{"id":"https://openalex.org/W3129402903","doi":"https://doi.org/10.1093/bib/bbab033","title":"A comprehensive review of scaffolding methods in genome assembly","display_name":"A comprehensive review of scaffolding methods in genome assembly","publication_year":2021,"publication_date":"2021-01-23","ids":{"openalex":"https://openalex.org/W3129402903","doi":"https://doi.org/10.1093/bib/bbab033","mag":"3129402903","pmid":"https://pubmed.ncbi.nlm.nih.gov/33634311"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab033","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab033","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100422484","display_name":"Junwei Luo","orcid":"https://orcid.org/0000-0001-6841-9893"},"institutions":[{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junwei Luo","raw_affiliation_strings":["College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China","institution_ids":["https://openalex.org/I4210166499"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109109285","display_name":"Yawei Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yawei Wei","raw_affiliation_strings":["College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China","institution_ids":["https://openalex.org/I4210166499"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024836640","display_name":"Mengna Lyu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengna Lyu","raw_affiliation_strings":["College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China","institution_ids":["https://openalex.org/I4210166499"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025708683","display_name":"Zhengjiang Wu","orcid":"https://orcid.org/0000-0002-5965-4661"},"institutions":[{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengjiang Wu","raw_affiliation_strings":["College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China","institution_ids":["https://openalex.org/I4210166499"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100324637","display_name":"Xiaoyan Liu","orcid":"https://orcid.org/0000-0002-1732-5923"},"institutions":[{"id":"https://openalex.org/I4210166499","display_name":"Henan Polytechnic University","ror":"https://ror.org/05vr1c885","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210166499"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyan Liu","raw_affiliation_strings":["College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China","institution_ids":["https://openalex.org/I4210166499"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012174743","display_name":"Huimin Luo","orcid":"https://orcid.org/0000-0002-5066-5372"},"institutions":[{"id":"https://openalex.org/I173899330","display_name":"Henan University","ror":"https://ror.org/003xyzq10","country_code":"CN","type":"education","lineage":["https://openalex.org/I173899330"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huimin Luo","raw_affiliation_strings":["School of Computer and Information Engineering, Henan University, Kaifeng, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Information Engineering, Henan University, Kaifeng, China","institution_ids":["https://openalex.org/I173899330"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101773794","display_name":"Chaokun Yan","orcid":"https://orcid.org/0000-0002-6246-7242"},"institutions":[{"id":"https://openalex.org/I173899330","display_name":"Henan University","ror":"https://ror.org/003xyzq10","country_code":"CN","type":"education","lineage":["https://openalex.org/I173899330"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chaokun Yan","raw_affiliation_strings":["School of Computer and Information Engineering, Henan University, Kaifeng, China"],"raw_orcid":"https://orcid.org/0000-0002-6246-7242","affiliations":[{"raw_affiliation_string":"School of Computer and Information Engineering, Henan University, Kaifeng, China","institution_ids":["https://openalex.org/I173899330"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5101773794"],"corresponding_institution_ids":["https://openalex.org/I173899330"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.7753,"has_fulltext":false,"cited_by_count":55,"citation_normalized_percentile":{"value":0.94924131,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"22","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scaffold","display_name":"Scaffold","score":0.5832613110542297},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5706117153167725},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5396435856819153},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4665638506412506},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3024546802043915},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16575118899345398},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11386334896087646},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08526244759559631}],"concepts":[{"id":"https://openalex.org/C89429830","wikidata":"https://www.wikidata.org/wiki/Q735710","display_name":"Scaffold","level":2,"score":0.5832