{"id":"https://openalex.org/W3185131580","doi":"https://doi.org/10.1093/bib/bbab264","title":"<i>In silico</i> model for miRNA-mediated regulatory network in cancer","display_name":"<i>In silico</i> model for miRNA-mediated regulatory network in cancer","publication_year":2021,"publication_date":"2021-06-22","ids":{"openalex":"https://openalex.org/W3185131580","doi":"https://doi.org/10.1093/bib/bbab264","mag":"3185131580","pmid":"https://pubmed.ncbi.nlm.nih.gov/34279571"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab264","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab264","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8575005","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074491379","display_name":"Khandakar Tanvir Ahmed","orcid":null},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Khandakar Tanvir Ahmed","raw_affiliation_strings":["Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079380128","display_name":"Jiao Sun","orcid":"https://orcid.org/0000-0002-7480-025X"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiao Sun","raw_affiliation_strings":["Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101779022","display_name":"William Chen","orcid":"https://orcid.org/0000-0002-3251-3084"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Chen","raw_affiliation_strings":["Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108281617","display_name":"Irene Martinez","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Irene Martinez","raw_affiliation_strings":["Department of Molecular Biotechnology, Universit\u00e4t Heidelberg, Heidelberg, 69120, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biotechnology, Universit\u00e4t Heidelberg, Heidelberg, 69120, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000994867","display_name":"Sze Cheng","orcid":"https://orcid.org/0000-0002-0102-9812"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sze Cheng","raw_affiliation_strings":["Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota Twin Cities, Minneapolis, MN 55455, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota Twin Cities, Minneapolis, MN 55455, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063869673","display_name":"Wen Cai Zhang","orcid":"https://orcid.org/0000-0002-5274-527X"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Wencai Zhang","raw_affiliation_strings":["Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA","Division of Cancer Research, Burnett School of Biomedical Sciences, University of Central Florida, Orlando, FL 32827, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA","institution_ids":["https://openalex.org/I106165777"]},{"raw_affiliation_string":"Division of Cancer Research, Burnett School of Biomedical Sciences, University of Central Florida, Orlando, FL 32827, USA","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063869673","display_name":"Wen Cai Zhang","orcid":"https://orcid.org/0000-0002-5274-527X"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]},{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wencai Zhang","raw_affiliation_strings":["Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA","Division of Cancer Research, Burnett School of Biomedical Sciences, University of Central Florida, Orlando, FL 32827, USA","Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota Twin Cities, Minneapolis, MN 55455, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA","institution_ids":["https://openalex.org/I106165777"]},{"raw_affiliation_string":"Division of Cancer Research, Burnett School of Biomedical Sciences, University of Central Florida, Orlando, FL 32827, USA","institution_ids":["https://openalex.org/I106165777"]},{"raw_affiliation_string":"Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota Twin Cities, Minneapolis, MN 55455, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010172507","display_name":"Jeongsik Yong","orcid":"https://orcid.org/0000-0002-2758-0450"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]},{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jeongsik Yong","raw_affiliation_strings":["Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota Twin Cities, Minneapolis, MN 55455, USA","Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota Twin Cities, Minneapolis, MN 55455, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100637188","display_name":"Wei Zhang","orcid":"https://orcid.org/0000-0002-9179-236X"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Wei Zhang","raw_affiliation_strings":["Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA","Division of Cancer Research, Burnett School of Biomedical Sciences, University of Central Florida, Orlando, FL 32827, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA","institution_ids":["https://openalex.org/I106165777"]},{"raw_affiliation_string":"Division of Cancer Research, Burnett School of Biomedical Sciences, University of Central Florida, Orlando, FL 32827, USA","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100637188","display_name":"Wei Zhang","orcid":"https://orcid.org/0000-0002-9179-236X"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Zhang","raw_affiliation_strings":["Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA","Division of Cancer Research, Burnett School of Biomedical Sciences, University of Central Florida, Orlando, FL 32827, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Central Florida, Orlando, FL 32816, USA","institution_ids":["https://openalex.org/I106165777"]},{"raw_affiliation_string":"Division of Cancer Research, Burnett School of Biomedical Sciences, University of Central