{"id":"https://openalex.org/W3167140978","doi":"https://doi.org/10.1093/bib/bbab226","title":"DeepR2cov: deep representation learning on heterogeneous drug networks to discover anti-inflammatory agents for COVID-19","display_name":"DeepR2cov: deep representation learning on heterogeneous drug networks to discover anti-inflammatory agents for COVID-19","publication_year":2021,"publication_date":"2021-05-24","ids":{"openalex":"https://openalex.org/W3167140978","doi":"https://doi.org/10.1093/bib/bbab226","mag":"3167140978","pmid":"https://pubmed.ncbi.nlm.nih.gov/34117734"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab226","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab226","pdf_url":"https://academic.oup.com/bib/article-pdf/22/6/bbab226/41089070/bbab226.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/22/6/bbab226/41089070/bbab226.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100401784","display_name":"Xiaoqi Wang","orcid":"https://orcid.org/0009-0005-9586-6185"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoqi Wang","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090414025","display_name":"Bin Xin","orcid":"https://orcid.org/0000-0002-7284-1605"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Xin","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024421064","display_name":"Weihong Tan","orcid":"https://orcid.org/0000-0002-8066-1524"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weihong Tan","raw_affiliation_strings":["Chinese Academy of Sciences in the College of Chemistry and Chemical Engineering, College of Biology, Hunan University, China"],"affiliations":[{"raw_affiliation_string":"Chinese Academy of Sciences in the College of Chemistry and Chemical Engineering, College of Biology, Hunan University, China","institution_ids":["https://openalex.org/I16609230","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083748084","display_name":"Zhijian Xu","orcid":"https://orcid.org/0000-0002-3063-8473"},"institutions":[{"id":"https://openalex.org/I4210112820","display_name":"Shanghai Institute of Materia Medica","ror":"https://ror.org/022syn853","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112820"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhijian Xu","raw_affiliation_strings":["Drug Discovery and Design Center, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, China"],"affiliations":[{"raw_affiliation_string":"Drug Discovery and Design Center, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, China","institution_ids":["https://openalex.org/I4210112820","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078793726","display_name":"Kenli Li","orcid":"https://orcid.org/0000-0002-2635-7716"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kenli Li","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100325763","display_name":"Fei Li","orcid":"https://orcid.org/0000-0001-7386-0835"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fei Li","raw_affiliation_strings":["Computer Network Information Center, Chinese Academy of Sciences, China"],"affiliations":[{"raw_affiliation_string":"Computer Network Information Center, Chinese Academy of Sciences, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063216264","display_name":"Wu Zhong","orcid":"https://orcid.org/0000-0002-0536-620X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Wu Zhong","raw_affiliation_strings":["National Engineering Research Center for the Emergency Drug, Beijing Institute of Pharmacology and Toxicology, China"],"affiliations":[{"raw_affiliation_string":"National Engineering Research Center for the Emergency Drug, Beijing Institute of Pharmacology and Toxicology, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108008219","display_name":"Shaoliang Peng","orcid":"https://orcid.org/0000-0002-4647-2615"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shaoliang Peng","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, China","institution_ids":["https://openalex.org/I16609230"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5063216264","https://openalex.org/A5100325763","https://openalex.org/A5108008219"],"corresponding_institution_ids":["https://openalex.org/I16609230","https://openalex.org/I19820366","https://openalex.org/I4210108629"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":6.2101,"has_fulltext":true,"cited_by_count":48,"citation_normalized_percentile":{"value":0.96888703,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"22","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.8101578950881958},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.6870696544647217},{"id":"https://openalex.org/keywords/2019-20-coronavirus-outbreak","display_name":"2019-20 coronavirus outbreak","score":0.6505079865455627},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5743768215179443},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5680917501449585},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5288408994674683},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4893783926963806},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47145208716392517},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.4542054831981659},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4367968440055847},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.3004985451698303},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.24090120196342468},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.18349283933639526},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.17564091086387634},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14064475893974304},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.09084546566009521}],"concepts":[{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.8101578950881958},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.6870696544647217},