{"id":"https://openalex.org/W3197442769","doi":"https://doi.org/10.1093/bib/bbab362","title":"ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data","display_name":"ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data","publication_year":2021,"publication_date":"2021-08-17","ids":{"openalex":"https://openalex.org/W3197442769","doi":"https://doi.org/10.1093/bib/bbab362","mag":"3197442769","pmid":"https://pubmed.ncbi.nlm.nih.gov/34472588"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab362","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab362","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100761365","display_name":"Wei Zhang","orcid":"https://orcid.org/0000-0003-4264-5758"},"institutions":[{"id":"https://openalex.org/I4210101231","display_name":"Institut de Biologie syst\u00e9mique et synth\u00e9tique","ror":"https://ror.org/018r7pa17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210101231","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","FR"],"is_corresponding":false,"raw_author_name":"Wei Zhang","raw_affiliation_strings":["Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","Ministry of Education Key Laboratory of Bioinformatics","Center for Synthetic and Systems Biology","Department of Automation, Tsinghua University, Beijing 100084, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics","institution_ids":[]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology","institution_ids":["https://openalex.org/I4210101231"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069634574","display_name":"Hanwen Xu","orcid":"https://orcid.org/0000-0003-4865-7071"},"institutions":[{"id":"https://openalex.org/I4210101231","display_name":"Institut de Biologie syst\u00e9mique et synth\u00e9tique","ror":"https://ror.org/018r7pa17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210101231","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","FR"],"is_corresponding":false,"raw_author_name":"Hanwen Xu","raw_affiliation_strings":["Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","Department of Automation, Tsinghua University, Beijing 100084, China","Center for Synthetic and Systems Biology","Ministry of Education Key Laboratory of Bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology","institution_ids":["https://openalex.org/I4210101231"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069072350","display_name":"Rong Qiao","orcid":"https://orcid.org/0009-0001-3668-0162"},"institutions":[{"id":"https://openalex.org/I4210101231","display_name":"Institut de Biologie syst\u00e9mique et synth\u00e9tique","ror":"https://ror.org/018r7pa17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210101231","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","FR"],"is_corresponding":false,"raw_author_name":"Rong Qiao","raw_affiliation_strings":["Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","Ministry of Education Key Laboratory of Bioinformatics","Department of Automation, Tsinghua University, Beijing 100084, China","Center for Synthetic and Systems Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics","institution_ids":[]},{"raw_affiliation_string":"Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology","institution_ids":["https://openalex.org/I4210101231"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075289664","display_name":"Bixi Zhong","orcid":null},"institutions":[{"id":"https://openalex.org/I4210101231","display_name":"Institut de Biologie syst\u00e9mique et synth\u00e9tique","ror":"https://ror.org/018r7pa17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210101231","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","FR"],"is_corresponding":false,"raw_author_name":"Bixi Zhong","raw_affiliation_strings":["Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","Department of Automation, Tsinghua University, Beijing 100084, China","Ministry of Education Key Laboratory of Bioinformatics","Center for Synthetic and Systems Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics","institution_ids":[]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology","institution_ids":["https://openalex.org/I4210101231"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101527018","display_name":"Xianglin Zhang","orcid":"https://orcid.org/0000-0002-8585-1917"},"institutions":[{"id":"https://openalex.org/I4210101231","display_name":"Institut de Biologie syst\u00e9mique et synth\u00e9tique","ror":"https://ror.org/018r7pa17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210101231","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","FR"],"is_corresponding":false,"raw_author_name":"Xianglin Zhang","raw_affiliation_strings":["Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","Department of Automation, Tsinghua University, Beijing 100084, China","Center for Synthetic and Systems Biology","Ministry of Education Key Laboratory of Bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology","institution_ids":["https://openalex.org/I4210101231"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012871103","display_name":"Jin Gu","orcid":"https://orcid.org/0000-0003-3968-8036"},"institutions":[{"id":"https://openalex.org/I4210101231","display_name":"Institut de Biologie syst\u00e9mique et synth\u00e9tique","ror":"https://ror.org/018r7pa17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210101231","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","FR"],"is_corresponding":false,"raw_author_name":"Jin Gu","raw_affiliation_strings":["Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","Center for Synthetic and Systems Biology","Department of Automation, Tsinghua University, Beijing 100084, China","Ministry of Education Key Laboratory of Bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology","institution_ids":["https://openalex.org/I4210101231"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081242795","display_name":"Xuegong Zhang","orcid":"https://orcid.org/0000-0002-9684-5643"},"institutions":[{"id":"https://openalex.org/I4210101231","display_name":"Institut