613110542297},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5706117153167725},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5396435856819153},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4665638506412506},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3024546802043915},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16575118899345398},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11386334896087646},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08526244759559631}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab033","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab033","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33634311","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33634311","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1187543282","display_name":null,"funder_award_id":"61772557","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4890233407","display_name":null,"funder_award_id":"61602156","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5152608506","display_name":null,"funder_award_id":"61802113","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6195368553","display_name":null,"funder_award_id":"11601129","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6667854063","display_name":null,"funder_award_id":"192102210118","funder_id":"https://openalex.org/F4320327051","funder_display_name":"Science and Technology Department of Henan Province"},{"id":"https://openalex.org/G78415896","display_name":"\u57fa\u4e8e\u957f\u77ed\u8bfb\u6570\u7ed3\u5408\u7684\u7ed3\u6784\u53d8\u5f02\u68c0\u6d4b\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61972134","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320327051","display_name":"Science and Technology Department of Henan Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":174,"referenced_works":["https://openalex.org/W576031931","https://openalex.org/W1489349053","https://openalex.org/W1513515886","https://openalex.org/W1793987388","https://openalex.org/W1797898354","https://openalex.org/W1903088142","https://openalex.org/W1970995855","https://openalex.org/W1974640383","https://openalex.org/W1975398519","https://openalex.org/W2002438422","https://openalex.org/W2008826985","https://openalex.org/W2011140928","https://openalex.org/W2014286596","https://openalex.org/W2020006618","https://openalex.org/W2063287758","https://openalex.org/W2076163156","https://openalex.org/W2078223647","https://openalex.org/W2090037139","https://openalex.org/W2094270919","https://openalex.org/W2094335760","https://openalex.org/W2096375646","https://openalex.org/W2103441770","https://openalex.org/W2104549677","https://openalex.org/W2107282968","https://openalex.org/W2107772251","https://openalex.org/W2108640362","https://openalex.org/W2111775962","https://openalex.org/W2111829451","https://openalex.org/W2113079985","https://openalex.org/W2114795390","https://openalex.org/W2116744776","https://openalex.org/W2118286674","https://openalex.org/W2118970626","https://openalex.org/W2121832832","https://openalex.org/W2124827052","https://openalex.org/W2127768708","https://openalex.org/W2128263817","https://openalex.org/W2129744420","https://openalex.org/W2129933858","https://openalex.org/W2131852975","https://openalex.org/W2132341951","https://openalex.org/W2136145671","https://openalex.org/W2136303928","https://openalex.org/W2137662380","https://openalex.org/W2137759177","https://openalex.org/W2140059069","https://openalex.org/W2141262285","https://openalex.org/W2142027180","https://openalex.org/W2142589194","https://openalex.org/W2144958038","https://openalex.org/W2146842681","https://openalex.org/W2150904790","https://openalex.org/W2153689534","https://openalex.org/W2155064619","https://openalex.org/W2156406701","https://openalex.org/W2165336044","https://openalex.org/W2165795500","https://openalex.org/W2166825456","https://openalex.org/W2167757586","https://openalex.org/W2169832071","https://openalex.org/W2170525352","https://openalex.org/W2170551349","https://openalex.org/W2171467729","https://openalex.org/W2171531867","https://openalex.org/W2178309410","https://openalex.org/W2194172909","https://openalex.org/W2211504288","https://openalex.org/W2259938310","https://openalex.org/W2264578395","https://openalex.org/W2286667211","https://openalex.org/W2293354914","https://openalex.org/W2342701733","https://openalex.org/W2344657883","https://openalex.org/W2383775397","https://openalex.org/W2396077153","https://openalex.org/W2397469828","https://openalex.org/W2428569935","https://openalex.org/W2462117273","https://openalex.org/W2520464109","https://openalex.org/W2539441058","https://openalex.org/W2550586733","https://openalex.org/W2554441009","https://openalex.org/W2559429800","https://openalex.org/W2560383108","https://openalex.org/W2564898509","https://openalex.org/W2578045105","https://openalex.org/W2607669908","https://openalex.org/W2610924493","https://openalex.org/W2623168030","https://openalex.org/W2746799875","https