{"id":"https://openalex.org/W3161577295","doi":"https://doi.org/10.1093/bib/bbab171","title":"MHCBI: a pipeline for calculating peptide-MHC binding energy using semi-empirical quantum mechanical methods with explicit/implicit solvent models","display_name":"MHCBI: a pipeline for calculating peptide-MHC binding energy using semi-empirical quantum mechanical methods with explicit/implicit solvent models","publication_year":2021,"publication_date":"2021-04-12","ids":{"openalex":"https://openalex.org/W3161577295","doi":"https://doi.org/10.1093/bib/bbab171","mag":"3161577295","pmid":"https://pubmed.ncbi.nlm.nih.gov/33979434"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab171","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab171","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060556181","display_name":"Carlos A. Ortiz-Mahecha","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108383","display_name":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia","ror":"https://ror.org/01j543957","country_code":"CO","type":"nonprofit","lineage":["https://openalex.org/I4210108383"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Carlos A Ortiz-Mahecha","raw_affiliation_strings":["Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia, Bogota DC, Colombia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia, Bogota DC, Colombia","institution_ids":["https://openalex.org/I4210108383"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108811772","display_name":"William A. Agudelo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108383","display_name":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia","ror":"https://ror.org/01j543957","country_code":"CO","type":"nonprofit","lineage":["https://openalex.org/I4210108383"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"William A Agudelo","raw_affiliation_strings":["Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia, Bogota DC, Colombia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia, Bogota DC, Colombia","institution_ids":["https://openalex.org/I4210108383"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114375721","display_name":"Manuel A. Patarroyo","orcid":"https://orcid.org/0000-0002-4751-2500"},"institutions":[{"id":"https://openalex.org/I4210108383","display_name":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia","ror":"https://ror.org/01j543957","country_code":"CO","type":"nonprofit","lineage":["https://openalex.org/I4210108383"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Manuel A Patarroyo","raw_affiliation_strings":["Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia, Bogota DC, Colombia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia, Bogota DC, Colombia","institution_ids":["https://openalex.org/I4210108383"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042652382","display_name":"Manuel E. Patarroyo","orcid":"https://orcid.org/0000-0002-1119-6040"},"institutions":[{"id":"https://openalex.org/I4210108383","display_name":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia","ror":"https://ror.org/01j543957","country_code":"CO","type":"nonprofit","lineage":["https://openalex.org/I4210108383"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Manuel E Patarroyo","raw_affiliation_strings":["Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia, Bogota DC, Colombia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia, Bogota DC, Colombia","institution_ids":["https://openalex.org/I4210108383"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056895607","display_name":"Carlos F. Su\u00e1rez","orcid":"https://orcid.org/0000-0001-8423-408X"},"institutions":[{"id":"https://openalex.org/I4210108383","display_name":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia","ror":"https://ror.org/01j543957","country_code":"CO","type":"nonprofit","lineage":["https://openalex.org/I4210108383"]}],"countries":["CO"],"is_corresponding":true,"raw_author_name":"Carlos F Su\u00e1rez","raw_affiliation_strings":["Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia, Bogota DC, Colombia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fundaci\u00f3n Instituto de Inmunolog\u00eda de Colombia, Bogota DC, Colombia","institution_ids":["https://openalex.org/I4210108383"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5056895607"],"corresponding_institution_ids":["https://openalex.org/I4210108383"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.1628,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.48244665,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":"22","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.776130199432373},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6466894745826721},{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.5888928174972534},{"id":"https://openalex.org/keywords/quantum","display_name":"Quantum","score":0.5446842908859253},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.4826138913631439},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.44512882828712463},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3508780598640442},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.34785526990890503},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.31488317251205444},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1804