{"id":"https://openalex.org/W3204035978","doi":"https://doi.org/10.1093/bib/bbab381","title":"A comprehensive review of online resources for microRNA\u2013diseases associations: the state of the art","display_name":"A comprehensive review of online resources for microRNA\u2013diseases associations: the state of the art","publication_year":2021,"publication_date":"2021-09-14","ids":{"openalex":"https://openalex.org/W3204035978","doi":"https://doi.org/10.1093/bib/bbab381","mag":"3204035978","pmid":"https://pubmed.ncbi.nlm.nih.gov/34571538"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab381","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab381","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062097116","display_name":"Maryam Mahjoubin\u2010Tehran","orcid":"https://orcid.org/0000-0001-5719-5345"},"institutions":[{"id":"https://openalex.org/I165560825","display_name":"Mashhad University of Medical Sciences","ror":"https://ror.org/04sfka033","country_code":"IR","type":"education","lineage":["https://openalex.org/I165560825"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Maryam Mahjoubin-Tehran","raw_affiliation_strings":["Bioinformatics Research Group, Mashhad University of Medical Sciences, Mashhad, Iran and Department of Medical Biotechnology and Nanotechnology, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group, Mashhad University of Medical Sciences, Mashhad, Iran and Department of Medical Biotechnology and Nanotechnology, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran","institution_ids":["https://openalex.org/I165560825"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025778796","display_name":"Samaneh Rezaei","orcid":"https://orcid.org/0000-0001-5579-6016"},"institutions":[{"id":"https://openalex.org/I165560825","display_name":"Mashhad University of Medical Sciences","ror":"https://ror.org/04sfka033","country_code":"IR","type":"education","lineage":["https://openalex.org/I165560825"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Samaneh Rezaei","raw_affiliation_strings":["Bioinformatics Research Group, Mashhad University of Medical Sciences, Mashhad, Iran and Department of Medical Biotechnology and Nanotechnology, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group, Mashhad University of Medical Sciences, Mashhad, Iran and Department of Medical Biotechnology and Nanotechnology, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran","institution_ids":["https://openalex.org/I165560825"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056983574","display_name":"Amin Jalili","orcid":"https://orcid.org/0000-0002-9100-0932"},"institutions":[{"id":"https://openalex.org/I165560825","display_name":"Mashhad University of Medical Sciences","ror":"https://ror.org/04sfka033","country_code":"IR","type":"education","lineage":["https://openalex.org/I165560825"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Amin Jalili","raw_affiliation_strings":["Bioinformatics Research Group, Mashhad University of Medical Sciences, Mashhad, Iran and Department of Medical Biotechnology and Nanotechnology, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group, Mashhad University of Medical Sciences, Mashhad, Iran and Department of Medical Biotechnology and Nanotechnology, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran","institution_ids":["https://openalex.org/I165560825"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036163332","display_name":"Amirhossein Sahebkar","orcid":"https://orcid.org/0000-0002-8656-1444"},"institutions":[{"id":"https://openalex.org/I165560825","display_name":"Mashhad University of Medical Sciences","ror":"https://ror.org/04sfka033","country_code":"IR","type":"education","lineage":["https://openalex.org/I165560825"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Amirhossein Sahebkar","raw_affiliation_strings":["Bioinformatics Research Group, Mashhad University of Medical Sciences, Mashhad, Iran and Department of Medical Biotechnology and Nanotechnology, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Group, Mashhad University of Medical Sciences, Mashhad, Iran and Department of Medical Biotechnology and Nanotechnology, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran","institution_ids":["https://openalex.org/I165560825"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044546733","display_name":"Seyed Hamid Aghaee\u2010Bakhtiari","orcid":"https://orcid.org/0000-0002-6093-7837"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Seyed Hamid Aghaee-Bakhtiari","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5044546733"],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.782,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.6604275,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7387019991874695},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.6247069835662842},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5955148339271545},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5144267678260803},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40401503443717957},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3902057707309723},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3358939588069916},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3179389238357544},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2316155731678009},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21422308683395386},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11477455496788025}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7387019991874695},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.6247069835662842},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5955148339271545},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5144267678260803},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40401503443717957},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3902057707309723},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3358939588069916},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3179389238357544},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2316155731678009},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21422308683395386},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11477455496788025},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab381","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab381","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34571538","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34571538","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1324535891","display_name":null,"funder_award_id":"941302","funder_id":"https://openalex.org/F4320322855","funder_display_name":"Mashhad