{"id":"https://openalex.org/W3202551657","doi":"https://doi.org/10.1093/bib/bbab407","title":"Heterogeneous graph attention network based on meta-paths for lncRNA\u2013disease association prediction","display_name":"Heterogeneous graph attention network based on meta-paths for lncRNA\u2013disease association prediction","publication_year":2021,"publication_date":"2021-09-08","ids":{"openalex":"https://openalex.org/W3202551657","doi":"https://doi.org/10.1093/bib/bbab407","mag":"3202551657","pmid":"https://pubmed.ncbi.nlm.nih.gov/34585231"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab407","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab407","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090393044","display_name":"Xiaosa Zhao","orcid":"https://orcid.org/0000-0003-3510-6473"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaosa Zhao","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University, Changchun 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Changchun 130117, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Xiaosa Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaosa Zhao","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University, Changchun 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Changchun 130117, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101401076","display_name":"Xiaowei Zhao","orcid":"https://orcid.org/0000-0002-9868-5102"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaowei Zhao","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University, Changchun 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Changchun 130117, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101401076","display_name":"Xiaowei Zhao","orcid":"https://orcid.org/0000-0002-9868-5102"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaowei Zhao","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University, Changchun 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Changchun 130117, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023555343","display_name":"Minghao Yin","orcid":"https://orcid.org/0000-0002-6226-2394"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Minghao Yin","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University, Changchun 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Changchun 130117, China","institution_ids":["https://openalex.org/I184983240"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5023555343","https://openalex.org/A5101401076"],"corresponding_institution_ids":["https://openalex.org/I184983240"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":4.372,"has_fulltext":false,"cited_by_count":66,"citation_normalized_percentile":{"value":0.96341866,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9172999858856201,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9172999858856201,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.008899999782443047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.00860000029206276,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6852868795394897},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.5298939347267151},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.529017448425293},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32515573501586914},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.18169429898262024},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.10273668169975281}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6852868795394897},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.5298939347267151},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.529017448425293},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32515573501586914},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.18169429898262024},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.10273668169975281},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab407","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab407","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34585231","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34585231","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2147507192","display_name":"\u9ad8\u7ef4SMT\u516c\u5f0f\u7684\u6c42\u89e3\u4e0e\u89e3\u7a7a\u95f4\u5927\u5c0f\u8ba1\u7b97","funder_award_id":"61972384","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5327151618","display_name":null,"funder_award_id":"61976050","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G562891027","display_name":null,"funder_award_id":"2412019FZ048","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8088912209","display_name":null,"funder_award_id":"2412019FZ047","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8860909251","display_name":null,"funder_award_id":"2412018QD022","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":120,"referenced_works":["https://openalex.org/W622497121","https://openalex.org/W1507361162","https://openalex.org/W1522301498","https://openalex.org/W1757407923","https://openalex.org/W1966716734","https://openalex.org/W1974350437","https://openalex.org/W1975847255","https://openalex.org/W1981820702","https://openalex.org/W1999283025","https://openalex.org/W2000833392","https://openalex.org/W2007015770","https://openalex.org/W2013900075","https://openalex.org/W2039816251","https://openalex.org/W2057094700","https://openalex.org/W2067410483","https://openalex.org/W2071271349","https://openalex.org/W2071590480","https://openalex.org/W2087351768","https://openalex.org/W2100967414","https://openalex.org/W2105362408","https://openalex.org/W2105445723","https://openalex.org/W2106029302","https://openalex.org/W2115464628","https://openalex.org/W2130313087","https://openalex.org/W2130543801","https://openalex.org/W2139393465","https://openalex.org/W2141222510","https://openalex.org/W2141831115","https://openalex.org/W2143129697","https://openalex.org/W2146863542","https://openalex.org/W2149067299","https://openalex.org/W2150780222","https://openalex.org/W2152970345","https://openalex.org/W2158920969","https://openalex.org/W2164252048","https://openalex.org/W2199784525","https://openalex.org/W2205277042","https