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.6505079865455627},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5743768215179443},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5680917501449585},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5288408994674683},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4893783926963806},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47145208716392517},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.4542054831981659},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4367968440055847},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.3004985451698303},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.24090120196342468},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.18349283933639526},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.17564091086387634},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14064475893974304},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.09084546566009521},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000893","descriptor_name":"Anti-Inflammatory Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000893","descriptor_name":"Anti-Inflammatory Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000893","descriptor_name":"Anti-Inflammatory Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000893","descriptor_name":"Anti-Inflammatory Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000893","descriptor_name":"Anti-Inflammatory Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000893","descriptor_name":"Anti-Inflammatory Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D007249","descriptor_name":"Inflammation","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbab226","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab226","pdf_url":"https://academic.oup.com/bib/article-pdf/22/6/bbab226/41089070/bbab226.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34117734","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34117734","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8344611","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8344611","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbab226","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab226","pdf_url":"https://academic.oup.com/bib/article-pdf/22/6/bbab226/41089070/bbab226.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8500000238418579}],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1151522064","display_name":null,"funder_award_id":"U19A2","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1328409166","display_name":null,"funder_award_id":"61625202","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1477544716","display_name":null,"funder_award_id":"Guangdong","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2376276132","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2444451036","display_name":null,"funder_award_id":"2017YFB0202104","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3414779823","display_name":null,"funder_award_id":"2016YFB0200400","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3535329794","display_name":null,"funder_award_id":"2016YFB0200400","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3537633596","display_name":null,"funder_award_id":"202104","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3788934904","display_name":null,"funder_award_id":"2018YFC0910405","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4111034471","display_name":null,"funder_award_id":"U1435222","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4370257636","display_name":null,"funder_award_id":"2018YFC091040","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G466649759","display_name":null,"funder_award_id":"2017Y","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G4811743277","display_name":null,"funder_award_id":"2018YFC","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5053610798","display_name":null,"funder_award_id":"2017YFC","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G512176667","display_name":null,"funder_award_id":"61272056","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5259646120","display_name":null,"funder_award_id":"311003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5631792370","display_name":null,"funder_award_id":"61772543","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6108818243","display_name":null,"funder_award_id":"2017YFB0202602","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6593862345","display_name":null,"funder_award_id":"2018YFC0910405","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7241573085","display_name":null,"funder_award_id":"2017YFC1311003","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7572661501","display_name":null,"funder_award_id":"2016YFC1302500","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7752133304","display_name":null,"funder_award_id":"2016B090918122","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8028094890","display_name":null,"funder_award_id":"U19A2067","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8114646031","display_name":null,"funder_award_id":"2016Y","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8340078520","display_name":null,"funder_award_id":"2017YF","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G837820302","display_name":null,"funder_award_id":"2016B090918122","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8486657479","display_name":null,"funder_award_id":"2016B090918122","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G850960841","display_name":null,"funder_award_id":"2016YFC","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8617305348","display_name":null,"funder_award_id":"81973244","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8823009050","display_name":null,"funder_award_id":"2017YFB","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320326871","display_name":"State