{"id":"https://openalex.org/W3189151603","doi":"https://doi.org/10.1093/bib/bbab294","title":"Drug sensitivity prediction from cell line-based pharmacogenomics data: guidelines for developing machine learning models","display_name":"Drug sensitivity prediction from cell line-based pharmacogenomics data: guidelines for developing machine learning models","publication_year":2021,"publication_date":"2021-07-12","ids":{"openalex":"https://openalex.org/W3189151603","doi":"https://doi.org/10.1093/bib/bbab294","mag":"3189151603","pmid":"https://pubmed.ncbi.nlm.nih.gov/34382071"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab294","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab294","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8575017","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032352229","display_name":"Hossein Sharifi-Noghabi","orcid":"https://orcid.org/0000-0003-0515-9267"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Hossein Sharifi-Noghabi","raw_affiliation_strings":["Princess Margaret Cancer Centre, Toronto, Ontario, Canada","School of Computing Science, Simon Fraser University, Burnaby, British Columbia, Canada","Vancouver Prostate Center, Vancouver, British Columbia, Canada"],"raw_orcid":"https://orcid.org/0000-0003-0515-9267","affiliations":[{"raw_affiliation_string":"Princess Margaret Cancer Centre, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I2802654988"]},{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, British Columbia, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Vancouver Prostate Center, Vancouver, British Columbia, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112907193","display_name":"Soheil Jahangiri","orcid":"https://orcid.org/0000-0002-3772-792X"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Soheil Jahangiri-Tazehkand","raw_affiliation_strings":["Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada","Princess Margaret Cancer Centre, Toronto, Ontario, Canada","University of Toronto, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Princess Margaret Cancer Centre, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I2802654988"]},{"raw_affiliation_string":"University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066881174","display_name":"Petr Smirnov","orcid":"https://orcid.org/0000-0001-9395-8450"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Petr Smirnov","raw_affiliation_strings":["Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada","Princess Margaret Cancer Centre, Toronto, Ontario, Canada","University of Toronto, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Princess Margaret Cancer Centre, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I2802654988"]},{"raw_affiliation_string":"University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078724051","display_name":"C. Suk-Yee Hon","orcid":"https://orcid.org/0000-0002-7402-0843"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Casey Hon","raw_affiliation_strings":["Princess Margaret Cancer Centre, Toronto, Ontario, Canada","University of Toronto, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Princess Margaret Cancer Centre, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I2802654988"]},{"raw_affiliation_string":"University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085847953","display_name":"Anthony Mammoliti","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anthony Mammoliti","raw_affiliation_strings":["Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada","Princess Margaret Cancer Centre, Toronto, Ontario, Canada","University of Toronto, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Princess Margaret Cancer Centre, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I2802654988"]},{"raw_affiliation_string":"University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007037437","display_name":"Sisira Kadambat Nair","orcid":"https://orcid.org/0000-0003-0693-9994"},"institutions":[{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sisira Kadambat Nair","raw_affiliation_strings":["Princess Margaret Cancer Centre, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Princess Margaret Cancer Centre, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I2802654988"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011450761","display_name":"Arvind Singh Mer","orcid":"https://orcid.org/0000-0001-8510-7963"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Arvind Singh Mer","raw_affiliation_strings":["Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada","Princess Margaret Cancer Centre, Toronto, Ontario, Canada","University of Toronto, Toronto, Ontario, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Princess Margaret Cancer Centre, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I2802654988"]},{"raw_affiliation_string":"University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018267399","display_name":"Martin Ester","orcid":"https://orcid.org/0000-0001-7732-2815"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Martin Ester","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby, British