{"id":"https://openalex.org/W3146294934","doi":"https://doi.org/10.1093/bib/bbab070","title":"Parallel computing for genome sequence processing","display_name":"Parallel computing for genome sequence processing","publication_year":2021,"publication_date":"2021-02-11","ids":{"openalex":"https://openalex.org/W3146294934","doi":"https://doi.org/10.1093/bib/bbab070","mag":"3146294934","pmid":"https://pubmed.ncbi.nlm.nih.gov/33822883"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab070","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab070","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022432765","display_name":"You Zou","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"You Zou","raw_affiliation_strings":["Hunan Provincial Key Lab of Bioinformatics, School of Computer Science and Engineering at Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab of Bioinformatics, School of Computer Science and Engineering at Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005200491","display_name":"Yuejie Zhu","orcid":"https://orcid.org/0000-0002-6088-8991"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuejie Zhu","raw_affiliation_strings":["Hunan Provincial Key Lab of Bioinformatics, School of Computer Science and Engineering at Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab of Bioinformatics, School of Computer Science and Engineering at Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079316675","display_name":"Yaohang Li","orcid":"https://orcid.org/0000-0003-0178-1876"},"institutions":[{"id":"https://openalex.org/I81365321","display_name":"Old Dominion University","ror":"https://ror.org/04zjtrb98","country_code":"US","type":"education","lineage":["https://openalex.org/I81365321"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yaohang Li","raw_affiliation_strings":["computer science at Old Dominion University, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"computer science at Old Dominion University, USA","institution_ids":["https://openalex.org/I81365321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["College of Engineering and the Department of Computer Science at the University of Saskatchewan, Saskatoon, Canada"],"raw_orcid":"https://orcid.org/0000-0002-4593-9332","affiliations":[{"raw_affiliation_string":"College of Engineering and the Department of Computer Science at the University of Saskatchewan, Saskatoon, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["School of Computer Science and Engineering at Central South University, Changsha, Hunan, China"],"raw_orcid":"https://orcid.org/0000-0003-1516-0480","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering at Central South University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100438360"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.1846,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.77524126,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"22","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8016654253005981},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.6866799592971802},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.4574216902256012},{"id":"https://openalex.org/keywords/parallel-processing","display_name":"Parallel processing","score":0.4499286115169525},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4498908519744873},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.42764344811439514},{"id":"https://openalex.org/keywords/data-processing","display_name":"Data processing","score":0.4156327247619629},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.39392223954200745},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.355377197265625},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.30014267563819885},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2263125777244568},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.09687468409538269},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08038994669914246}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8016654253005981},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.6866799592971802},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.4574216902256012},{"id":"https://openalex.org/C106515295","wikidata":"https://www.wikidata.org/wiki/Q26806595","display_name":"Parallel processing","level":2,"score":0.4499286115169525},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4498908519744873},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.42764344811439514},{"id":"https://openalex.org/C138827492","wikidata":"https://www.wikidata.org/wiki/Q6661985","display_name":"Data