University of Medical Sciences"},{"id":"https://openalex.org/G5415417150","display_name":null,"funder_award_id":"941849","funder_id":"https://openalex.org/F4320322855","funder_display_name":"Mashhad University of Medical Sciences"},{"id":"https://openalex.org/G6736102379","display_name":null,"funder_award_id":"961465","funder_id":"https://openalex.org/F4320322855","funder_display_name":"Mashhad University of Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320322855","display_name":"Mashhad University of Medical Sciences","ror":"https://ror.org/04sfka033"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":69,"referenced_works":["https://openalex.org/W78773657","https://openalex.org/W1587266177","https://openalex.org/W1853190468","https://openalex.org/W1966832659","https://openalex.org/W1972898510","https://openalex.org/W1979033523","https://openalex.org/W1987071519","https://openalex.org/W1999307837","https://openalex.org/W2006079840","https://openalex.org/W2008289103","https://openalex.org/W2017199818","https://openalex.org/W2023893507","https://openalex.org/W2035459770","https://openalex.org/W2044832480","https://openalex.org/W2050869737","https://openalex.org/W2058809590","https://openalex.org/W2059584025","https://openalex.org/W2070571588","https://openalex.org/W2078998711","https://openalex.org/W2081150348","https://openalex.org/W2088377669","https://openalex.org/W2103151642","https://openalex.org/W2108317100","https://openalex.org/W2112012611","https://openalex.org/W2128768066","https://openalex.org/W2150863711","https://openalex.org/W2152091242","https://openalex.org/W2153210075","https://openalex.org/W2154085311","https://openalex.org/W2154793065","https://openalex.org/W2158135353","https://openalex.org/W2159857693","https://openalex.org/W2163199119","https://openalex.org/W2261997464","https://openalex.org/W2291585198","https://openalex.org/W2320277087","https://openalex.org/W2338941824","https://openalex.org/W2345396952","https://openalex.org/W2564794519","https://openalex.org/W2590330699","https://openalex.org/W2609826536","https://openalex.org/W2614101542","https://openalex.org/W2750021155","https://openalex.org/W2765950793","https://openalex.org/W2811212358","https://openalex.org/W2883890257","https://openalex.org/W2893915868","https://openalex.org/W2909944362","https://openalex.org/W2913847005","https://openalex.org/W2931711728","https://openalex.org/W2937497541","https://openalex.org/W2937936490","https://openalex.org/W2939058190","https://openalex.org/W2939466283","https://openalex.org/W2941728488","https://openalex.org/W2963051673","https://openalex.org/W2979903231","https://openalex.org/W2980345122","https://openalex.org/W2989832464","https://openalex.org/W2995187768","https://openalex.org/W3008353800","https://openalex.org/W3033001818","https://openalex.org/W3043032183","https://openalex.org/W3086028255","https://openalex.org/W3092802143","https://openalex.org/W4254410097","https://openalex.org/W6639118041","https://openalex.org/W6705243302","https://openalex.org/W6731316468"],"related_works":["https://openalex.org/W2737319532","https://openalex.org/W3151405604","https://openalex.org/W2050308539","https://openalex.org/W2565797512","https://openalex.org/W2793648706","https://openalex.org/W2019096591","https://openalex.org/W3032012916","https://openalex.org/W2057742104","https://openalex.org/W4283692078","https://openalex.org/W2025542119"],"abstract_inverted_index":{"MicroRNAs":[0],"(miRNAs)":[1],"as":[2,25,27,53,62,77,108,193,216,228],"small":[3],"19-":[4],"to":[5,148,255],"24-nucleotide":[6],"noncoding":[7],"RNAs":[8],"regulate":[9],"several":[10],"mRNA":[11],"targets":[12],"and":[13,39,66,97,104,117,152,197,201,227,235,259],"signaling":[14,115],"pathways.":[15],"Therefore,":[16],"miRNAs":[17,51,87,151,172,258],"are":[18,188],"considered":[19],"key":[20],"regulators":[21],"in":[22,34,69,88,101,114,120,130,168,184,208],"cellular":[23],"pathways":[24,116],"well":[26],"various":[28,121],"pathologies.":[29],"There":[30],"is":[31,90],"substantial":[32],"interest":[33],"the":[35,46,70,83,136,177,233,238],"relationship":[36],"between":[37],"disease":[38,89,170,254],"miRNAs,":[40,164],"which":[41,169],"made":[42],"that":[43,154,180,204,250,261],"one":[44],"of":[45,72,85,237],"important":[47],"research":[48],"topics.":[49],"Interestingly,":[50],"emerged":[52],"an":[54,102],"attractive":[55],"approach":[56],"for":[57,64,155,220,231,262,273],"clinical":[58,156,263],"application,":[59],"not":[60,194,198],"only":[61],"biomarkers":[63],"diagnosis":[65],"prognosis":[67],"or":[68,138,242],"prediction":[71],"therapy":[73],"response":[74],"but":[75],"also":[76],"therapeutic":[78],"tools.":[79],"For":[80],"these":[81,142,171,185],"purposes,":[82],"identification":[84],"crucial":[86],"very":[91],"important.":[92],"Databases":[93],"provided":[94],"valuable":[95],"experimental":[96],"computational":[98],"miRNAs-disease":[99,128,248],"information":[100,203],"accessible":[103],"comprehensive":[105,218],"manner,":[106],"such":[107,192],"miRNA":[109,112,118],"target":[110],"genes,":[111],"related":[113],"involvement":[119],"diseases.":[122,140],"In":[123,141,158],"this":[124],"review,":[125],"we":[126],"summarized":[127,247],"databases":[129,249],"two":[131],"main":[132],"categories":[133],"based":[134],"on":[135],"general":[137],"specific":[139],"databases,":[143,186],"researchers":[144,226,251],"could":[145,166,252],"search":[146,253],"diseases":[147],"identify":[149,256],"critical":[150,257],"developed":[153,260],"applications.":[157,264],"another":[159],"way,":[160],"by":[161,225,240],"searching":[162],"particular":[163],"they":[165],"recognize":[167],"would":[173],"be":[174,206,214],"dysregulated.":[175],"Despite":[176],"significant":[178],"development":[179],"has":[181],"been":[182],"done":[183],"there":[187],"still":[189],"some":[190],"limitations,":[191],"being":[195],"updated":[196],"providing":[199],"uniform":[200],"detailed":[202],"should":[205],"resolved":[207],"future":[209],"databases.":[210],"This":[211,265],"survey":[212,266],"can":[213,267],"helpful":[215],"a":[217,222,229,270],"reference":[219],"choosing":[221],"suitable":[223,271],"database":[224,239,272],"guideline":[230],"comparing":[232],"features":[234],"limitations":[236],"developer":[241],"designer.":[243],"Short":[244],"abstract":[245],"We":[246],"help":[268],"choose":[269],"researchers.":[274]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
