{"id":"https://openalex.org/W3136351832","doi":"https://doi.org/10.1093/bib/bbab030","title":"Genome-resolved metagenomics using environmental and clinical samples","display_name":"Genome-resolved metagenomics using environmental and clinical samples","publication_year":2021,"publication_date":"2021-01-21","ids":{"openalex":"https://openalex.org/W3136351832","doi":"https://doi.org/10.1093/bib/bbab030","mag":"3136351832","pmid":"https://pubmed.ncbi.nlm.nih.gov/33758906"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab030","pdf_url":"https://academic.oup.com/bib/article-pdf/22/5/bbab030/40260084/bbab030.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/22/5/bbab030/40260084/bbab030.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076103542","display_name":"Masood Ur Rehman Kayani","orcid":"https://orcid.org/0000-0002-7425-1756"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210135742","display_name":"Shanghai First People's Hospital","ror":"https://ror.org/04a46mh28","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210135742"]},{"id":"https://openalex.org/I4210147369","display_name":"Shanghai Institute of Hematology","ror":"https://ror.org/03fz4ce66","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210147369"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Masood ur Rehman Kayani","raw_affiliation_strings":["Center for Microbiota and Immunological Diseases, Shanghai General Hospital, Shanghai Institute of Immunology, Shanghai Jiao Tong University, School of Medicine, Shanghai 2,000,025, China"],"raw_orcid":"https://orcid.org/0000-0002-7425-1756","affiliations":[{"raw_affiliation_string":"Center for Microbiota and Immunological Diseases, Shanghai General Hospital, Shanghai Institute of Immunology, Shanghai Jiao Tong University, School of Medicine, Shanghai 2,000,025, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210135742","https://openalex.org/I4210147369"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073583133","display_name":"Wanqiu Huang","orcid":"https://orcid.org/0000-0003-3354-1148"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wanqiu Huang","raw_affiliation_strings":["Shanghai Institute of Immunology, Shanghai Jiao Tong University, School of Medicine, Shanghai 200,000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Institute of Immunology, Shanghai Jiao Tong University, School of Medicine, Shanghai 200,000, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100766731","display_name":"Ru Feng","orcid":"https://orcid.org/0000-0002-1003-0479"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210135742","display_name":"Shanghai First People's Hospital","ror":"https://ror.org/04a46mh28","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210135742"]},{"id":"https://openalex.org/I4210147369","display_name":"Shanghai Institute of Hematology","ror":"https://ror.org/03fz4ce66","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210147369"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ru Feng","raw_affiliation_strings":["Center for Microbiota and Immunological Diseases, Shanghai General Hospital, Shanghai Institute of Immunology, Shanghai Jiao Tong University, School of Medicine, Shanghai 2,000,025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbiota and Immunological Diseases, Shanghai General Hospital, Shanghai Institute of Immunology, Shanghai Jiao Tong University, School of Medicine, Shanghai 2,000,025, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210135742","https://openalex.org/I4210147369"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100333580","display_name":"Lei Chen","orcid":"https://orcid.org/0000-0003-3989-9239"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210135742","display_name":"Shanghai First People's Hospital","ror":"https://ror.org/04a46mh28","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210135742"]},{"id":"https://openalex.org/I4210147369","display_name":"Shanghai Institute of Hematology","ror":"https://ror.org/03fz4ce66","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210147369"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lei Chen","raw_affiliation_strings":["Center for Microbiota and Immunological Diseases, Shanghai General Hospital, Shanghai Institute of Immunology, Shanghai Jiao Tong University, School of Medicine, Shanghai 2,000,025, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbiota and Immunological Diseases, Shanghai General Hospital, Shanghai Institute of Immunology, Shanghai Jiao Tong University, School of Medicine, Shanghai 2,000,025, China","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210135742","https://openalex.org/I4210147369"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100333580"],"corresponding_institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210135742","https://openalex.org/I4210147369"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.7024,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.84582277,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"22","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.9601205587387085},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.761741578578949},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6254264712333679},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.47283583879470825},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.4689618647098541},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4544733464717865},