Columbia, Canada","Vancouver Prostate Center, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, British Columbia, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Vancouver Prostate Center, Vancouver, British Columbia, Canada","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010487226","display_name":"Benjamin Haibe\u2010Kains","orcid":"https://orcid.org/0000-0002-7684-0079"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Benjamin Haibe-Kains","raw_affiliation_strings":["Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada","Ontario Institute for Cancer Research, Toronto, Ontario, Canada","Princess Margaret Cancer Centre, Toronto, Ontario, Canada","University of Toronto, Toronto, Ontario, Canada"],"raw_orcid":"https://orcid.org/0000-0002-7684-0079","affiliations":[{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Ontario Institute for Cancer Research, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"Princess Margaret Cancer Centre, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I2802654988"]},{"raw_affiliation_string":"University of Toronto, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I185261750"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5010487226","https://openalex.org/A5018267399"],"corresponding_institution_ids":["https://openalex.org/I112260969","https://openalex.org/I18014758","https://openalex.org/I185261750","https://openalex.org/I2802654988"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.1508,"has_fulltext":false,"cited_by_count":63,"citation_normalized_percentile":{"value":0.93821299,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"22","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pharmacogenomics","display_name":"Pharmacogenomics","score":0.8958133459091187},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.7092903852462769},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.6069710850715637},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5835610032081604},{"id":"https://openalex.org/keywords/drug-response","display_name":"Drug response","score":0.5485804677009583},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.5388111472129822},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5345401167869568},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.5241774916648865},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.47311708331108093},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.46654224395751953},{"id":"https://openalex.org/keywords/training-set","display_name":"Training set","score":0.44401898980140686},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.42351531982421875},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3494104743003845},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2866619825363159},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.15361648797988892},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.07730594277381897}],"concepts":[{"id":"https://openalex.org/C170734499","wikidata":"https://www.wikidata.org/wiki/Q1152227","display_name":"Pharmacogenomics","level":2,"score":0.8958133459091187},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7092903852462769},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.6069710850715637},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5835610032081604},{"id":"https://openalex.org/C2994119904","wikidata":"https://www.wikidata.org/wiki/Q1251001","display_name":"Drug response","level":3,"score":0.5485804677009583},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.5388111472129822},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5345401167869568},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.5241774916648865},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.47311708331108093},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.46654224395751953},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.44401898980140686},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.42351531982421875},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3494104743003845},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2866619825363159},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.15361648797988892},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.07730594277381897},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019008","descriptor_name":"Drug Resistance, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019008","descriptor_name":"Drug Resistance, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019008","descriptor_name":"Drug