de Biologie syst\u00e9mique et synth\u00e9tique","ror":"https://ror.org/018r7pa17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210101231","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","FR"],"is_corresponding":false,"raw_author_name":"Xuegong Zhang","raw_affiliation_strings":["Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","Ministry of Education Key Laboratory of Bioinformatics","Department of Automation, Tsinghua University, Beijing 100084, China","Center for Synthetic and Systems Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics","institution_ids":[]},{"raw_affiliation_string":"Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology","institution_ids":["https://openalex.org/I4210101231"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100634707","display_name":"Lei Wei","orcid":"https://orcid.org/0000-0002-1546-6458"},"institutions":[{"id":"https://openalex.org/I4210101231","display_name":"Institut de Biologie syst\u00e9mique et synth\u00e9tique","ror":"https://ror.org/018r7pa17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210101231","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","FR"],"is_corresponding":true,"raw_author_name":"Lei Wei","raw_affiliation_strings":["Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","Department of Automation, Tsinghua University, Beijing 100084, China","Center for Synthetic and Systems Biology","Ministry of Education Key Laboratory of Bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology","institution_ids":["https://openalex.org/I4210101231"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008093795","display_name":"Xiaowo Wang","orcid":"https://orcid.org/0000-0003-2965-8036"},"institutions":[{"id":"https://openalex.org/I4210101231","display_name":"Institut de Biologie syst\u00e9mique et synth\u00e9tique","ror":"https://ror.org/018r7pa17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210101231","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","FR"],"is_corresponding":true,"raw_author_name":"Xiaowo Wang","raw_affiliation_strings":["Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","Department of Automation, Tsinghua University, Beijing 100084, China","Ministry of Education Key Laboratory of Bioinformatics","Center for Synthetic and Systems Biology"],"raw_orcid":"https://orcid.org/0000-0003-2965-8036","affiliations":[{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics; Center for Synthetic and Systems Biology; Bioinformatics Division, Beijing National Research Center for Information Science and Technology; Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University, Beijing 100084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Ministry of Education Key Laboratory of Bioinformatics","institution_ids":[]},{"raw_affiliation_string":"Center for Synthetic and Systems Biology","institution_ids":["https://openalex.org/I4210101231"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5008093795","https://openalex.org/A5100634707"],"corresponding_institution_ids":["https://openalex.org/I4210101231","https://openalex.org/I99065089"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.2249,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.76674566,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10136","display_name":"Statistical Methods and Inference","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9786999821662903,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/outlier","display_name":"Outlier","score":0.6288660168647766},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.48945438861846924},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4521791934967041},{"id":"https://openalex.org/keywords/deconvolution","display_name":"Deconvolution","score":0.43783265352249146},{"id":"https://openalex.org/keywords/regression","display_name":"Regression","score":0.4244043231010437},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4221137762069702},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.404799222946167},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3872109651565552},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.359317421913147},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.35869675874710083},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3546410799026489},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.34594419598579407},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.29529738426208496},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25181081891059875},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18974637985229492}],"concepts":[{"id":"https://openalex.org/C79337645","wikidata":"https://www.wikidata.org/wiki/Q779824","display_name":"Outlier","level":2,"score":0.6288660168647766},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.48945438861846924},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4521791934967041},{"id":"https://openalex.org/C174576160","wikidata":"https://www.wikidata.org/wiki/Q1183700","display_name":"Deconvolution","level":2,"score":0.43783265352249146},{"id":"https://openalex.org/C83546350","wikidata":"https://www.wikidata.org/wiki/Q1139051","display_name":"Regression","level":2,"score":0.4244043231010437},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4221137762069702},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.404799222946167},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3872109651565552},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.359317421913147},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.35869675874710083},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3546410799026489},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.34594419598579407},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.29529738426208496},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25181081891059875},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18974637985229492