{"id":"https://openalex.org/W3152586663","doi":"https://doi.org/10.1093/bib/bbab117","title":"Deep drug-target binding affinity prediction with multiple attention blocks","display_name":"Deep drug-target binding affinity prediction with multiple attention blocks","publication_year":2021,"publication_date":"2021-03-15","ids":{"openalex":"https://openalex.org/W3152586663","doi":"https://doi.org/10.1093/bib/bbab117","mag":"3152586663","pmid":"https://pubmed.ncbi.nlm.nih.gov/33866349"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab117","pdf_url":"https://academic.oup.com/bib/article-pdf/22/5/bbab117/40260749/bbab117.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/22/5/bbab117/40260749/bbab117.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065051174","display_name":"Yuni Zeng","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuni Zeng","raw_affiliation_strings":["College of Computer Science, Sichuan University, Chengdu, Sichuan,610065, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science, Sichuan University, Chengdu, Sichuan,610065, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074941666","display_name":"Xiangru Chen","orcid":"https://orcid.org/0000-0003-4722-2084"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangru Chen","raw_affiliation_strings":["College of Computer Science, Sichuan University, Chengdu, Sichuan,610065, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science, Sichuan University, Chengdu, Sichuan,610065, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005349260","display_name":"Yujie Luo","orcid":"https://orcid.org/0000-0003-4070-4144"},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yujie Luo","raw_affiliation_strings":["Shenzhen Peng Cheng Laboratory, Shenzhen, 518052, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Peng Cheng Laboratory, Shenzhen, 518052, China","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100708343","display_name":"Xuedong Li","orcid":"https://orcid.org/0000-0002-9154-7452"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xuedong Li","raw_affiliation_strings":["Chengdu Sobey Digital Technology Co., Ltd, Chengdu, 610041,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chengdu Sobey Digital Technology Co., Ltd, Chengdu, 610041,China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027770821","display_name":"Dezhong Peng","orcid":"https://orcid.org/0000-0002-0987-8472"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dezhong Peng","raw_affiliation_strings":["College of Computer Science, Sichuan University, Chengdu, Sichuan,610065, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science, Sichuan University, Chengdu, Sichuan,610065, China","institution_ids":["https://openalex.org/I24185976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5027770821"],"corresponding_institution_ids":["https://openalex.org/I24185976"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":11.5811,"has_fulltext":true,"cited_by_count":111,"citation_normalized_percentile":{"value":0.98821,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"22","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9742000102996826,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9733999967575073,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6187095642089844},{"id":"https://openalex.org/keywords/block","display_name":"Block (permutation group theory)","score":0.5968875885009766},{"id":"https://openalex.org/keywords/concatenation","display_name":"Concatenation (mathematics)","score":0.5591447353363037},{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.49255356192588806},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.48891153931617737},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.48118168115615845},{"id":"https://openalex.org/keywords/position","display_name":"Position (finance)","score":0.46447455883026123},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4513300657272339},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.44220903515815735},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.43460142612457275},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4006524980068207},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3586035370826721},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2877330183982849},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1715615689754486},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13871636986732483},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1147584617137909},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.07723668217658997}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6187095642089844},{"id":"https://openalex.org/C2777210771","wikidata":"https://www.wikidata.org/wiki/Q4927124","display_name":"Block (permutation group theory)","level":2,"score":0.5968875885009766},{"id":"https://openalex.org/C87619178","wikidata":"https://www.wikidata.org/wiki/Q126002","display_name":"Concatenation (mathematics)","level":2,"score":0.5591447353363037},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.49255356192588806},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.48891153931617737},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.48118168115615845},{"id":"https://openalex.org/C198082294","wikidata":"https://www.wikidata.org/wiki/Q3399648","display_name":"Position (finance)","level":2,"score":0.46447455883026123},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4513300657272339},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.44220903515815735},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.43460142612457275},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4006524980068207},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3586035370826721},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2877330183982849},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1715615689754486},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13871636986732483},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1147584617137909},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.07723668217658997},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbab117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab117","pdf_url":"https://academic.oup.com/bib/article-pdf/22/5/bbab117/40260749/bbab117.