{"id":"https://openalex.org/W3145990216","doi":"https://doi.org/10.1093/bib/bbab041","title":"ATSE: a peptide toxicity predictor by exploiting structural and evolutionary information based on graph neural network and attention mechanism","display_name":"ATSE: a peptide toxicity predictor by exploiting structural and evolutionary information based on graph neural network and attention mechanism","publication_year":2021,"publication_date":"2021-01-29","ids":{"openalex":"https://openalex.org/W3145990216","doi":"https://doi.org/10.1093/bib/bbab041","mag":"3145990216","pmid":"https://pubmed.ncbi.nlm.nih.gov/33822870"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab041","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab041","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110758704","display_name":"Lesong Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN","JP"],"is_corresponding":true,"raw_author_name":"Lesong Wei","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba, Tsukuba, Japan, 3058577","School of Software, Shandong University, Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba, Tsukuba, Japan, 3058577","institution_ids":["https://openalex.org/I146399215"]},{"raw_affiliation_string":"School of Software, Shandong University, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110758704","display_name":"Lesong Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN","JP"],"is_corresponding":false,"raw_author_name":"Lesong Wei","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba, Tsukuba, Japan, 3058577","School of Software, Shandong University, Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba, Tsukuba, Japan, 3058577","institution_ids":["https://openalex.org/I146399215"]},{"raw_affiliation_string":"School of Software, Shandong University, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063256241","display_name":"Xiucai Ye","orcid":"https://orcid.org/0000-0002-5547-3919"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Xiucai Ye","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba, Tsukuba, Japan, 3058577"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba, Tsukuba, Japan, 3058577","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008578775","display_name":"Yuyang Xue","orcid":"https://orcid.org/0000-0002-2281-9418"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuyang Xue","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba, Tsukuba, Japan, 3058577"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba, Tsukuba, Japan, 3058577","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038336830","display_name":"Tetsuya Sakurai","orcid":"https://orcid.org/0000-0002-5789-7547"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN","JP"],"is_corresponding":false,"raw_author_name":"Tetsuya Sakurai","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba, Tsukuba, Japan, 3058577","School of Software, Shandong University, Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba, Tsukuba, Japan, 3058577","institution_ids":["https://openalex.org/I146399215"]},{"raw_affiliation_string":"School of Software, Shandong University, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033232360","display_name":"Leyi Wei","orcid":"https://orcid.org/0000-0003-1444-190X"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN","JP"],"is_corresponding":true,"raw_author_name":"Leyi Wei","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba, Tsukuba, Japan, 3058577","School of Software, Shandong University, Jinan, China"],"raw_orcid":"https://orcid.org/0000-0003-1444-190X","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba, Tsukuba, Japan, 3058577","institution_ids":["https://openalex.org/I146399215"]},{"raw_affiliation_string":"School of Software, Shandong University, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033232360","display_name":"Leyi Wei","orcid":"https://orcid.org/0000-0003-1444-190X"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN","JP"],"is_corresponding":false,"raw_author_name":"Leyi Wei","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba, Tsukuba, Japan, 3058577","School of Software, Shandong University, Jinan, China"],"raw_orcid":"https://orcid.org/0000-0003-1444-190X","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba, Tsukuba, Japan, 3058577","institution_ids":["https://openalex.org/I146399215"]},{"raw_affiliation_string":"School of Software, Shandong University, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5033232360","https://openalex.org/A5063256241","https://openalex.org/A5110758704"],"corresponding_institution_ids":["https://openalex.org/I146399215","https://openalex.org/I154099455"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":6.8095,"has_fulltext":false,"cited_by_count":128,"citation_normalized_percentile":{"value":0.98146876,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"22","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.5623000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.5623000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.17730000615119934,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.1023000031709671,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.7608877420425415},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5520006418228149},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5079792141914368},{"id":"https://openalex.org/keywords/toxicity","display_name":"Toxicity","score":0.4624306261539459},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43967732787132263},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.4385780692100525},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.42723989486694336},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3790726363658905},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.33182835578918457},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21610701084136963},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.15930858254432678},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.13865840435028076}],"concepts":[{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.7608877420425415},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5520006418228149},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5079792141914368},{"id":"https://openalex.org/C29730261","wikidata":"https://www.wikidata.org/wiki/Q274160","display_name":"Toxicity","level":2,"score":0.4624306261539459},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43967732787132263},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.4385780692100525},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.42723989486694336},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3790726363658905},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.33182835578918457},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21610701084136963},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.15930858254432678},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.13865840435028076},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab041","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab041","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33822870","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33822870","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.7099999785423279}],"awards":[{"id":"https://openalex.org/G2174740613","display_name":"Development of eigenvalue analysis methods using a quadrature-type eigensolver with nonlinear transformations","funder_award_id":"18H03250","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2833016204","display_name":"\u57fa\u4e8e\u4eba\u5de5\u667a\u80fd\u7684\u591a\u80bd\u836f\u7269\u8bc6\u522b\u4e0e\u5206\u6790\u65b9\u6cd5\u7814\u7a76","funder_award_id":"62071278","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7047309604","display_name":"\u4e2a\u6027\u5316\u6297\u764c\u836f\u7269\u7684\u667a\u80fd\u9009\u62e9\u65b9\u6cd5\u7814\u7a76","funder_award_id":"62072329","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321034","display_name":"New Energy and Industrial Technology Development Organization","ror":"https://ror.org/0055k7a87"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":76,"referenced_works":["https://openalex.org/W966179174","https://openalex.org/W1507045809","https://openalex.org/W1580407891","https://openalex.org/W1745503682","https://openalex.org/W1860382351","https://openalex.org/W1978859117","https://openalex.org/W1990075477","https://openalex.org/W1992450378","https://openalex.org/W2006759360","https://openalex.org/W2014274241","https://openalex.org/W2019037081","https://openalex.org/W2029158842","https://openalex.org/W2050000500","https://openalex.org/W2064675550","https://openalex.org/W2102786297","https://openalex.org/W2119597740","https://openalex.org/W2121597792","https://openalex.org/W2132292391","https://openalex.org/W2143210482","https://openalex.org/W2145957695","https://openalex.org/W2154139219","https://openalex.org/W2156125289","https://openalex.org/W2158714788","https://openalex.org/W2163545771","https://openalex.org/W2165551001","https://openalex.org/W2187089797","https://openalex.org/W2315669465","https://openalex.org/W2342032814","https://openalex.org/W2414031100","https://openalex.org/W2508362099","https://openalex.org/W2526763554","https://openalex.org/W2584676873","https://openalex.org/W2592214057","https://openalex.org/W2598922467","https://openalex.org/W2609814551","https://openalex.org/W2612690371","https://openalex.org/W2618530766","https://openalex.org/W2761495217","https://openalex.org/W2766725728","https://openalex.org/W2790631817","https://openalex.org/W2805110914","https://openalex.org/W2860192827","https://openalex.org/W2896636431","https://openalex.org/W2903705089","https://openalex.org/W2904762451","https://openalex.org/W2914272550","https://openalex.org/W2923490814","https://openalex.org/W2945027804","https://openalex.org/W2945669687","https://openalex.org/W2946099214","https://openalex.org/W2968781851","https://openalex.org/W2971769670","https://openalex.org/W2979866130","https://openalex.org/W2980699342","https://openalex.org/W2982608875","https://openalex.org/W2984274952","https://openalex.org/W2989977616","https://openalex.org/W2999044305","https://openalex.org/W3003038853","https://openalex.org/W3013552211","https://openalex.org/W3016489761","https://openalex.org/W3020930839","https://openalex.org/W3046893055","https://openalex.org/W3081061859","https://openalex.org/W3081135305","https://openalex.org/W3084375074","https://openalex.org/W3090580446","https://openalex.org/W3093729849","https://openalex.org/W3095716988","https://openalex.org/W4242753776","https://openalex.org/W6625403434","https://openalex.org/W6630276025","https://openalex.org/W6704083431","https://openalex.org/W6725105739","https://openalex.org/W6756936392","https://openalex.org/W6766492837"],"related_works":["https://openalex.org/W2382997850","https://openalex.org/W2390968135","https://openalex.org/W2382213751","https://openalex.org/W2351750670","https://openalex.org/W1597848696","https://openalex.org/W2354715126","https://openalex.org/W2388563748","https://openalex.org/W2375179084","https://openalex.org/W2366646518","https://openalex.org/W2370906336"],"abstract_inverted_index":{"MOTIVATION:":[0],"Peptides":[1],"have":[2],"recently":[3],"emerged":[4],"as":[5,124],"promising":[6],"therapeutic":[7],"agents":[8],"against":[9],"various":[10],"diseases.":[11],"For":[12],"both":[13],"research":[14],"and":[15,57,65,87,104,116,175,210],"safety":[16],"regulation":[17],"purposes,":[18],"it":[19,70,205],"is":[20,154,197],"of":[21,34,40,72,215],"high":[22],"importance":[23],"to":[24,28,84,96,112,156],"develop":[25],"computational":[26,189],"methods":[27],"accurately":[29],"predict":[30],"the":[31,37,114,132,140,157,162,166,193],"potential":[32],"toxicity":[33,52],"peptides":[35],"within":[36],"vast":[38],"number":[39],"candidate":[41],"peptides.":[42],"RESULTS:":[43],"In":[44],"this":[45],"study,":[46],"we":[47,184],"proposed":[48,141,194],"ATSE,":[49,195],"a":[50,76,91,122,186,208],"peptide":[51,82,123],"predictor":[53],"by":[54,170],"exploiting":[55],"structural":[56,102,152],"evolutionary":[58,88,105,158],"information":[59,103,153,179],"based":[60],"on":[61],"graph":[62,101],"neural":[63],"networks":[64],"attention":[66,109,133],"mechanism.":[67],"More":[68],"specifically,":[69],"consists":[71],"four":[73],"modules:":[74],"(i)":[75],"sequence":[77],"processing":[78],"module":[79,94,110,120],"for":[80,180,213],"converting":[81],"sequences":[83],"molecular":[85],"graphs":[86],"profiles,":[89],"(ii)":[90],"feature":[92],"extraction":[93],"designed":[95],"learn":[97],"discriminative":[98],"features":[99,115,130,168],"from":[100,131],"information,":[106,159],"(iii)":[107],"an":[108,118],"employed":[111],"optimize":[113],"(iv)":[117],"output":[119],"determining":[121],"toxic":[125],"or":[126],"non-toxic,":[127],"using":[128],"optimized":[129],"module.":[134],"CONCLUSION:":[135],"Comparative":[136],"studies":[137],"demonstrate":[138],"that":[139,151,191,204],"ATSE":[142,171],"significantly":[143],"outperforms":[144],"all":[145],"other":[146],"competing":[147],"methods.":[148],"We":[149,202],"found":[150],"complementary":[155],"effectively":[160],"improving":[161],"predictive":[163],"performance.":[164],"Importantly,":[165],"data-driven":[167],"learned":[169],"can":[172,206],"be":[173,207],"interpreted":[174],"visualized,":[176],"providing":[177],"additional":[178],"further":[181],"analysis.":[182],"Moreover,":[183],"present":[185],"user-friendly":[187],"online":[188],"platform":[190],"implements":[192],"which":[196],"now":[198],"available":[199],"at":[200],"http://server.malab.cn/ATSE.":[201],"expect":[203],"powerful":[209],"useful":[211],"tool":[212],"researchers":[214],"interest.":[216]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":26},{"year":2024,"cited_by_count":48},{"year":2023,"cited_by_count":25},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":3}],"updated_date":"2026-07-18T07:39:51.176621","created_date":"2025-10-10T00:00:00"}