}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab362","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab362","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34472588","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34472588","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.5699999928474426,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G5808002254","display_name":null,"funder_award_id":"61773230","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5814160623","display_name":null,"funder_award_id":"61721003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":75,"referenced_works":["https://openalex.org/W1107917109","https://openalex.org/W1488647627","https://openalex.org/W1963853602","https://openalex.org/W1972545755","https://openalex.org/W1985987855","https://openalex.org/W1986241711","https://openalex.org/W1995086037","https://openalex.org/W2020541351","https://openalex.org/W2029033394","https://openalex.org/W2049491375","https://openalex.org/W2068629997","https://openalex.org/W2100977485","https://openalex.org/W2103081012","https://openalex.org/W2104603094","https://openalex.org/W2115076892","https://openalex.org/W2142300779","https://openalex.org/W2148241659","https://openalex.org/W2155388222","https://openalex.org/W2158549544","https://openalex.org/W2259938310","https://openalex.org/W2293298207","https://openalex.org/W2299919100","https://openalex.org/W2396707528","https://openalex.org/W2399361349","https://openalex.org/W2466965232","https://openalex.org/W2498631646","https://openalex.org/W2515648638","https://openalex.org/W2573741383","https://openalex.org/W2599524418","https://openalex.org/W2600132724","https://openalex.org/W2602657459","https://openalex.org/W2747175821","https://openalex.org/W2767377392","https://openalex.org/W2777639606","https://openalex.org/W2788142646","https://openalex.org/W2788348358","https://openalex.org/W2790472570","https://openalex.org/W2795687816","https://openalex.org/W2801309958","https://openalex.org/W2803031989","https://openalex.org/W2803058913","https://openalex.org/W2805049578","https://openalex.org/W2808051495","https://openalex.org/W2885720383","https://openalex.org/W2890545987","https://openalex.org/W2894424410","https://openalex.org/W2905817704","https://openalex.org/W2913868726","https://openalex.org/W2950086703","https://openalex.org/W2950843563","https://openalex.org/W2951545629","https://openalex.org/W2952214509","https://openalex.org/W2952240309","https://openalex.org/W2953365463","https://openalex.org/W2953757801","https://openalex.org/W2953866345","https://openalex.org/W2966980985","https://openalex.org/W2979772256","https://openalex.org/W2980061841","https://openalex.org/W2981545603","https://openalex.org/W2992041075","https://openalex.org/W2992605988","https://openalex.org/W3005889306","https://openalex.org/W3023976137","https://openalex.org/W3024133125","https://openalex.org/W3046260387","https://openalex.org/W3046312752","https://openalex.org/W3106092760","https://openalex.org/W3116641151","https://openalex.org/W3137422569","https://openalex.org/W3153378165","https://openalex.org/W6744924787","https://openalex.org/W6753654237","https://openalex.org/W6757443860","https://openalex.org/W6769965147"],"related_works":["https://openalex.org/W4251527294","https://openalex.org/W3090782779","https://openalex.org/W2037261263","https://openalex.org/W3149087629","https://openalex.org/W4231036715","https://openalex.org/W2032074591","https://openalex.org/W1986156575","https://openalex.org/W4242983818","https://openalex.org/W2970288912","https://openalex.org/W2751689993"],"abstract_inverted_index":{"Quantifying":[0],"cell":[1,6,32,49,71],"proportions,":[2],"especially":[3],"for":[4,43,112],"rare":[5,48,123,196],"types":[7,50],"in":[8,15,134],"some":[9,25],"scenarios,":[10],"is":[11,183],"of":[12,47,102,153,160,178,192,199],"great":[13],"value":[14],"tracking":[16],"signals":[17],"associated":[18],"with":[19],"certain":[20],"phenotypes":[21],"or":[22,77],"diseases.":[23],"Although":[24],"methods":[26],"have":[27],"been":[28],"proposed":[29,62],"to":[30,55,69,117,149,187],"infer":[31],"proportions":[33,46,73],"from":[34,74,142],"multicomponent":[35],"bulk":[36,193],"data,":[37],"they":[38],"are":[39,52,198],"substantially":[40],"less":[41],"effective":[42,110],"estimating":[44],"the":[45,95,150,157,165,168,189],"which":[51],"highly":[53],"sensitive":[54],"feature":[56,91],"outliers":[57],"and":[58,99,121,138,156,164,171],"collinearity.":[59],"Here":[60],"we":[61],"a":[63,83,119,184],"new":[64],"deconvolution":[65,190],"algorithm":[66],"named":[67],"ARIC":[68,81,129,148,182],"estimate":[70,132],"type":[72],"gene":[75,139],"expression":[76,140],"DNA":[78,136],"methylation":[79,137],"data.":[80],"employs":[82],"novel":[84],"two-step":[85],"marker":[86],"selection":[87],"strategy,":[88],"including":[89],"collinear":[90],"elimination":[92],"based":[93],"on":[94],"component-wise":[96],"condition":[97,158],"number":[98],"adaptive":[100],"removal":[101],"outlier":[103],"markers.":[104],"This":[105],"strategy":[106],"can":[107,130],"systematically":[108],"obtain":[109],"markers":[111],"weighted":[113],"$\\upsilon$-support":[114],"vector":[115],"regression":[116],"ensure":[118],"robust":[120],"precise":[122],"proportion":[124],"prediction.":[125],"We":[126,145],"showed":[127],"that":[128],"accurately":[131],"fractions":[133],"both":[135],"data":[141,194],"different":[143],"experiments.":[144],"further":[146],"applied":[147],"survival":[151],"prediction":[152],"ovarian":[154],"cancer":[155],"monitoring":[159],"chronic":[161],"kidney":[162],"disease,":[163],"results":[166],"demonstrate":[167],"high":[169],"accuracy":[170],"robustness":[172],"as":[173,175],"well":[174],"clinical":[176],"potentials":[177],"ARIC.":[179],"Taken":[180],"together,":[181],"promising":[185],"tool":[186],"solve":[188],"problem":[191],"where":[195],"components":[197],"vital":[200],"importance.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