Resistance, Neoplasm","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbab294","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab294","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34382071","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34382071","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8575017","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8575017","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8575017","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8575017","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5246608960","display_name":null,"funder_award_id":"#363288","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"}],"funders":[{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":75,"referenced_works":["https://openalex.org/W19078547","https://openalex.org/W1967717472","https://openalex.org/W2011474181","https://openalex.org/W2018663224","https://openalex.org/W2022948223","https://openalex.org/W2043398720","https://openalex.org/W2108933868","https://openalex.org/W2120204563","https://openalex.org/W2125146087","https://openalex.org/W2125789330","https://openalex.org/W2131987814","https://openalex.org/W2139132031","https://openalex.org/W2152883907","https://openalex.org/W2171756499","https://openalex.org/W2175970000","https://openalex.org/W2261944919","https://openalex.org/W2318806991","https://openalex.org/W2344714812","https://openalex.org/W2407075689","https://openalex.org/W2416657206","https://openalex.org/W2424454289","https://openalex.org/W2461427403","https://openalex.org/W2508929473","https://openalex.org/W2557547609","https://openalex.org/W2558475804","https://openalex.org/W2559515797","https://openalex.org/W2589694786","https://openalex.org/W2612467560","https://openalex.org/W2621616899","https://openalex.org/W2747036018","https://openalex.org/W2759360483","https://openalex.org/W2767593474","https://openalex.org/W2792791113","https://openalex.org/W2802321540","https://openalex.org/W2886855629","https://openalex.org/W2887685819","https://openalex.org/W2921591500","https://openalex.org/W2949934519","https://openalex.org/W2950449244","https://openalex.org/W2953253500","https://openalex.org/W2955502047","https://openalex.org/W2955754489","https://openalex.org/W2956593667","https://openalex.org/W2959521790","https://openalex.org/W2982908687","https://openalex.org/W2987428409","https://openalex.org/W2994958138","https://openalex.org/W2995175648","https://openalex.org/W3000348967","https://openalex.org/W3000373012","https://openalex.org/W3001022866","https://openalex.org/W3019676419","https://openalex.org/W3035604179","https://openalex.org/W3037807288","https://openalex.org/W3042645205","https://openalex.org/W3085957665","https://openalex.org/W3087283263","https://openalex.org/W3094280424","https://openalex.org/W3094540299","https://openalex.org/W3103346559","https://openalex.org/W3103634428","https://openalex.org/W3124481204","https://openalex.org/W3139532774","https://openalex.org/W3200762293","https://openalex.org/W4229990962","https://openalex.org/W4232914613","https://openalex.org/W4234509242","https://openalex.org/W4321000873","https://openalex.org/W6600744685","https://openalex.org/W6688759404","https://openalex.org/W6763309955","https://openalex.org/W6765898395","https://openalex.org/W6769835417","https://openalex.org/W6783447867","https://openalex.org/W6785841378"],"related_works":["https://openalex.org/W2494489566","https://openalex.org/W4231349869","https://openalex.org/W2896304141","https://openalex.org/W4239789534","https://openalex.org/W4387225326","https://openalex.org/W2019271482","https://openalex.org/W1537547840","https://openalex.org/W4392425672","https://openalex.org/W2748688389","https://openalex.org/W2159063798"],"abstract_inverted_index":{"The":[0,139],"goal":[1],"of":[2,16,39,62,94,99,113,116,131,136,141,151],"precision":[3,40],"oncology":[4],"is":[5],"to":[6,48,74],"tailor":[7],"treatment":[8],"for":[9,32,59,83,96],"patients":[10],"individually":[11],"using":[12,104],"the":[13,28,54,114,126,129,149],"genomic":[14],"profile":[15],"their":[17],"tumors.":[18],"Pharmacogenomics":[19],"datasets":[20],"such":[21,79],"as":[22],"cancer":[23,63],"cell":[24,64,105],"lines":[25],"are":[26,68],"among":[27],"most":[29],"valuable":[30],"resources":[31],"drug":[33,50,84,117,137],"sensitivity":[34,51,85,118],"prediction,":[35],"a":[36,92],"crucial":[37],"task":[38],"oncology.":[41],"Machine":[42],"learning":[43,81],"methods":[44],"have":[45],"been":[46],"employed":[47],"predict":[49],"based":[52],"on":[53,72],"multiple":[55],"omics":[56],"data":[57],"available":[58],"large":[60],"panels":[61],"lines.":[65],"However,":[66],"there":[67],"no":[69],"comprehensive":[70],"guidelines":[71,95,109,143],"how":[73],"properly":[75],"train":[76],"and":[77,120,134],"validate":[78],"machine":[80],"models":[82],"prediction.":[86],"In":[87],"this":[88],"paper,":[89],"we":[90],"introduce":[91],"set":[93],"different":[97],"aspects":[98],"training":[100,132],"gene":[101],"expression-based":[102],"predictors":[103,119],"line":[106],"datasets.":[107],"These":[108],"provide":[110],"extensive":[111],"analysis":[112],"generalization":[115],"challenge":[121],"many":[122],"current":[123],"practices":[124],"in":[125,144],"community":[127],"including":[128],"choice":[130],"dataset":[133],"measure":[135],"sensitivity.":[138],"application":[140],"these":[142],"future":[145],"studies":[146],"will":[147],"enable":[148],"development":[150],"more":[152],"robust":[153],"preclinical":[154],"biomarkers.":[155]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":3}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