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33866349","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33866349","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8083346","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8083346","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbab117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab117","pdf_url":"https://academic.oup.com/bib/article-pdf/22/5/bbab117/40260749/bbab117.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7400000095367432}],"awards":[{"id":"https://openalex.org/G3663088775","display_name":null,"funder_award_id":"Grants No. 61971296","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5162740653","display_name":"\u57fa\u4e8e\u65f6\u9891\u7a00\u758f\u8868\u793a\u4e0e\u81ea\u9002\u5e94\u5b50\u7a7a\u95f4\u5b66\u4e60\u7684\u76f8\u5173\u4fe1\u53f7\u76f2\u6e90\u5206\u79bb\u7814\u7a76","funder_award_id":"61971296","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6584906598","display_name":null,"funder_award_id":"U19A2078","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3152586663.pdf","grobid_xml":"https://content.openalex.org/works/W3152586663.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1527782499","https://openalex.org/W1904365287","https://openalex.org/W2023782921","https://openalex.org/W2035585923","https://openalex.org/W2086286404","https://openalex.org/W2109991441","https://openalex.org/W2113494611","https://openalex.org/W2126671570","https://openalex.org/W2145962544","https://openalex.org/W2155157373","https://openalex.org/W2278744106","https://openalex.org/W2297764176","https://openalex.org/W2592742128","https://openalex.org/W2605952223","https://openalex.org/W2754595644","https://openalex.org/W2785947426","https://openalex.org/W2807792492","https://openalex.org/W2911871527","https://openalex.org/W2952522777","https://openalex.org/W2955251621","https://openalex.org/W2974531988","https://openalex.org/W2978329087","https://openalex.org/W3000043291","https://openalex.org/W3000369508","https://openalex.org/W3006242247","https://openalex.org/W3012994592","https://openalex.org/W3014881833","https://openalex.org/W3015490653","https://openalex.org/W3039465695","https://openalex.org/W3042558069","https://openalex.org/W3088849005","https://openalex.org/W3098189759","https://openalex.org/W6637242042","https://openalex.org/W6640036494","https://openalex.org/W6687483927","https://openalex.org/W6739901393","https://openalex.org/W6747753452","https://openalex.org/W6755411197","https://openalex.org/W6767235624","https://openalex.org/W6773808170","https://openalex.org/W6780226713"],"related_works":["https://openalex.org/W2373577936","https://openalex.org/W3095575180","https://openalex.org/W2389596151","https://openalex.org/W4221148444","https://openalex.org/W4226054107","https://openalex.org/W4387678054","https://openalex.org/W2468279273","https://openalex.org/W4306784355","https://openalex.org/W2784004155","https://openalex.org/W4246226292"],"abstract_inverted_index":{"Drug-target":[0],"interaction":[1,59,113,155],"(DTI)":[2],"prediction":[3,27,129],"has":[4],"drawn":[5],"increasing":[6],"interest":[7],"due":[8],"to":[9,24,82,97,195],"its":[10],"substantial":[11],"position":[12,174,183],"in":[13,70],"the":[14,35,46,58,84,95,100,112,121,144,149,154,159,166,169,179,197],"drug":[15,53,115],"discovery":[16],"process.":[17],"Many":[18],"studies":[19,43],"have":[20],"introduced":[21],"computational":[22],"models":[23],"treat":[25],"DTI":[26,128],"as":[28],"a":[29,105],"regression":[30],"task,":[31],"which":[32,140],"directly":[33],"predict":[34,83,196],"binding":[36,85,198],"affinity":[37,86,199],"of":[38,60,88,114,127,171,200],"drug-target":[39,61,89],"pairs.":[40,90],"However,":[41],"existing":[42,138],"(i)":[44,98],"ignore":[45],"essential":[47],"correlations":[48,101],"between":[49,102],"atoms":[50,103],"when":[51],"encoding":[52],"compounds":[54],"and":[55,109,117,153,176,208],"(ii)":[56,110],"model":[57,77,93,111,194],"pairs":[62],"simply":[63],"by":[64,104,120,148,158],"concatenation.":[65],"Based":[66],"on":[67,130,168],"those":[68],"observations,":[69],"this":[71],"study,":[72],"we":[73,164,191],"propose":[74],"an":[75],"end-to-end":[76],"with":[78],"multiple":[79],"attention":[80,123,161],"blocks":[81],"scores":[87],"Our":[91],"proposed":[92],"offers":[94],"abilities":[96],"encode":[99],"relation-aware":[106,150],"self-attention":[107,151],"block":[108,152],"representations":[116,119],"target":[118],"multi-head":[122,160],"block.":[124,162],"Experimental":[125],"results":[126],"two":[131],"benchmark":[132],"datasets":[133],"show":[134],"our":[135,193],"approach":[136],"outperforms":[137],"methods,":[139],"are":[141],"benefit":[142],"from":[143],"correlation":[145],"information":[146,156],"encoded":[147],"extracted":[157],"Moreover,":[163],"conduct":[165],"experiments":[167],"effects":[170],"max":[172,181],"relative":[173,182],"length":[175,184],"find":[177],"out":[178],"best":[180],"value":[185],"$k":[186],"\\in":[187],"\\{3,":[188],"5\\}$.":[189],"Furthermore,":[190],"apply":[192],"Corona":[201],"Virus":[202],"Disease":[203],"2019":[204],"(COVID-19)-related":[205],"genome":[206],"sequences":[207],"$3137$":[209],"FDA-approved":[210],"drugs.":[211]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":24},{"year":2024,"cited_by_count":28},{"year":2023,"cited_by_count":29},{"year":2022,"cited_by_count":22},{"year":2021,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