952621459961},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1789667010307312},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.12737667560577393},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12713873386383057},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.10370489954948425},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.0779152512550354}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.776130199432373},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6466894745826721},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.5888928174972534},{"id":"https://openalex.org/C84114770","wikidata":"https://www.wikidata.org/wiki/Q46344","display_name":"Quantum","level":2,"score":0.5446842908859253},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.4826138913631439},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.44512882828712463},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3508780598640442},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.34785526990890503},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.31488317251205444},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1804952621459961},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1789667010307312},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.12737667560577393},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12713873386383057},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.10370489954948425},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0779152512550354},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006649","descriptor_name":"Histocompatibility Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011789","descriptor_name":"Quantum Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011789","descriptor_name":"Quantum Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011789","descriptor_name":"Quantum Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab171","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab171","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33979434","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33979434","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.7599999904632568,"display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W967484727","https://openalex.org/W1850503613","https://openalex.org/W1943788890","https://openalex.org/W1983558201","https://openalex.org/W1992426410","https://openalex.org/W1997151511","https://openalex.org/W1999163821","https://openalex.org/W2006727531","https://openalex.org/W2011805684","https://openalex.org/W2018820180","https://openalex.org/W2020923013","https://openalex.org/W2022950330","https://openalex.org/W2025178360","https://openalex.org/W2029667189","https://openalex.org/W2045868870","https://openalex.org/W2055563809","https://openalex.org/W2056213804","https://openalex.org/W2088162897","https://openalex.org/W2088970363","https://openalex.org/W2089608446","https://openalex.org/W2109018577","https://openalex.org/W2119761838","https://openalex.org/W2132629607","https://openalex.org/W2137940095","https://openalex.org/W2157038428","https://openalex.org/W2160704994","https://openalex.org/W2221713243","https://openalex.org/W2289855849","https://openalex.org/W2327581403","https://openalex.org/W2337403656","https://openalex.org/W2395521783","https://openalex.org/W2514929667","https://openalex.org/W2560617093","https://openalex.org/W2583187043","https://openalex.org/W2597129987","https://openalex.org/W2687583174","https://openalex.org/W2769925250","https://openalex.org/W2898389621","https://openalex.org/W2899481329","https://openalex.org/W2989750807","https://openalex.org/W3095301435","https://openalex.org/W6673087651"],"related_works":["https://openalex.org/W1979044599","https://openalex.org/W2021824670","https://openalex.org/W2009867644","https://openalex.org/W2363997565","https://openalex.org/W1981120125","https://openalex.org/W3036615648","https://openalex.org/W2408448169","https://openalex.org/W2182598264","https://openalex.org/W2075879923","https://openalex.org/W2060253881"],"abstract_inverted_index":{"Experimentally":[0],"estimating":[1],"peptide-major":[2],"histocompatibility":[3],"complex":[4],"(pMHC)":[5],"binding":[6,40,65],"affinity":[7],"has":[8],"been":[9],"quite":[10],"challenging":[11],"due":[12],"to":[13,41,86],"the":[14,18,34,72,80],"many":[15,19],"receptors":[16],"and":[17,62,91],"potential":[20],"ligands":[21],"implicated":[22],"in":[23,38],"it.":[24],"We":[25,47],"have":[26,48],"thus":[27],"proposed":[28],"a":[29,50],"straightforward":[30],"computational":[31],"methodology":[32,73],"considering":[33],"different":[35],"mechanisms":[36],"involved":[37],"pMHC":[39,59,76],"facilitate":[42],"studying":[43],"such":[44],"receptor-ligand":[45],"interactions.":[46],"developed":[49],"pipeline":[51,69],"using":[52],"semi-empirical":[53],"quantum":[54],"mechanical":[55],"methods":[56],"for":[57,74],"calculating":[58,75],"class":[60],"I":[61],"II":[63],"molecules'":[64],"energy":[66],"(BE).":[67],"This":[68],"can":[70],"systematize":[71],"system":[77],"BE,":[78],"enabling":[79],"rational":[81],"design":[82],"of":[83],"T-cell":[84],"epitopes":[85],"be":[87],"used":[88],"as":[89],"pharmaceuticals":[90],"vaccines.":[92]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