://openalex.org/W2249497461","https://openalex.org/W2280631190","https://openalex.org/W2299025755","https://openalex.org/W2314065766","https://openalex.org/W2345769277","https://openalex.org/W2507628504","https://openalex.org/W2509517930","https://openalex.org/W2531500048","https://openalex.org/W2561297934","https://openalex.org/W2565893173","https://openalex.org/W2566575894","https://openalex.org/W2571471366","https://openalex.org/W2578321666","https://openalex.org/W2587859961","https://openalex.org/W2590417095","https://openalex.org/W2591268383","https://openalex.org/W2605001769","https://openalex.org/W2605768453","https://openalex.org/W2611747160","https://openalex.org/W2616792229","https://openalex.org/W2626587929","https://openalex.org/W2630915474","https://openalex.org/W2763023272","https://openalex.org/W2772618228","https://openalex.org/W2793843648","https://openalex.org/W2801501532","https://openalex.org/W2803752613","https://openalex.org/W2805805940","https://openalex.org/W2808239630","https://openalex.org/W2881172925","https://openalex.org/W2888800941","https://openalex.org/W2893777382","https://openalex.org/W2895679848","https://openalex.org/W2901870954","https://openalex.org/W2911286998","https://openalex.org/W2916950683","https://openalex.org/W2918193787","https://openalex.org/W2918936289","https://openalex.org/W2940644952","https://openalex.org/W2946431514","https://openalex.org/W2947281209","https://openalex.org/W2948848957","https://openalex.org/W2950777612","https://openalex.org/W2952153265","https://openalex.org/W2961565435","https://openalex.org/W2964015378","https://openalex.org/W2966026169","https://openalex.org/W2966564411","https://openalex.org/W2971447153","https://openalex.org/W2987254064","https://openalex.org/W3000082418","https://openalex.org/W3000503908","https://openalex.org/W3009439390","https://openalex.org/W3012774707","https://openalex.org/W3014793605","https://openalex.org/W3025984683","https://openalex.org/W3039075121","https://openalex.org/W3045879648","https://openalex.org/W3080555959","https://openalex.org/W3081960698","https://openalex.org/W3093030756","https://openalex.org/W3099929518","https://openalex.org/W3100993589","https://openalex.org/W3119357010","https://openalex.org/W3120280121","https://openalex.org/W3127251420","https://openalex.org/W3145754360","https://openalex.org/W3185225911","https://openalex.org/W4297733535","https://openalex.org/W6631190155","https://openalex.org/W6680919041","https://openalex.org/W6724864747","https://openalex.org/W6726873649","https://openalex.org/W6732116548","https://openalex.org/W6736478510","https://openalex.org/W6750079680","https://openalex.org/W6766633097","https://openalex.org/W6773297347","https://openalex.org/W6774133412","https://openalex.org/W6781932242","https://openalex.org/W6783080211","https://openalex.org/W6784088628","https://openalex.org/W6798719138"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"MOTIVATION:":[0],"Discovering":[1],"long":[2],"noncoding":[3],"RNA":[4],"(lncRNA)-disease":[5],"associations":[6,24,110,222],"is":[7,43,95,217],"a":[8,21,37,121,142],"fundamental":[9],"and":[10,17,32,47,62,92,113,148,153,168,183,199,225],"critical":[11],"part":[12],"in":[13,64,84,107,243],"understanding":[14],"disease":[15,149],"etiology":[16],"pathogenesis.":[18],"However,":[19,78],"only":[20],"few":[22],"lncRNA-disease":[23,53,133,154,214,244],"have":[25,69],"been":[26,70],"identified":[27],"because":[28],"of":[29,44,58,81,180,254],"the":[30,56,79,160,234,239,252],"time-consuming":[31],"expensive":[33],"biological":[34],"experiments.":[35],"As":[36],"result,":[38],"an":[39],"efficient":[40],"computational":[41],"method":[42],"great":[45],"importance":[46],"urgently":[48],"needed":[49],"for":[50,131,159,219],"identifying":[51],"potential":[52],"associations.":[54],"With":[55],"ability":[57],"exploiting":[59],"node":[60,87,176],"features":[61],"relationships":[63],"network,":[65],"graph-based":[66],"learning":[67],"models":[68],"commonly":[71,240],"utilized":[72],"by":[73,145],"these":[74,82,181],"biomolecular":[75],"association":[76,245],"predictions.":[77],"capability":[80],"methods":[83],"comprehensively":[85],"fusing":[86],"features,":[88],"heterogeneous":[89,123,143,161,184],"topological":[90,155],"structures":[91],"semantic":[93,202],"information":[94],"distant":[96],"from":[97,178],"optimal":[98],"or":[99],"even":[100],"satisfactory.":[101],"Moreover,":[102,227],"there":[103],"are":[104],"still":[105],"limitations":[106],"modeling":[108],"complex":[109],"between":[111,223],"lncRNAs":[112,224],"diseases.":[114,226],"RESULTS:":[115],"In":[116,204],"this":[117],"paper,":[118],"we":[119,140,163,187,206,228],"develop":[120],"novel":[122],"graph":[124,171],"attention":[125,172,189],"network":[126,144,173,232],"framework":[127],"based":[128],"on":[129],"meta-paths":[130],"predicting":[132],"associations,":[134,215],"denoted":[135],"as":[136],"HGATLDA.":[137],"At":[138],"first,":[139],"conduct":[141,164],"incorporating":[146],"lncRNA":[147],"feature":[150],"structural":[151,156],"graphs,":[152],"graph.":[157],"Then,":[158],"graph,":[162],"multiple":[165,196],"metapath-based":[166,197],"subgraphs":[167,198],"then":[169],"utilize":[170],"to":[174,191,195,212,237],"learn":[175],"embeddings":[177],"neighbors":[179],"homogeneous":[182],"subgraphs.":[185],"Next,":[186],"implement":[188],"mechanism":[190],"adaptively":[192],"assign":[193],"weights":[194],"get":[200],"more":[201],"information.":[203],"addition,":[205],"combine":[207],"neural":[208,231],"inductive":[209],"matrix":[210],"completion":[211],"reconstruct":[213],"which":[216],"applied":[218],"capturing":[220],"complicated":[221],"incorporate":[229],"cost-sensitive":[230],"into":[233],"loss":[235],"function":[236],"tackle":[238],"imbalance":[241],"problem":[242],"prediction.":[246],"Finally,":[247],"extensive":[248],"experimental":[249],"results":[250],"demonstrate":[251],"effectiveness":[253],"our":[255],"proposed":[256],"framework.":[257]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":20},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":12}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
