{"id":"https://openalex.org/W3198168376","doi":"https://doi.org/10.1093/bib/bbab340","title":"Graph representation learning in bioinformatics: trends, methods and applications","display_name":"Graph representation learning in bioinformatics: trends, methods and applications","publication_year":2021,"publication_date":"2021-08-03","ids":{"openalex":"https://openalex.org/W3198168376","doi":"https://doi.org/10.1093/bib/bbab340","mag":"3198168376","pmid":"https://pubmed.ncbi.nlm.nih.gov/34471921"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab340","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab340","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102010573","display_name":"Hai-Cheng Yi","orcid":"https://orcid.org/0000-0001-8339-396X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106108","display_name":"Xinjiang Technical Institute of Physics & Chemistry","ror":"https://ror.org/00x44h034","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106108"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hai-Cheng Yi","raw_affiliation_strings":["Chinese Academy of Sciences, Xinjiang Technical Institute of Physics and Chemistry, Urumqi 830011, China","University of Chinese Academy of Sciences, Beijing 100049, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chinese Academy of Sciences, Xinjiang Technical Institute of Physics and Chemistry, Urumqi 830011, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210106108"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, Beijing 100049, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060381913","display_name":"De-Shuang Huang","orcid":"https://orcid.org/0000-0002-6759-2691"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"De-Shuang Huang","raw_affiliation_strings":["Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Shanghai 201804, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Shanghai 201804, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027208445","display_name":"Chee Keong Kwoh","orcid":"https://orcid.org/0000-0002-8547-6387"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Chee Keong Kwoh","raw_affiliation_strings":["School of Computer Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore","institution_ids":["https://openalex.org/I172675005"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5019805735"],"corresponding_institution_ids":["https://openalex.org/I17145004"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":10.7326,"has_fulltext":false,"cited_by_count":221,"citation_normalized_percentile":{"value":0.99186654,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"23","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7215351462364197},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5378922820091248},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.5241851210594177},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4931041896343231},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.47800981998443604},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4517209231853485},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.4383503198623657},{"id":"https://openalex.org/keywords/graph-embedding","display_name":"Graph embedding","score":0.4117836058139801}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7215351462364197},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5378922820091248},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.5241851210594177},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4931041896343231},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.47800981998443604},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4517209231853485},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.4383503198623657},{"id":"https://openalex.org/C75564084","wikidata":"https://www.wikidata.org/wiki/Q5597085","display_name":"Graph embedding","level":3,"score":0.4117836058139801}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab340","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab340","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34471921","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34471921","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2336863437","display_name":null,"funder_award_id":"61722212","funder_id":"https://openalex.org/F4320309856","funder_display_name":"National Youth Science Foundation"},{"id":"https://openalex.org/G5294168992","display_name":null,"funder_award_id":"61873212","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G74711194","display_name":"\u57fa\u56e0\u7ec4\u975e\u7f16\u7801\u533a\u53d8\u5f02\u4e0e\u8f6c\u5f55\u56e0\u5b50\u8c03\u63a7\u5173\u7cfb\u7684\u8ba1\u7b97\u5206\u6790\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61732012","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320309856","display_name":"National Youth Science