{"id":"https://openalex.org/W3160849062","doi":"https://doi.org/10.1093/bib/bbab178","title":"Identification of multiple RNAs using feature fusion","display_name":"Identification of multiple RNAs using feature fusion","publication_year":2021,"publication_date":"2021-04-15","ids":{"openalex":"https://openalex.org/W3160849062","doi":"https://doi.org/10.1093/bib/bbab178","mag":"3160849062","pmid":"https://pubmed.ncbi.nlm.nih.gov/33971667"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab178","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab178","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001119081","display_name":"Dalwinder Singh","orcid":"https://orcid.org/0000-0002-8076-4435"},"institutions":[{"id":"https://openalex.org/I4210164849","display_name":"BRIC-National Agri-Food and Biomanufacturing Institute","ror":"https://ror.org/05nnsek89","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210164849"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Dalwinder Singh","raw_affiliation_strings":["National Agri-Food Biotechnology Institute, Sector 81, SAS Nagar, 140306, Punjab, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Agri-Food Biotechnology Institute, Sector 81, SAS Nagar, 140306, Punjab, India","institution_ids":["https://openalex.org/I4210164849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062360155","display_name":"Akansha Madhawan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210164849","display_name":"BRIC-National Agri-Food and Biomanufacturing Institute","ror":"https://ror.org/05nnsek89","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210164849"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Akansha Madhawan","raw_affiliation_strings":["National Agri-Food Biotechnology Institute, Sector 81, SAS Nagar, 140306, Punjab, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Agri-Food Biotechnology Institute, Sector 81, SAS Nagar, 140306, Punjab, India","institution_ids":["https://openalex.org/I4210164849"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080897924","display_name":"Joy Roy","orcid":"https://orcid.org/0000-0001-5441-3538"},"institutions":[{"id":"https://openalex.org/I4210164849","display_name":"BRIC-National Agri-Food and Biomanufacturing Institute","ror":"https://ror.org/05nnsek89","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210164849"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Joy Roy","raw_affiliation_strings":["National Agri-Food Biotechnology Institute, Sector 81, SAS Nagar, 140306, Punjab, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Agri-Food Biotechnology Institute, Sector 81, SAS Nagar, 140306, Punjab, India","institution_ids":["https://openalex.org/I4210164849"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5001119081","https://openalex.org/A5080897924"],"corresponding_institution_ids":["https://openalex.org/I4210164849"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.2653,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.47271702,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"22","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6075810790061951},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5991649627685547},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5227358937263489},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4951254427433014},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.4497143030166626},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39059069752693176},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32386064529418945},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1605444848537445},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14098718762397766}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6075810790061951},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5991649627685547},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5227358937263489},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4951254427433014},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.4497143030166626},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39059069752693176},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32386064529418945},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1605444848537445},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14098718762397766},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab178","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab178","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33971667","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33971667","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6100000143051147}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":77,"referenced_works":["https://openalex.org/W1664770958","https://openalex.org/W1922426592","https://openalex.org/W1967102258","https://openalex.org/W1970917709","https://openalex.org/W1998422171","https://openalex.org/W2005262108","https://openalex.org/W2012739246","https://openalex.org/W2028444170","https://openalex.org/W2036224872","https://openalex.org/W2038971587","https://openalex