiantian Chen","raw_affiliation_strings":["College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101572566","display_name":"Huiyong Zhang","orcid":"https://orcid.org/0000-0002-0777-6034"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Huiyong Zhang","raw_affiliation_strings":["College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5015085832","https://openalex.org/A5101572566"],"corresponding_institution_ids":["https://openalex.org/I4750791"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":25.9409,"has_fulltext":false,"cited_by_count":85,"citation_normalized_percentile":{"value":0.99288295,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9805999994277954,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9768999814987183,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.8291174173355103},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7436728477478027},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6349709033966064},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.6050716042518616},{"id":"https://openalex.org/keywords/web-application-development","display_name":"Web application development","score":0.4706040322780609},{"id":"https://openalex.org/keywords/web-development","display_name":"Web development","score":0.46771377325057983},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.34231966733932495}],"concepts":[{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.8291174173355103},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7436728477478027},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6349709033966064},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.6050716042518616},{"id":"https://openalex.org/C120927855","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application development","level":4,"score":0.4706040322780609},{"id":"https://openalex.org/C79373723","wikidata":"https://www.wikidata.org/wiki/Q386275","display_name":"Web development","level":3,"score":0.46771377325057983},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.34231966733932495}],"mesh":[{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab415","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab415","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34642739","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34642739","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5699999928474426}],"awards":[{"id":"https://openalex.org/G272976730","display_name":null,"funder_award_id":"202102110015","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6178198122","display_name":null,"funder_award_id":"31900451","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":76,"referenced_works":["https://openalex.org/W906769828","https://openalex.org/W1810028515","https://openalex.org/W1842924979","https://openalex.org/W1973094248","https://openalex.org/W2035618305","https://openalex.org/W2055043387","https://openalex.org/W2073175998","https://openalex.org/W2075715210","https://openalex.org/W2103441770","https://openalex.org/W2107940314","https://openalex.org/W2108234281","https://openalex.org/W2114104545","https://openalex.org/W2122606427","https://openalex.org/W2124100711","https://openalex.org/W2131478115","https://openalex.org/W2138937646","https://openalex.org/W2151409320","https://openalex.org/W2158804744","https://openalex.org/W2179438025","https://openalex.org/W2184563578","https://openalex.org/W2268687088","https://openalex.org/W2341985741","https://openalex.org/W2513727910","https://openalex.org/W2540833380","https://openalex.org/W2582743722","https://openalex.org/W2586839881","https://openalex.org/W2769438273","https://openalex.org/W2807304153","https://openalex.org/W2903531437","https://openalex.org/W2921218152","https://openalex.org/W2947215881","https://openalex.org/W2951158909","https://openalex.org/W2952499863","https://openalex.org/W2983817879","https://openalex.org/W2989807288","https://openalex.org/W2990427812","https://openalex.org/W3000121346","https://openalex.org/W3000278514","https://openalex.org/W3070475142","https://openalex.org/W3083622068","https://openalex.org/W3087133081","https://openalex.org/W3088252238","https://openalex.org/W3092776600","https://openalex.org/W3106106305","https://openalex.org/W3109437984","https://openalex.org/W3119905834","https://openalex.org/W3128668246","https://openalex.org/W4233503865","https://openalex.org/W4237685485","https://openalex.org/W4242053123","https://openalex.org/W4243831978","https://openalex.org/W4399512748","https://openalex.org/W4399514140","https://openalex.org/W4399521566","https://openalex.org/W4399521722","https://openalex.org/W4399521831","https://openalex.org/W4399525366","https://openalex.org/W4399530507","https://openalex.org/W4399570601","https://openalex.org/W4399573430","https://openalex.org/W4399573964","https://openalex.org/W4399574249","https://openalex.org/W4399579401","https://openalex.org/W4399583378","https://openalex.org/W4399583379","https://openalex.org/W4399636032","https://openalex.org/W4399636352","https://openalex.org/W4399636700","https://openalex.org/W4399637897","https://openalex.org/W4399638148","https://openalex.org/W4399649500","https://openalex.org/W4399650979","https://openalex.org/W6635149568","https://openalex.org/W6728888212","https://openalex.org/W6733388370","https://openalex.org/W6782284188"],"related_works":["https://openalex.org/W2795601048","https://openalex.org/W2403324299","https://openalex.org/W2621177934","https://openalex.org/W4286287737","https://openalex.org/W1844100222","https://openalex.org/W3009852816","https://openalex.org/W2513223212","https://openalex.org/W2937805521","https://openalex.org/W2408031138","https://openalex.org/W4231519608"],"abstract_inverted_index":{"Development":[0],"of":[1,16,30,115,121,152,156],"interactive":[2,44],"web":[3,45,84,100,123,130],"applications":[4,46,85,101,124,131,158],"to":[5,82,108,137,146],"deposit,":[6],"visualize":[7],"and":[8,40,73,93,150,162],"analyze":[9],"biological":[10,37,99,122,129],"datasets":[11],"is":[12,19,27],"a":[13,20,48],"major":[14],"subject":[15],"bioinformatics.":[17,41],"R":[18,52,68,89,144],"programming":[21],"language":[22],"for":[23,51,86,94,165],"data":[24,38],"science,":[25],"which":[26],"also":[28],"one":[29],"the":[31,55,61,87,113,119,148,160],"most":[32],"popular":[33],"languages":[34],"used":[35,143],"in":[36,64,91,159],"analysis":[39],"However,":[42],"building":[43],"was":[47,58],"great":[49],"challenge":[50],"users":[53],"before":[54],"Shiny":[56,76],"package":[57],"developed":[59,104],"by":[60],"RStudio":[62],"company":[63],"2012.":[65],"By":[66],"compiling":[67],"code":[69],"into":[70],"HTML,":[71],"CSS":[72],"JavaScript":[74],"code,":[75],"has":[77],"made":[78],"it":[79],"incredibly":[80],"easy":[81],"build":[83,138,147],"large":[88],"community":[90],"bioinformatics":[92],"even":[95],"non-programmers.":[96],"Over":[97],"470":[98],"have":[102],"been":[103],"with":[105,125,133],"R/Shiny":[106,140,153,157],"up":[107],"now.":[109],"To":[110],"further":[111],"promote":[112],"utilization":[114],"R/Shiny,":[116,126,134],"we":[117],"reviewed":[118],"development":[120],"including":[127],"eminent":[128],"built":[132],"basic":[135],"steps":[136],"an":[139],"application,":[141],"commonly":[142],"packages":[145],"interface":[149],"server":[151],"applications,":[154],"deployment":[155],"cloud":[161],"online":[163],"resources":[164],"R/Shiny.":[166]},"counts_by_year":[{"year":2026,"cited_by_count":15},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-16T13:24:37.021932","created_date":"2025-10-10T00:00:00"}