processing","level":2,"score":0.4156327247619629},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.39392223954200745},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.355377197265625},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.30014267563819885},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2263125777244568},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.09687468409538269},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08038994669914246},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab070","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab070","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33822883","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33822883","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1527238211","display_name":null,"funder_award_id":"2018WK4001","funder_id":"https://openalex.org/F4320321471","funder_display_name":"Hunan Provincial Science and Technology Department"},{"id":"https://openalex.org/G2601088333","display_name":"\u57fa\u4e8e\u5f02\u8d28\u5c5e\u6027\u7f51\u7edc\u8868\u5f81\u5b66\u4e60\u7684\u8bc6\u522b\u764c\u75c7\u9a71\u52a8\u57fa\u56e0\u7b97\u6cd5\u7814\u7a76","funder_award_id":"61972185","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4043378463","display_name":null,"funder_award_id":"61832019","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G457519025","display_name":null,"funder_award_id":"19A316","funder_id":"https://openalex.org/F4320323040","funder_display_name":"Applied Scientific Research Fund"},{"id":"https://openalex.org/G530735527","display_name":null,"funder_award_id":"2018JJ2262","funder_id":"https://openalex.org/F4320310121","funder_display_name":"Natural Science Foundation of Jilin Province"},{"id":"https://openalex.org/G5922823018","display_name":null,"funder_award_id":"15CY007","funder_id":"https://openalex.org/F4320323040","funder_display_name":"Applied Scientific Research Fund"},{"id":"https://openalex.org/G6406114541","display_name":null,"funder_award_id":"CX2018B313","funder_id":"https://openalex.org/F4320326217","funder_display_name":"Hunan Provincial Innovation Foundation for Postgraduate"},{"id":"https://openalex.org/G8213310979","display_name":"\u591a\u500d\u4f53\u5355\u4f53\u578b\u4ece\u5934\u7ec4\u88c5\u7b97\u6cd5\u7814\u7a76","funder_award_id":"61772197","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320310121","display_name":"Natural Science Foundation of Jilin Province","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321471","display_name":"Hunan Provincial Science and Technology Department","ror":"https://ror.org/04qgr7x96"},{"id":"https://openalex.org/F4320323040","display_name":"Applied Scientific Research Fund","ror":"https://ror.org/00yp7b787"},{"id":"https://openalex.org/F4320326217","display_name":"Hunan Provincial Innovation Foundation for Postgraduate","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":120,"referenced_works":["https://openalex.org/W624975885","https://openalex.org/W651725268","https://openalex.org/W1017116093","https://openalex.org/W1548328233","https://openalex.org/W1591927788","https://openalex.org/W1644958229","https://openalex.org/W1904861952","https://openalex.org/W1968458420","https://openalex.org/W1984222112","https://openalex.org/W2006848099","https://openalex.org/W2025144591","https://openalex.org/W2037748100","https://openalex.org/W2056251063","https://openalex.org/W2061680337","https://openalex.org/W2071116416","https://openalex.org/W2072193858","https://openalex.org/W2072854577","https://openalex.org/W2081143975","https://openalex.org/W2081331709","https://openalex.org/W2094969361","https://openalex.org/W2095680943","https://openalex.org/W2097341408","https://openalex.org/W2103148772","https://openalex.org/W2103441770","https://openalex.org/W2103903744","https://openalex.org/W2104111114","https://openalex.org/W2107665875","https://openalex.org/W2107824361","https://openalex.org/W2112113834","https://openalex.org/W2117466692","https://openalex.org/W2119180969","https://openalex.org/W2119270998","https://openalex.org/W2121180999","https://openalex.org/W2121679244","https://openalex.org/W2121716038","https://openalex.org/W2121762798","https://openalex.org/W2124644390","https://openalex.org/W2124960286","https://openalex.org/W2127230663","https://openalex.org/W2131374955","https://openalex.org/W2136145671","https://openalex.org/W2139747296","https://openalex.org/W2139760555","https://openalex.org/W2141978878","https://openalex.org/W2143124024","https://openalex.org/W2149414426","https://openalex.org/W2159670728","https://openalex.org/W2162758337","https://openalex.org/W2166425625","https://openalex.org/W2169456326","https://openalex.org/W2170551349","https://openalex.org/W2265889397","https://openalex.org/W2297835331","https://openalex.org/W2384495648","https://openalex.org/W2398924165","https://openalex.org/W2466930524","https://openalex.org/W2542459