{"id":"https://openalex.org/W3196225703","doi":"https://doi.org/10.1093/bib/bbab335","title":"DLpTCR: an ensemble deep learning framework for predicting immunogenic peptide recognized by T cell receptor","display_name":"DLpTCR: an ensemble deep learning framework for predicting immunogenic peptide recognized by T cell receptor","publication_year":2021,"publication_date":"2021-07-29","ids":{"openalex":"https://openalex.org/W3196225703","doi":"https://doi.org/10.1093/bib/bbab335","mag":"3196225703","pmid":"https://pubmed.ncbi.nlm.nih.gov/34415016"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab335","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab335","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018722475","display_name":"Zhaochun Xu","orcid":"https://orcid.org/0000-0003-1799-5529"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhaochun Xu","raw_affiliation_strings":["Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100634636","display_name":"Meng Luo","orcid":"https://orcid.org/0000-0003-0622-9060"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meng Luo","raw_affiliation_strings":["Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109225892","display_name":"Wei\u2010Zhong Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I105991555","display_name":"Jingdezhen Ceramic Institute","ror":"https://ror.org/01d0jcz74","country_code":"CN","type":"education","lineage":["https://openalex.org/I105991555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weizhong Lin","raw_affiliation_strings":["Center for Bioinformatics, Computer Department, Jingdezhen Ceramic Institute, Jingdezhen 333403, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Computer Department, Jingdezhen Ceramic Institute, Jingdezhen 333403, China","institution_ids":["https://openalex.org/I105991555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040431394","display_name":"Guangfu Xue","orcid":"https://orcid.org/0000-0002-5718-2314"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangfu Xue","raw_affiliation_strings":["Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100754138","display_name":"Pingping Wang","orcid":"https://orcid.org/0000-0001-8888-8005"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pingping Wang","raw_affiliation_strings":["Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040655235","display_name":"Xiyun Jin","orcid":"https://orcid.org/0000-0003-2795-6451"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiyun Jin","raw_affiliation_strings":["Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110771712","display_name":"Chang Xu","orcid":"https://orcid.org/0000-0002-5659-6654"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chang Xu","raw_affiliation_strings":["Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065919151","display_name":"Wenyang Zhou","orcid":"https://orcid.org/0000-0002-3676-0584"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenyang Zhou","raw_affiliation_strings":["Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010917006","display_name":"Yideng Cai","orcid":"https://orcid.org/0000-0003-3820-1804"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yideng Cai","raw_affiliation_strings":["Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016451520","display_name":"Wenyi Yang","orcid":"https://orcid.org/0009-0008-1176-0343"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenyi Yang","raw_affiliation_strings":["Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101821612","display_name":"Huan Nie","orcid":"https://orcid.org/0000-0001-9221-1283"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huan Nie","raw_affiliation_strings":["Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038875139","display_name":"Qinghua Jiang","orcid":"https://orcid.org/0000-0002-1827-0389"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qinghua Jiang","raw_affiliation_strings":["Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China","Key Laboratory of Biological Data (Harbin Institute of Technology), Ministry of Education, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Life Science and Technology, Harbin Institute of Technology, Harbin 150000, China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"Key Laboratory of Biological Data (Harbin Institute of Technology), Ministry of Education, China","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5038875139"],"corresponding_institution_ids":["https://openalex.org/I204983213"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":5.8562,"has_fulltext":false,"cited_by_count":99,"citation_normalized_percentile":{"value":0.974396,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"22","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/t-cell-receptor","display_name":"T-cell