Key Laboratory of Chemo/Biosensing and Chemometrics","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3167140978.pdf","grobid_xml":"https://content.openalex.org/works/W3167140978.grobid-xml"},"referenced_works_count":79,"referenced_works":["https://openalex.org/W103340358","https://openalex.org/W1888005072","https://openalex.org/W1979537657","https://openalex.org/W1988037271","https://openalex.org/W1995773923","https://openalex.org/W2016029872","https://openalex.org/W2016921919","https://openalex.org/W2044424923","https://openalex.org/W2049137142","https://openalex.org/W2061489304","https://openalex.org/W2064953858","https://openalex.org/W2087064593","https://openalex.org/W2096541451","https://openalex.org/W2100553420","https://openalex.org/W2110283222","https://openalex.org/W2121604817","https://openalex.org/W2122863289","https://openalex.org/W2123688186","https://openalex.org/W2126690433","https://openalex.org/W2126707939","https://openalex.org/W2140099276","https://openalex.org/W2141433508","https://openalex.org/W2142572836","https://openalex.org/W2194775991","https://openalex.org/W2267917242","https://openalex.org/W2270070752","https://openalex.org/W2336207313","https://openalex.org/W2387462954","https://openalex.org/W2607497028","https://openalex.org/W2607500032","https://openalex.org/W2607532780","https://openalex.org/W2612436700","https://openalex.org/W2728927239","https://openalex.org/W2743104969","https://openalex.org/W2750779823","https://openalex.org/W2753953057","https://openalex.org/W2767891136","https://openalex.org/W2769641389","https://openalex.org/W2773987374","https://openalex.org/W2784178186","https://openalex.org/W2790127336","https://openalex.org/W2826750344","https://openalex.org/W2896002881","https://openalex.org/W2912083425","https://openalex.org/W2915806464","https://openalex.org/W2917858269","https://openalex.org/W2945027804","https://openalex.org/W2946099214","https://openalex.org/W2952522777","https://openalex.org/W2963707260","https://openalex.org/W2977235223","https://openalex.org/W2977707586","https://openalex.org/W3001118548","https://openalex.org/W3003038853","https://openalex.org/W3007160431","https://openalex.org/W3009859788","https://openalex.org/W3011072970","https://openalex.org/W3012421327","https://openalex.org/W3014003872","https://openalex.org/W3014537556","https://openalex.org/W3015228903","https://openalex.org/W3015861468","https://openalex.org/W3016538467","https://openalex.org/W3023982717","https://openalex.org/W3031411888","https://openalex.org/W3033319135","https://openalex.org/W3035125768","https://openalex.org/W3041467169","https://openalex.org/W3092381885","https://openalex.org/W3096999989","https://openalex.org/W3100751385","https://openalex.org/W3103218426","https://openalex.org/W3105705953","https://openalex.org/W3117562192","https://openalex.org/W3159592735","https://openalex.org/W6661880011","https://openalex.org/W6687483927","https://openalex.org/W6762206719","https://openalex.org/W6774943236"],"related_works":["https://openalex.org/W3010058077","https://openalex.org/W2920569584","https://openalex.org/W4200329650","https://openalex.org/W3127156785","https://openalex.org/W2951512731","https://openalex.org/W4205754011","https://openalex.org/W3009669391","https://openalex.org/W4205215807","https://openalex.org/W3005417802","https://openalex.org/W4226296940"],"abstract_inverted_index":{"Recent":[0],"studies":[1],"have":[2],"demonstrated":[3],"that":[4,85,109,155],"the":[5,41,51,65,99,121,148,174,180],"excessive":[6,42],"inflammatory":[7,43,181],"response":[8,44],"is":[9,166],"an":[10],"important":[11],"factor":[12],"of":[13,54,179],"death":[14],"in":[15,45,124,183],"coronavirus":[16],"disease":[17],"2019":[18],"(COVID-19)":[19],"patients.":[20,47,185],"In":[21,146,163],"this":[22],"study,":[23],"we":[24,68,105],"propose":[25],"a":[26,55,77,143,167],"deep":[27,78],"representation":[28,79,100,161,170],"on":[29,98,150],"heterogeneous":[30,56],"drug":[31,57],"networks,":[32],"termed":[33],"DeepR2cov,":[34],"to":[35,75,111,176],"discover":[36],"potential":[37,175],"agents":[38],"for":[39,81],"treating":[40],"COVID-19":[46,125,184],"This":[48],"work":[49],"explores":[50],"multi-hub":[52,66],"characteristic":[53],"network":[58,95,169],"integrating":[59],"eight":[60],"unique":[61],"networks.":[62],"Inspired":[63],"by":[64],"characteristic,":[67],"design":[69],"3":[70],"billion":[71],"special":[72],"meta":[73],"paths":[74],"train":[76],"model":[80,130],"learning":[82],"low-dimensional":[83],"vectors":[84,101],"integrate":[86],"long-range":[87],"structure":[88],"dependency":[89],"and":[90,102,127,142,172,189],"complex":[91],"semantic":[92],"relation":[93],"among":[94],"nodes.":[96],"Based":[97],"transcriptomics":[103],"data,":[104],"predict":[106],"22":[107],"drugs":[108],"bind":[110],"tumor":[112],"necrosis":[113],"factor-\u03b1":[114],"or":[115],"interleukin-6,":[116],"whose":[117],"therapeutic":[118],"associations":[119],"with":[120],"inflammation":[122],"storm":[123],"patients,":[126],"molecular":[128],"binding":[129],"are":[131],"further":[132],"validated":[133],"via":[134],"data":[135,190],"from":[136,194],"PubMed":[137],"publications,":[138],"ongoing":[139],"clinical":[140],"trials":[141],"docking":[144],"program.":[145],"addition,":[147],"results":[149],"five":[151,159],"biomedical":[152],"applications":[153],"suggest":[154],"DeepR2cov":[156,165],"significantly":[157],"outperforms":[158],"existing":[160],"approaches.":[162],"summary,":[164],"powerful":[168],"approach":[171],"holds":[173],"accelerate":[177],"treatment":[178],"responses":[182],"The":[186],"source":[187],"code":[188],"can":[191],"be":[192],"downloaded":[193],"https://github.com/pengsl-lab/DeepR2cov.git.":[195]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":7}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