Foundation","ror":"https://ror.org/054yz2f06"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":209,"referenced_works":["https://openalex.org/W103340358","https://openalex.org/W348384746","https://openalex.org/W1501856433","https://openalex.org/W1529533208","https://openalex.org/W1888005072","https://openalex.org/W1984084871","https://openalex.org/W2001141328","https://openalex.org/W2009313526","https://openalex.org/W2018435536","https://openalex.org/W2021379602","https://openalex.org/W2046387002","https://openalex.org/W2047031939","https://openalex.org/W2050715692","https://openalex.org/W2053186076","https://openalex.org/W2062533676","https://openalex.org/W2062797058","https://openalex.org/W2067305633","https://openalex.org/W2075010670","https://openalex.org/W2088412871","https://openalex.org/W2090891622","https://openalex.org/W2097308346","https://openalex.org/W2101181377","https://openalex.org/W2102839669","https://openalex.org/W2103017472","https://openalex.org/W2116341502","https://openalex.org/W2123060905","https://openalex.org/W2124045889","https://openalex.org/W2127069089","https://openalex.org/W2136640051","https://openalex.org/W2142535891","https://openalex.org/W2145658888","https://openalex.org/W2146693559","https://openalex.org/W2148757128","https://openalex.org/W2154851992","https://openalex.org/W2155004936","https://openalex.org/W2157331557","https://openalex.org/W2221443338","https://openalex.org/W2311607323","https://openalex.org/W2313125707","https://openalex.org/W2387462954","https://openalex.org/W2393319904","https://openalex.org/W2415243320","https://openalex.org/W2502949459","https://openalex.org/W2531563875","https://openalex.org/W2583803680","https://openalex.org/W2585247128","https://openalex.org/W2599182148","https://openalex.org/W2607497028","https://openalex.org/W2607500032","https://openalex.org/W2612872092","https://openalex.org/W2624407581","https://openalex.org/W2735585131","https://openalex.org/W2743104969","https://openalex.org/W2746374269","https://openalex.org/W2759136286","https://openalex.org/W2784777439","https://openalex.org/W2787612455","https://openalex.org/W2796335668","https://openalex.org/W2796491734","https://openalex.org/W2806351858","https://openalex.org/W2808856341","https://openalex.org/W2808987817","https://openalex.org/W2809156537","https://openalex.org/W2809418595","https://openalex.org/W2809435521","https://openalex.org/W2907367312","https://openalex.org/W2907492528","https://openalex.org/W2911286998","https://openalex.org/W2911840101","https://openalex.org/W2911932738","https://openalex.org/W2912516411","https://openalex.org/W2913602408","https://openalex.org/W2913954081","https://openalex.org/W2915480215","https://openalex.org/W2931277979","https://openalex.org/W2937762029","https://openalex.org/W2945266622","https://openalex.org/W2948035163","https://openalex.org/W2950723285","https://openalex.org/W2950777612","https://openalex.org/W2950898568","https://openalex.org/W2957048678","https://openalex.org/W2962711740","https://openalex.org/W2962756421","https://openalex.org/W2962904108","https://openalex.org/W2962975498","https://openalex.org/W2963224980","https://openalex.org/W2963241951","https://openalex.org/W2963410212","https://openalex.org/W2963512530","https://openalex.org/W2963695795","https://openalex.org/W2963707260","https://openalex.org/W2963758104","https://openalex.org/W2964015378","https://openalex.org/W2964571482","https://openalex.org/W2969457089","https://openalex.org/W2972209102","https://openalex.org/W2972392269","https://openalex.org/W2977325883","https://openalex.org/W2977707586","https://openalex.org/W2982327501","https://openalex.org/W2992752586","https://openalex.org/W2994860160","https://openalex.org/W2995738274","https://openalex.org/W2997418660","https://openalex.org/W2997424030","https://openalex.org/W2997494090","https://openalex.org/W3000082418","https://openalex.org/W3000577518","https://openalex.org/W3005232784","https://openalex.org/W3006242222","https://openalex.org/W3006845127","https://openalex.org/W3009246021","https://openalex.org/W3011667710","https://openalex.org/W3012959663","https://openalex.org/W3016163458","https://openalex.org/W3021338900","https://openalex.org/W3025257690","https://openalex.org/W3026308742","https://openalex.org/W3027711990","https://openalex.org/W3033143713","https://openalex.org/W3034617560","https://openalex.org/W3036527662","https://openalex.org/W3036619032","https://openalex.org/W3039465695","https://openalex.org/W3040062994","https://openalex.org/W3047995329","https://openalex.org/W3048858802","https://openalex.org/W3080555959","https://openalex.org/W3080997787","https://openalex.org/W3096561213","https://openalex.org/W3096831136","https://openalex.org/W3099403815","https://openalex.org/W3099414221","https://openalex.org/W3101369110","https://openalex.org/W3102205844","https://openalex.org/W3104097132","https://openalex.org/W3104717349","https://openalex.org/W3105136071","https://openalex.org/W3105705953","https://openalex.org/W3110901318","https://openalex.org/W3126516421","https://openalex.org/W3133587129","https://openalex.org/W3134506101","https://openalex.org/W3136465512","https://openalex.org/W3137864305","https://openalex.org/W3147983081","https://openalex.org/W3152893301","https://openalex.org/W3154625936","https://openalex.org/W3157330827","https://openalex.org/W3167283626","https://openalex.org/W3169317859","https://openalex.org/W3171592446","https://openalex.org/W4206174637","https://openalex.org/W4210257598","https