receptor","score":0.813289999961853},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6067458391189575},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5792516469955444},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.565852165222168},{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.5469024181365967},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.46991103887557983},{"id":"https://openalex.org/keywords/generality","display_name":"Generality","score":0.46588391065597534},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.44993308186531067},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.4475121796131134},{"id":"https://openalex.org/keywords/t-cell","display_name":"T cell","score":0.39173924922943115},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36254727840423584},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2999836206436157},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.2917318642139435},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.21498870849609375},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09686583280563354}],"concepts":[{"id":"https://openalex.org/C19317047","wikidata":"https://www.wikidata.org/wiki/Q412037","display_name":"T-cell receptor","level":4,"score":0.813289999961853},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6067458391189575},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5792516469955444},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.565852165222168},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.5469024181365967},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.46991103887557983},{"id":"https://openalex.org/C2780767217","wikidata":"https://www.wikidata.org/wiki/Q5532421","display_name":"Generality","level":2,"score":0.46588391065597534},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.44993308186531067},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.4475121796131134},{"id":"https://openalex.org/C2776090121","wikidata":"https://www.wikidata.org/wiki/Q193529","display_name":"T cell","level":3,"score":0.39173924922943115},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36254727840423584},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2999836206436157},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.2917318642139435},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.21498870849609375},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09686583280563354},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab335","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab335","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34415016","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34415016","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.5799999833106995,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G457249194","display_name":null,"funder_award_id":"62041102","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4941696472","display_name":null,"funder_award_id":"61822108","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6549098544","display_name":null,"funder_award_id":"62032007","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":80,"referenced_works":["https://openalex.org/W1923211482","https://openalex.org/W1976978745","https://openalex.org/W1988790447","https://openalex.org/W1990602451","https://openalex.org/W1996202672","https://openalex.org/W2010241902","https://openalex.org/W2021310372","https://openalex.org/W2024046085","https://openalex.org/W2048947602","https://openalex.org/W2068255192","https://openalex.org/W2068872497","https://openalex.org/W2091477384","https://openalex.org/W2095705004","https://openalex.org/W2112796928","https://openalex.org/W2139212933","https://openalex.org/W2141184378","https://openalex.org/W2141262236","https://openalex.org/W2157825442","https://openalex.org/W2256496883","https://openalex.org/W2271914738","https://openalex.org/W2424628474","https://openalex.org/W2471645096","https://openalex.org/W2522692516","https://openalex.org/W2585914811","https://openalex.org/W2613978126","https://openalex.org/W2615065404","https://openalex.org/W2636150609","https://openalex.org/W2670890989","https://openalex.org/W2671261300","https://openalex.org/W2724264513","https://openalex.org/W2728365508","https://openalex.org/W2735897797","https://openalex.org/W2752126733","https://openalex.org/W2755012395","https://openalex.org/W2775848633","https://openalex.org/W2789926271","https://openalex.org/W2795105768","https://openalex.org/W2803163155","https://openalex