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.4192875325679779},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.398093581199646},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17744392156600952},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1665915846824646},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10504552721977234}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.9601205587387085},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.761741578578949},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6254264712333679},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.47283583879470825},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.4689618647098541},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4544733464717865},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.4192875325679779},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.398093581199646},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17744392156600952},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1665915846824646},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10504552721977234},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D005243","descriptor_name":"Feces","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D005243","descriptor_name":"Feces","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D005243","descriptor_name":"Feces","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D005835","descriptor_name":"Genitalia","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D005835","descriptor_name":"Genitalia","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D005835","descriptor_name":"Genitalia","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014871","descriptor_name":"Water Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014871","descriptor_name":"Water Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014871","descriptor_name":"Water Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbab030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab030","pdf_url":"https://academic.oup.com/bib/article-pdf/22/5/bbab030/40260084/bbab030.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33758906","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33758906","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8425419","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8425419","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbab030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab030","pdf_url":"https://academic.oup.com/bib/article-pdf/22/5/bbab030/40260084/bbab030.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":250,"referenced_works":["https://openalex.org/W1551460710","https://openalex.org/W1562379206","https://openalex.org/W1584790813","https://openalex.org/W1648007346","https://openalex.org/W1661708608","https://openalex.org/W1677191027","https://openalex.org/W1760213857","https://openalex.org/W1834562783","https://openalex.org/W1841864539","https://openalex.org/W1878521557","https://openalex.org/W1882572081","https://openalex.org/W1898263885","https://openalex.org/W1958058086","https://openalex.org/W1966822396","https://openalex.org/W1968458420","https://openalex.org/W1969346416","https://openalex.org/W1971072534","https://openalex.org/W1971921789","https://openalex.org/W1976325156","https://openalex.org/W1979006961","https://openalex.org/W1979724564","https://openalex.org/W1980070637","https://openalex.org/W1980606681","https://openalex.org/W1983426138","https://openalex.org/W1986608492","https://openalex.org/W1989895641","https://openalex.org/W1996053875","https://openalex.org/W1997673861","https://openalex.org/W2001561488","https://openalex.org/W2002868103","https://openalex.org/W2004548026","https://openalex.org/W2007703905","https://openalex.org/W2010002522","https://openalex.org/W2020398205","https://openalex.org/W2027496182","https://openalex.org/W2027951608","https://openalex.org/W2032870665","https://openalex.org/W2033167804","https://openalex.org/W2036897871","https://openalex.org/W2037532428","https://openalex.org/W2041561663","https://openalex.org/W2045449780","https://openalex.org/W2045843097","https://openalex.org/W2046137036","https://openalex.org/W2047242127","https://openalex.org/W2047927409","https://openalex.org/W2055229098","https://openalex.org/W2055503200","https://openalex.org/W2057118148","https://openalex.org/W2057862530","https://openalex.org/W2070868107","https://openalex.org/W2072991715","https://openalex.org/W2076048958","https://openalex.org/W2078447778","https://openalex.org/W2078969200","https://openalex.org/W2080347313","https://openalex.org/W2080958324","https://openalex.org/W2085631282","https://openalex.org/W2087464200","https://openalex.org/W2089859322","https://openalex.org/W2094201044","https://openalex.org/W2096093282","https://openalex.org/W2096143955","https://openalex.org/W2098531465","https://openalex.org/W2100745860","https://openalex.org/W2100896078","https://openalex.org/W2103901746","https://openalex.org/W2109219199","https://openalex.org/W2109848222","https://openalex.org/W2110016465","https://openalex.org/W2110233077","https://openalex.org/W2113679889","https://openalex.org/W2113915152","https://openalex.org/W2114034054","https://openalex.org/W2116913446","https://openalex.org/W2117608012","https://openalex.org/W2118522801","https://openalex.org/W2119098444","https://openalex.org/W2120799151","https://openalex.org/W2120902911","https