.org/W2039051707","https://openalex.org/W2041246860","https://openalex.org/W2045938670","https://openalex.org/W2048194168","https://openalex.org/W2052446636","https://openalex.org/W2054427310","https://openalex.org/W2061548680","https://openalex.org/W2062502437","https://openalex.org/W2072070523","https://openalex.org/W2075320162","https://openalex.org/W2075676541","https://openalex.org/W2084821192","https://openalex.org/W2087377443","https://openalex.org/W2101234009","https://openalex.org/W2108206849","https://openalex.org/W2118023394","https://openalex.org/W2118420574","https://openalex.org/W2119884047","https://openalex.org/W2126326837","https://openalex.org/W2133824856","https://openalex.org/W2150803908","https://openalex.org/W2153268494","https://openalex.org/W2154914888","https://openalex.org/W2156270929","https://openalex.org/W2159479647","https://openalex.org/W2164267347","https://openalex.org/W2172030723","https://openalex.org/W2177321125","https://openalex.org/W2221437767","https://openalex.org/W2295598076","https://openalex.org/W2415774299","https://openalex.org/W2512299449","https://openalex.org/W2529308621","https://openalex.org/W2559671899","https://openalex.org/W2571489439","https://openalex.org/W2615786037","https://openalex.org/W2740619578","https://openalex.org/W2753719005","https://openalex.org/W2755267339","https://openalex.org/W2765094054","https://openalex.org/W2801558044","https://openalex.org/W2805813857","https://openalex.org/W2807607992","https://openalex.org/W2886900083","https://openalex.org/W2886966121","https://openalex.org/W2896723775","https://openalex.org/W2905744876","https://openalex.org/W2907847267","https://openalex.org/W2912545752","https://openalex.org/W2913973558","https://openalex.org/W2914698725","https://openalex.org/W2929522192","https://openalex.org/W2945020349","https://openalex.org/W2951413354","https://openalex.org/W2963367647","https://openalex.org/W2981537718","https://openalex.org/W2989955733","https://openalex.org/W2995201943","https://openalex.org/W3013495013","https://openalex.org/W3026425509","https://openalex.org/W3049179218","https://openalex.org/W3102476541","https://openalex.org/W3102734422","https://openalex.org/W4394639795","https://openalex.org/W6675354045","https://openalex.org/W6731700065","https://openalex.org/W6762911047"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4224009465","https://openalex.org/W4306674287","https://openalex.org/W4286629047","https://openalex.org/W4384212932","https://openalex.org/W4205958290","https://openalex.org/W2990460313","https://openalex.org/W2973458857","https://openalex.org/W4306321456","https://openalex.org/W2982642565"],"abstract_inverted_index":{"Detection":[0],"of":[1,29,55,58,176,185,198],"novel":[2],"transcripts":[3,32],"with":[4,125],"deep":[5],"sequencing":[6],"has":[7],"increased":[8],"the":[9,48,53,56,79,91,104,122,137,174,195],"demand":[10],"for":[11,41,179,194],"computational":[12],"algorithms":[13],"as":[14],"their":[15,42,68],"identification":[16,54,197],"and":[17,26,84,98,114,117,136,143,161],"validation":[18],"using":[19],"in":[20,61,168],"vivo":[21],"techniques":[22],"is":[23,64,139,190],"time-consuming,":[24],"costly":[25],"unreliable.":[27],"Most":[28],"these":[30],"discovered":[31],"belong":[33],"to":[34,66,108,120],"non-coding":[35,97,100],"RNAs,":[36],"a":[37,191],"large":[38],"group":[39],"known":[40],"diverse":[43],"functional":[44,70],"roles":[45],"but":[46],"lacks":[47],"common":[49],"taxonomy.":[50],"Thus,":[51],"upon":[52],"absence":[57],"coding":[59,169],"potential":[60,170],"them,":[62],"it":[63],"crucial":[65],"recognize":[67],"prime":[69],"category.":[71],"To":[72],"address":[73],"this":[74],"heterogeneity":[75],"issue,":[76],"we":[77],"divide":[78],"ncRNAs":[80],"into":[81,93],"three":[82],"classes":[83],"present":[85],"RNA":[86],"classifier":[87],"(RNAC)":[88],"that":[89],"categorizes":[90],"RNAs":[92,200],"coding,":[94],"housekeeping,":[95],"small":[96],"long":[99],"classes.":[101],"RNAC":[102,189],"utilizes":[103],"alignment-based":[105],"genomic":[106],"descriptors":[107],"extract":[109],"statistical,":[110],"local":[111],"binary":[112,145],"patterns":[113],"histogram":[115],"features":[116],"fuse":[118],"them":[119],"construct":[121],"classification":[123,146,159,186],"models":[124],"extreme":[126],"gradient":[127],"boosting.":[128],"The":[129,151],"experiments":[130],"are":[131],"performed":[132],"on":[133,141,157,182],"four":[134],"species,":[135],"performance":[138,181],"assessed":[140],"multiclass":[142],"conventional":[144],"(coding":[147],"versus":[148],"no-coding)":[149],"problems.":[150,187],"proposed":[152],"approach":[153],"achieved":[154],">93%":[155],"accuracy":[156],"both":[158,183],"problems":[160],"also":[162],"outperformed":[163],"other":[164],"well-known":[165],"existing":[166],"methods":[167],"prediction.":[171],"This":[172],"validates":[173],"usefulness":[175],"feature":[177],"fusion":[178],"improved":[180],"types":[184],"Hence,":[188],"valuable":[192],"tool":[193],"accurate":[196],"multiple":[199],".":[201]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