869","https://openalex.org/W2560228154","https://openalex.org/W2586618089","https://openalex.org/W2596996588","https://openalex.org/W2601152038","https://openalex.org/W2623372292","https://openalex.org/W2706430963","https://openalex.org/W2731064643","https://openalex.org/W2745824628","https://openalex.org/W2784788330","https://openalex.org/W2785694006","https://openalex.org/W2789843538","https://openalex.org/W2794027823","https://openalex.org/W2796360334","https://openalex.org/W2799394118","https://openalex.org/W2804749766","https://openalex.org/W2851278624","https://openalex.org/W2885277278","https://openalex.org/W2886161096","https://openalex.org/W2886729117","https://openalex.org/W2889664156","https://openalex.org/W2901745818","https://openalex.org/W2904043656","https://openalex.org/W2912857220","https://openalex.org/W2913865270","https://openalex.org/W2914563499","https://openalex.org/W2919665556","https://openalex.org/W2919717584","https://openalex.org/W2923143097","https://openalex.org/W2943591933","https://openalex.org/W2946169500","https://openalex.org/W2950686248","https://openalex.org/W2951912016","https://openalex.org/W2952726084","https://openalex.org/W2972528761","https://openalex.org/W2977801045","https://openalex.org/W2998804949","https://openalex.org/W2999645641","https://openalex.org/W3012600779","https://openalex.org/W3022923721","https://openalex.org/W3100632412","https://openalex.org/W4210348154","https://openalex.org/W4243745414","https://openalex.org/W4247053599","https://openalex.org/W4247176905","https://openalex.org/W4248073216","https://openalex.org/W4248652878","https://openalex.org/W4256469312","https://openalex.org/W4293398578","https://openalex.org/W4394655901","https://openalex.org/W4394666350","https://openalex.org/W6626400616","https://openalex.org/W6635357586","https://openalex.org/W6674561012","https://openalex.org/W6676148250","https://openalex.org/W6676423385","https://openalex.org/W6697360534","https://openalex.org/W6720281215","https://openalex.org/W6733172388","https://openalex.org/W6740813679","https://openalex.org/W6753969399","https://openalex.org/W6754099598","https://openalex.org/W6760495083","https://openalex.org/W6762166224"],"related_works":["https://openalex.org/W1970073092","https://openalex.org/W2535205838","https://openalex.org/W1634769474","https://openalex.org/W2383074217","https://openalex.org/W2340056135","https://openalex.org/W2157926610","https://openalex.org/W209196921","https://openalex.org/W2971894545","https://openalex.org/W2323671895","https://openalex.org/W4297930914"],"abstract_inverted_index":{"The":[0,53,158],"rapid":[1],"increase":[2],"of":[3,55,83,131,142,151,161,184],"genome":[4,66,104,113,120],"data":[5,16,25,45],"brought":[6],"by":[7,23],"gene":[8],"sequencing":[9],"technologies":[10,64],"poses":[11],"a":[12,140,167],"massive":[13],"challenge":[14],"to":[15,59,77,171],"processing.":[17,68],"To":[18],"solve":[19],"the":[20,100,149,179],"problems":[21],"caused":[22],"enormous":[24],"and":[26,35,50,81,92,123,126,138,155,164,181],"complex":[27],"computing":[28,72,102,156,174,186],"requirements,":[29],"researchers":[30,170],"have":[31],"proposed":[32],"many":[33],"methods":[34],"tools":[36,143],"which":[37,84],"can":[38],"be":[39],"divided":[40],"into":[41,87],"three":[42,90],"types:":[43],"big":[44],"storage,":[46],"efficient":[47],"algorithm":[48],"design":[49],"parallel":[51,62,71,101,185],"computing.":[52],"purpose":[54],"this":[56],"review":[57],"is":[58,85,93,107,135],"investigate":[60],"popular":[61],"programming":[63,159],"for":[65,103,169],"sequence":[67,105,114,121],"Three":[69],"common":[70,111],"models":[73],"are":[74,146],"introduced":[75],"according":[76],"their":[78,97],"hardware":[79,153,163],"architectures,":[80],"each":[82,129,162],"classified":[86],"two":[88],"or":[89,144],"types":[91],"further":[94],"analyzed":[95],"with":[96,109],"features.":[98],"Then,":[99],"processing":[106],"discussed":[108],"four":[110],"applications:":[112],"alignment,":[115],"single":[116],"nucleotide":[117],"polymorphism":[118],"calling,":[119],"preprocessing,":[122],"pattern":[124],"detection":[125],"searching.":[127],"For":[128],"kind":[130],"application,":[132],"its":[133],"background":[134],"firstly":[136],"introduced,":[137],"then":[139],"list":[141],"algorithms":[145],"summarized":[147],"in":[148],"aspects":[150],"principle,":[152],"platform":[154],"efficiency.":[157],"model":[160],"application":[165],"provides":[166],"reference":[168],"choose":[172],"high-performance":[173],"tools.":[175],"Finally,":[176],"we":[177],"discuss":[178],"limitations":[180],"future":[182],"trends":[183],"technologies.":[187]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-07-25T15:57:00.446498","created_date":"2025-10-10T00:00:00"}