.org/W2808739938","https://openalex.org/W2828866824","https://openalex.org/W2887029338","https://openalex.org/W2894849296","https://openalex.org/W2898389621","https://openalex.org/W2899327929","https://openalex.org/W2904711643","https://openalex.org/W2911964244","https://openalex.org/W2925252074","https://openalex.org/W2941121701","https://openalex.org/W2949535114","https://openalex.org/W2952935243","https://openalex.org/W2961729414","https://openalex.org/W2966730819","https://openalex.org/W2972438906","https://openalex.org/W2979293383","https://openalex.org/W2979882137","https://openalex.org/W2982118748","https://openalex.org/W2982476296","https://openalex.org/W2987660980","https://openalex.org/W2991530390","https://openalex.org/W2995682549","https://openalex.org/W2998313390","https://openalex.org/W3007150491","https://openalex.org/W3039317077","https://openalex.org/W3040528450","https://openalex.org/W3042910002","https://openalex.org/W3049002444","https://openalex.org/W3080758869","https://openalex.org/W3090903754","https://openalex.org/W3099884890","https://openalex.org/W3110616739","https://openalex.org/W3113525558","https://openalex.org/W3129125493","https://openalex.org/W3165550622","https://openalex.org/W4254238137","https://openalex.org/W4256407664","https://openalex.org/W6644672383","https://openalex.org/W6674330103","https://openalex.org/W6780085595","https://openalex.org/W6787543007","https://openalex.org/W6821000344"],"related_works":["https://openalex.org/W2011835836","https://openalex.org/W2089872551","https://openalex.org/W1973836350","https://openalex.org/W2038509173","https://openalex.org/W2136036540","https://openalex.org/W2075125040","https://openalex.org/W2113488569","https://openalex.org/W3032468696","https://openalex.org/W2176905394","https://openalex.org/W2040128205"],"abstract_inverted_index":{"Accurate":[0],"prediction":[1],"of":[2,30,96,101,117,167],"immunogenic":[3,21,77],"peptide":[4,78,104,154,177,199],"recognized":[5,79],"by":[6,80,106,201],"T":[7],"cell":[8],"receptor":[9],"(TCR)":[10],"can":[11,216],"greatly":[12],"benefit":[13],"vaccine":[14],"development":[15],"and":[16,55,74,103,115,123,155,178,195],"cancer":[17],"immunotherapy.":[18],"However,":[19],"identifying":[20],"peptides":[22,33],"accurately":[23],"is":[24,65,206],"still":[25],"a":[26,48,86,211],"huge":[27],"challenge.":[28],"Most":[29],"the":[31,94,113,118,141,151,160,164,174,188],"antigen":[32,198],"predicted":[34,61],"in":[35,42],"silico":[36],"fail":[37],"to":[38,67,144,190,197],"elicit":[39],"immune":[40],"responses":[41],"vivo":[43],"without":[44],"considering":[45],"TCR":[46,102,157,180],"as":[47],"key":[49],"factor.":[50],"This":[51],"inevitably":[52],"causes":[53],"costly":[54],"time-consuming":[56],"experimental":[57],"validation":[58],"test":[59],"for":[60,72,92,128],"antigens.":[62],"Therefore,":[63],"it":[64],"necessary":[66],"develop":[68],"novel":[69],"computational":[70],"methods":[71],"precisely":[73],"effectively":[75],"predicting":[76,93,150,173],"TCR.":[81,202],"Here,":[82],"we":[83],"described":[84],"DLpTCR,":[85],"multimodal":[87],"ensemble":[88],"deep":[89],"learning":[90],"framework":[91],"likelihood":[95],"interaction":[97,152,175,193],"between":[98,153,176],"single/paired":[99],"chain(s)":[100],"presented":[105],"major":[107],"histocompatibility":[108],"complex":[109],"molecules.":[110],"To":[111],"investigate":[112],"generality":[114],"robustness":[116],"proposed":[119],"model,":[120],"COVID-19":[121,147],"data":[122,125,148,171],"IEDB":[124,170],"were":[126],"constructed":[127],"independent":[129],"evaluation.":[130],"The":[131,182],"DLpTCR":[132,161,186],"model":[133,162],"exhibited":[134],"high":[135],"predictive":[136],"power":[137],"with":[138],"area":[139],"under":[140],"curve":[142],"up":[143],"0.91":[145],"on":[146,169],"while":[149,172],"single":[156],"chain.":[158],"Additionally,":[159,210],"achieved":[163],"overall":[165],"accuracy":[166],"81.03%":[168],"paired":[179],"chains.":[181],"results":[183],"demonstrate":[184],"that":[185,215],"has":[187],"ability":[189],"learn":[191],"general":[192],"rules":[194],"generalize":[196],"recognition":[200],"A":[203],"user-friendly":[204],"webserver":[205],"available":[207],"at":[208],"http://jianglab.org.cn/DLpTCR/.":[209],"stand-alone":[212],"software":[213],"package":[214],"be":[217],"downloaded":[218],"from":[219],"https://github.com/jiangBiolab/DLpTCR.":[220]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":24},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":22},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":4}],"updated_date":"2026-04-01T17:29:45.350535","created_date":"2025-10-10T00:00:00"}