Florida, Orlando, FL 32827, USA","institution_ids":["https://openalex.org/I106165777"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5010172507","https://openalex.org/A5063869673","https://openalex.org/A5100637188"],"corresponding_institution_ids":["https://openalex.org/I106165777","https://openalex.org/I130238516"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.619,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.60876922,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"22","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.8015738725662231},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7506113052368164},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.648335874080658},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5986149311065674},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5626010894775391},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5603767037391663},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.5347551107406616},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4998893737792969},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4931575655937195},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.478943407535553},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.45897501707077026},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.43196767568588257},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4190952777862549},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.39947736263275146},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2422269880771637}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.8015738725662231},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7506113052368164},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.648335874080658},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5986149311065674},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5626010894775391},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5603767037391663},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.5347551107406616},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4998893737792969},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4931575655937195},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.478943407535553},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.45897501707077026},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.43196767568588257},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4190952777862549},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.39947736263275146},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2422269880771637}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbab264","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab264","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34279571","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34279571","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8575005","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8575005","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8575005","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8575005","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1005616485","display_name":null,"funder_award_id":"U24 DK097771","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G1316583835","display_name":null,"funder_award_id":"R01 GM113952","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7008153868","display_name":null,"funder_award_id":"2R01GM113952","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7648423714","display_name":null,"funder_award_id":"NSF-III1755761","funder_id":"https://openalex.org/F4320335353","funder_display_name":"National Science Foundation of Sri Lanka"},{"id":"https://openalex.org/G8169943893","display_name":null,"funder_award_id":"DK097771","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320335353","display_name":"National Science Foundation of Sri Lanka","ror":"https://ror.org/010xaa060"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":122,"referenced_works":["https://openalex.org/W83406085","https://openalex.org/W1542927170","https://openalex.org/W1632989995","https://openalex.org/W1914632472","https://openalex.org/W1958462865","https://openalex.org/W1964727443","https://openalex.org/W1965347187","https://openalex.org/W1968227795","https://openalex.org/W1973268693","https://openalex.org/W1975935257","https://openalex.org/W1981509058","https://openalex.org/W1985267020","https://openalex.org/W1986223104","https://openalex.org/W1989327873","https://openalex.org/W1993013702","https://openalex.org/W1995229013","https://openalex.org/W1996402529","https://openalex.org/W1999574084","https://openalex.org/W2008468705","https://openalex.org/W2032630075","https://openalex.org/W2035243232","https://openalex.org/W2036065307","https://openalex.org/W2044702943","https://openalex.org/W2047958755","https://openalex.org/W2069055522","https://openalex.org/W2069860553","https://openalex.org/W2073255619","https://openalex.org/W2083153453","https://openalex.org/W2084126321","https://openalex.org/W2084400739","https://openalex.org/W2092400840","https://openalex.org/W2095203473","https://openalex.org/W2096283457","https://openalex.org/W2096573862","https://openalex.org/W2099915768","https://openalex.org/W2103380468","https://openalex.org/W2114843025","https://openalex.org/W2116041602","https://openalex.org/W2119763913","https://openalex.org/W2121211805","https://openalex.org/W2123250471","https://openalex.org/W2123285201","https://openalex.org/W2123696077","https://openalex.org/W2129188378","https://openalex.org/W2134629862","https