://openalex.org/W4288275971","https://openalex.org/W4288419263","https://openalex.org/W4294170691","https://openalex.org/W4294558607","https://openalex.org/W4297733535","https://openalex.org/W4297951436","https://openalex.org/W4322614756","https://openalex.org/W4385245566","https://openalex.org/W6611947346","https://openalex.org/W6682691769","https://openalex.org/W6683258052","https://openalex.org/W6685350579","https://openalex.org/W6690230747","https://openalex.org/W6690815549","https://openalex.org/W6698064614","https://openalex.org/W6726873649","https://openalex.org/W6730084236","https://openalex.org/W6736685754","https://openalex.org/W6738964360","https://openalex.org/W6739901393","https://openalex.org/W6745933383","https://openalex.org/W6746002097","https://openalex.org/W6746313456","https://openalex.org/W6746317448","https://openalex.org/W6746327351","https://openalex.org/W6747927160","https://openalex.org/W6747954111","https://openalex.org/W6748114039","https://openalex.org/W6748280624","https://openalex.org/W6748419877","https://openalex.org/W6748799445","https://openalex.org/W6749077313","https://openalex.org/W6750392246","https://openalex.org/W6751310286","https://openalex.org/W6752324499","https://openalex.org/W6754929296","https://openalex.org/W6755573351","https://openalex.org/W6760045743","https://openalex.org/W6766156693","https://openalex.org/W6766994275","https://openalex.org/W6771848067","https://openalex.org/W6772142627","https://openalex.org/W6772290290","https://openalex.org/W6772776185","https://openalex.org/W6773987490","https://openalex.org/W6779909743","https://openalex.org/W6780031824","https://openalex.org/W6781932242","https://openalex.org/W6790306636","https://openalex.org/W6791966216","https://openalex.org/W6793939853","https://openalex.org/W6796217273","https://openalex.org/W6796694783","https://openalex.org/W6797080381"],"related_works":["https://openalex.org/W3036264823","https://openalex.org/W3206528106","https://openalex.org/W2123605750","https://openalex.org/W2912814903","https://openalex.org/W2088740331","https://openalex.org/W2950907416","https://openalex.org/W3038102983","https://openalex.org/W2082479932","https://openalex.org/W4281484020","https://openalex.org/W2932872266"],"abstract_inverted_index":{"Graph":[0,69],"is":[1,52,60,218],"a":[2,12,77,128,203],"natural":[3],"data":[4,40],"structure":[5],"for":[6,181,226],"describing":[7],"complex":[8],"systems,":[9],"which":[10,59],"contains":[11],"set":[13],"of":[14,116,194,206],"objects":[15],"and":[16,84,91,96,106,120,130,133,138,153,169,179,188,192,212,236],"relationships.":[17],"Ubiquitous":[18],"real-life":[19],"biomedical":[20,57,89],"problems":[21],"can":[22],"be":[23],"modeled":[24],"as":[25],"graph":[26,75,82,117,141,145,148,151,154,184,195,208,233],"analytics":[27],"tasks.":[28],"Machine":[29],"learning,":[30,33],"especially":[31],"deep":[32],"succeeds":[34],"in":[35,42,54,102,124,198,215],"vast":[36],"bioinformatics":[37,107,238],"scenarios":[38],"with":[39],"represented":[41],"Euclidean":[43],"domain.":[44],"However,":[45],"rich":[46],"relational":[47],"information":[48],"between":[49],"biological":[50],"elements":[51],"retained":[53],"the":[55,114,190],"non-Euclidean":[56],"graphs,":[58],"not":[61],"learning":[62,67,71,94,105,119,186,197,210,235],"friendly":[63],"to":[64,73,166,228,232],"classic":[65],"machine":[66,93,104],"methods.":[68],"representation":[70,118,185,196,209,234],"aims":[72],"embed":[74],"into":[76],"low-dimensional":[78],"space":[79],"while":[80],"preserving":[81],"topology":[83],"node":[85],"properties.":[86],"It":[87,217],"bridges":[88],"graphs":[90],"modern":[92],"methods":[95,143,187],"has":[97],"recently":[98],"raised":[99],"widespread":[100],"interest":[101],"both":[103,140],"communities.":[108],"In":[109],"this":[110],"work,":[111],"we":[112,135,158,174],"summarize":[113,159],"advances":[115],"its":[121],"representative":[122,161],"applications":[123,162,214],"bioinformatics.":[125,199,216],"To":[126],"provide":[127,175],"comprehensive":[129,204],"structured":[131],"analysis":[132],"perspective,":[134],"first":[136],"categorize":[137],"analyze":[139],"embedding":[142],"(homogeneous":[144],"embedding,":[146,149],"heterogeneous":[147],"attribute":[150],"embedding)":[152],"neural":[155],"networks.":[156],"Furthermore,":[157],"their":[160,213,230],"from":[163],"molecular":[164],"level":[165],"genomics,":[167],"pharmaceutical":[168],"healthcare":[170],"systems":[171],"level.":[172],"Moreover,":[173],"open":[176],"resource":[177],"platforms":[178],"libraries":[180],"implementing":[182],"these":[183],"discuss":[189],"challenges":[191],"opportunities":[193],"This":[200],"work":[201],"provides":[202],"survey":[205],"emerging":[207],"algorithms":[211],"anticipated":[219],"that":[220],"it":[221],"could":[222],"bring":[223],"valuable":[224],"insights":[225],"researchers":[227],"contribute":[229],"knowledge":[231],"future-oriented":[237],"studies.":[239]},"counts_by_year":[{"year":2026,"cited_by_count":17},{"year":2025,"cited_by_count":59},{"year":2024,"cited_by_count":74},{"year":2023,"cited_by_count":54},{"year":2022,"cited_by_count":17}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