://openalex.org/W2753019977","https://openalex.org/W2754877225","https://openalex.org/W2767132092","https://openalex.org/W2772782734","https://openalex.org/W2782397389","https://openalex.org/W2788228074","https://openalex.org/W2789843538","https://openalex.org/W2794879929","https://openalex.org/W2799822380","https://openalex.org/W2804022339","https://openalex.org/W2804059406","https://openalex.org/W2807435834","https://openalex.org/W2809646241","https://openalex.org/W2883056464","https://openalex.org/W2885591122","https://openalex.org/W2887480761","https://openalex.org/W2890720538","https://openalex.org/W2897053626","https://openalex.org/W2897603144","https://openalex.org/W2900539462","https://openalex.org/W2905576637","https://openalex.org/W2906461738","https://openalex.org/W2909852840","https://openalex.org/W2910081202","https://openalex.org/W2913839917","https://openalex.org/W2926003520","https://openalex.org/W2941052365","https://openalex.org/W2941874147","https://openalex.org/W2948487375","https://openalex.org/W2949978892","https://openalex.org/W2951265437","https://openalex.org/W2951640687","https://openalex.org/W2952020649","https://openalex.org/W2952386282","https://openalex.org/W2952474440","https://openalex.org/W2953100295","https://openalex.org/W2953311464","https://openalex.org/W2959632638","https://openalex.org/W2963010081","https://openalex.org/W2963631305","https://openalex.org/W2968499116","https://openalex.org/W2969330652","https://openalex.org/W2971645752","https://openalex.org/W2979931451","https://openalex.org/W2982706470","https://openalex.org/W2989193128","https://openalex.org/W2989362090","https://openalex.org/W2990059271","https://openalex.org/W2992222567","https://openalex.org/W2994865123","https://openalex.org/W3006159743","https://openalex.org/W3007223261","https://openalex.org/W3009972029","https://openalex.org/W3015155064","https://openalex.org/W3022801335","https://openalex.org/W3023256507","https://openalex.org/W3023525892","https://openalex.org/W3027512039","https://openalex.org/W3029256690","https://openalex.org/W3034739500","https://openalex.org/W3036856417","https://openalex.org/W3044087532","https://openalex.org/W3044841809","https://openalex.org/W3045874575","https://openalex.org/W3047921295","https://openalex.org/W3092045521","https://openalex.org/W3098495126","https://openalex.org/W3099661149","https://openalex.org/W3102786052","https://openalex.org/W3115745540","https://openalex.org/W3117504517","https://openalex.org/W3139503429","https://openalex.org/W6726900922","https://openalex.org/W6728842767","https://openalex.org/W6731040303","https://openalex.org/W6746810436","https://openalex.org/W6751889925","https://openalex.org/W6757771271","https://openalex.org/W6758213183","https://openalex.org/W6770028232","https://openalex.org/W6774124371","https://openalex.org/W6775062811","https://openalex.org/W6781370224","https://openalex.org/W7058403925"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189"],"abstract_inverted_index":{"In":[0,111],"the":[1,22,31,41,60,74,85,92,117,121,130,150,157],"field":[2],"of":[3,24,63,69,88,94,107,128,152,159],"genome":[4],"assembly,":[5],"scaffolding":[6,89,95,109,135,154,161],"methods":[7,28,96,131,136,155,162],"make":[8],"it":[9],"possible":[10],"to":[11,39,48,103],"obtain":[12],"a":[13],"more":[14],"complete":[15],"and":[16,35,43,47,99,140,156],"contiguous":[17],"reference":[18],"genome,":[19],"which":[20,52,81,133],"is":[21],"cornerstone":[23],"genomic":[25,56],"research.":[26],"Scaffolding":[27],"typically":[29],"utilize":[30],"alignments":[32],"between":[33],"contigs":[34,46],"sequencing":[36,65],"data":[37],"(reads)":[38],"determine":[40],"orientation":[42],"order":[44],"among":[45,125],"produce":[49],"longer":[50],"scaffolds,":[51],"are":[53],"helpful":[54],"for":[55,163],"downstream":[57],"analysis.":[58],"With":[59],"rapid":[61],"development":[62],"high-throughput":[64],"technologies,":[66],"diverse":[67],"types":[68],"reads":[70],"have":[71,82],"emerged":[72],"over":[73],"past":[75],"decade,":[76],"especially":[77],"in":[78,119,123],"long-range":[79],"sequencing,":[80],"greatly":[83],"enhanced":[84],"assembly":[86],"quality":[87],"methods.":[90,110],"As":[91],"number":[93],"increases,":[97],"biology":[98],"bioinformatics":[100],"researchers":[101],"need":[102],"perform":[104],"in-depth":[105],"analyses":[106],"state-of-the-art":[108],"this":[112,146],"article,":[113],"we":[114],"focus":[115],"on":[116],"difficulties":[118],"scaffolding,":[120],"differences":[122],"characteristics":[124],"various":[126],"kinds":[127],"reads,":[129],"by":[132],"current":[134],"address":[137],"these":[138],"difficulties,":[139],"future":[141],"research":[142],"opportunities.":[143],"We":[144],"hope":[145],"work":[147],"will":[148],"benefit":[149],"design":[151],"new":[153],"selection":[158],"appropriate":[160],"specific":[164],"biological":[165],"studies.":[166]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":25},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