://openalex.org/W2135836598","https://openalex.org/W2137734450","https://openalex.org/W2139030718","https://openalex.org/W2139181770","https://openalex.org/W2149442044","https://openalex.org/W2150631512","https://openalex.org/W2152261156","https://openalex.org/W2153951236","https://openalex.org/W2159940325","https://openalex.org/W2160827892","https://openalex.org/W2162632348","https://openalex.org/W2165391797","https://openalex.org/W2167012935","https://openalex.org/W2174734928","https://openalex.org/W2186081307","https://openalex.org/W2191407368","https://openalex.org/W2254187956","https://openalex.org/W2283446040","https://openalex.org/W2300364148","https://openalex.org/W2304026376","https://openalex.org/W2324350519","https://openalex.org/W2346267653","https://openalex.org/W2395078506","https://openalex.org/W2419240200","https://openalex.org/W2460569037","https://openalex.org/W2464158929","https://openalex.org/W2524537335","https://openalex.org/W2530096609","https://openalex.org/W2531674656","https://openalex.org/W2537262399","https://openalex.org/W2559424287","https://openalex.org/W2560367415","https://openalex.org/W2570784089","https://openalex.org/W2604773248","https://openalex.org/W2605432963","https://openalex.org/W2612122212","https://openalex.org/W2612972698","https://openalex.org/W2740145402","https://openalex.org/W2789798659","https://openalex.org/W2790970997","https://openalex.org/W2799303691","https://openalex.org/W2808306050","https://openalex.org/W2885978836","https://openalex.org/W2911805374","https://openalex.org/W2914178603","https://openalex.org/W2922713651","https://openalex.org/W2937707002","https://openalex.org/W2945149722","https://openalex.org/W2952314558","https://openalex.org/W2952625363","https://openalex.org/W2965425969","https://openalex.org/W2972944913","https://openalex.org/W2989654021","https://openalex.org/W2990683738","https://openalex.org/W3006496940","https://openalex.org/W3010977833","https://openalex.org/W3015075691","https://openalex.org/W3028304854","https://openalex.org/W3117393006","https://openalex.org/W4255156463","https://openalex.org/W4297493876","https://openalex.org/W4297738700","https://openalex.org/W6674314894","https://openalex.org/W6677164697","https://openalex.org/W6677892499","https://openalex.org/W6683069548","https://openalex.org/W6687351232","https://openalex.org/W6711740558","https://openalex.org/W6717395821","https://openalex.org/W6718590282","https://openalex.org/W6719533180","https://openalex.org/W6752028984","https://openalex.org/W6770334430","https://openalex.org/W6778119663","https://openalex.org/W6788240705","https://openalex.org/W6836575638","https://openalex.org/W7073558341"],"related_works":["https://openalex.org/W2949927938","https://openalex.org/W2029387041","https://openalex.org/W2135896045","https://openalex.org/W2032799661","https://openalex.org/W2884256268","https://openalex.org/W2131025197","https://openalex.org/W2799842390","https://openalex.org/W2154615478","https://openalex.org/W2031892952","https://openalex.org/W3108451992"],"abstract_inverted_index":{"Deregulation":[0],"of":[1,9,55,143],"gene":[2,19,56,84],"expression":[3,20,27,85,101,151,164,175,192],"is":[4,40,49,204],"associated":[5],"with":[6,156],"the":[7,37,53,60,79,99,106,111,115,119,136,141,148,157,162,172,186,190],"pathogenesis":[8],"numerous":[10],"human":[11],"diseases":[12],"including":[13],"cancer.":[14],"Current":[15],"data":[16,46,159,193],"analyses":[17],"on":[18,24,124,181],"are":[21],"mostly":[22],"focused":[23],"differential":[25],"gene/transcript":[26],"in":[28,44,87],"big":[29],"data-driven":[30],"studies.":[31],"However,":[32],"a":[33,41,72,153],"poor":[34],"connection":[35],"to":[36,52,97,185],"proteome":[38],"changes":[39],"widespread":[42],"problem":[43],"current":[45],"analyses.":[47],"This":[48],"partly":[50],"due":[51],"complexity":[54],"regulatory":[57],"pathways":[58],"at":[59,206],"post-transcriptional":[61],"level.":[62],"In":[63],"this":[64],"study,":[65],"we":[66],"overcome":[67],"these":[68],"limitations":[69],"and":[70,102,118,126,146,199],"introduce":[71],"graph-based":[73],"learning":[74],"model,":[75],"PTNet,":[76],"which":[77],"simulates":[78],"microRNAs":[80],"(miRNAs)":[81],"that":[82,134,171],"regulate":[83],"post-transcriptionally":[86],"silico.":[88],"Our":[89],"model":[90],"does":[91],"not":[92],"require":[93],"large-scale":[94],"proteomics":[95,158],"studies":[96],"measure":[98],"protein":[100,107,150,174],"can":[103],"successfully":[104],"predict":[105],"levels":[108],"by":[109,189],"considering":[110,196],"miRNA-mRNA":[112],"interaction":[113,138],"network,":[114],"mRNA":[116,163,191,198],"expression,":[117],"miRNA":[120],"expression.":[121],"Large-scale":[122],"experiments":[123],"simulations":[125],"real":[127],"cancer":[128,182],"high-throughput":[129],"datasets":[130],"using":[131],"PTNet":[132,202],"validated":[133],"(i)":[135],"miRNA-mediated":[137],"network":[139],"affects":[140],"abundance":[142],"corresponding":[144],"proteins":[145],"(ii)":[147],"predicted":[149,173],"has":[152,176],"higher":[154],"correlation":[155],"(ground-truth)":[160],"than":[161],"data.":[165],"The":[166],"classification":[167],"performance":[168],"also":[169],"shows":[170],"an":[177],"improved":[178],"prediction":[179,187],"power":[180],"outcomes":[183],"compared":[184],"done":[188],"only":[194],"or":[195],"both":[197],"miRNA.":[200],"Availability:":[201],"toolbox":[203],"available":[205],"http://github.com/CompbioLabUCF/PTNet.":[207]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2}],"updated_date":"2026-06-25T08:15:23.626066","created_date":"2021-08-02T00:00:00"}