://openalex.org/W2121180999","https://openalex.org/W2121291798","https://openalex.org/W2121413434","https://openalex.org/W2124637227","https://openalex.org/W2126809954","https://openalex.org/W2126883736","https://openalex.org/W2127175247","https://openalex.org/W2127768708","https://openalex.org/W2128601422","https://openalex.org/W2131186249","https://openalex.org/W2131271579","https://openalex.org/W2136068873","https://openalex.org/W2136231029","https://openalex.org/W2136632285","https://openalex.org/W2139437267","https://openalex.org/W2140437680","https://openalex.org/W2141202455","https://openalex.org/W2141885858","https://openalex.org/W2141920662","https://openalex.org/W2143485490","https://openalex.org/W2144283502","https://openalex.org/W2145044321","https://openalex.org/W2145527356","https://openalex.org/W2145537580","https://openalex.org/W2146028878","https://openalex.org/W2147681319","https://openalex.org/W2149452073","https://openalex.org/W2149559438","https://openalex.org/W2149573313","https://openalex.org/W2149943169","https://openalex.org/W2152093511","https://openalex.org/W2153717161","https://openalex.org/W2154139219","https://openalex.org/W2154375983","https://openalex.org/W2154860326","https://openalex.org/W2155628349","https://openalex.org/W2156668042","https://openalex.org/W2156995746","https://openalex.org/W2159954944","https://openalex.org/W2160053034","https://openalex.org/W2160444236","https://openalex.org/W2160734881","https://openalex.org/W2160969485","https://openalex.org/W2163166295","https://openalex.org/W2165770381","https://openalex.org/W2166123725","https://openalex.org/W2166395958","https://openalex.org/W2167583584","https://openalex.org/W2167719367","https://openalex.org/W2169427451","https://openalex.org/W2170551349","https://openalex.org/W2175526948","https://openalex.org/W2178637309","https://openalex.org/W2214186913","https://openalex.org/W2246182597","https://openalex.org/W2254199494","https://openalex.org/W2263582186","https://openalex.org/W2283787433","https://openalex.org/W2294353708","https://openalex.org/W2315521535","https://openalex.org/W2337508844","https://openalex.org/W2337747100","https://openalex.org/W2340204314","https://openalex.org/W2341364667","https://openalex.org/W2345879537","https://openalex.org/W2345976595","https://openalex.org/W2346515309","https://openalex.org/W2470052926","https://openalex.org/W2474345237","https://openalex.org/W2522132818","https://openalex.org/W2530313893","https://openalex.org/W2534610127","https://openalex.org/W2542276527","https://openalex.org/W2553931089","https://openalex.org/W2572263783","https://openalex.org/W2588997555","https://openalex.org/W2592014237","https://openalex.org/W2599417231","https://openalex.org/W2605810679","https://openalex.org/W2608221519","https://openalex.org/W2610929625","https://openalex.org/W2611294456","https://openalex.org/W2619865459","https://openalex.org/W2623492145","https://openalex.org/W2735092275","https://openalex.org/W2735611463","https://openalex.org/W2736920791","https://openalex.org/W2742647527","https://openalex.org/W2745006471","https://openalex.org/W2753961085","https://openalex.org/W2754579667","https://openalex.org/W2766330607","https://openalex.org/W2766401759","https://openalex.org/W2768748254","https://openalex.org/W2773939681","https://openalex.org/W2774072836","https://openalex.org/W2786358949","https://openalex.org/W2801968534","https://openalex.org/W2805238404","https://openalex.org/W2808042160","https://openalex.org/W2810538097","https://openalex.org/W2863731766","https://openalex.org/W2872075145","https://openalex.org/W2889019390","https://openalex.org/W2889185930","https://openalex.org/W2900634768","https://openalex.org/W2903129287","https://openalex.org/W2910615673","https://openalex.org/W2913972921","https://openalex.org/W2918965813","https://openalex.org/W2921431225","https://openalex.org/W2921815890","https://openalex.org/W2937306826","https://openalex.org/W2938868597","https://openalex.org/W2941342985","https://openalex.org/W2944447283","https://openalex.org/W2948263509","https://openalex.org/W2949491511","https://openalex.org/W2949820012","https://openalex.org/W2950150251","https://openalex.org/W2950310673","https://openalex.org/W2950464960","https://openalex.org/W2950489962","https://openalex.org/W2951054376","https://openalex.org/W2951220983","https://openalex.org/W2951912016","https://openalex.org/W2952673498","https://openalex.org/W2953229963","https://openalex.org/W2966589940","https://openalex.org/W2974568579","https://openalex.org/W2981413553","https://openalex.org/W2986925300","https://openalex.org/W2987650093","https://openalex.org/W3006517346","https://openalex.org/W3008812673","https://openalex.org/W3014465808","https://openalex.org/W3019706413","https://openalex.org/W3027089056","https://openalex.org/W3027978705","https://openalex.org/W3028280407","https://openalex.org/W3033291971","https://openalex.org/W3041848892","https://openalex.org/W3042305844","https://openalex.org/W3080559248","https://openalex.org/W3082720702","https://openalex.org/W3083864964","https://openalex.org/W3104596207","https://openalex.org/W3119059272","https://openalex.org/W3142746996","https://openalex.org/W4211049762","https://openalex.org/W4231601595","https://openalex.org/W4320301318","https://openalex.org/W6659577852","https://openalex.org/W6664528769","https://openalex.org/W6678050955","https://openalex.org/W6680752580","https://openalex.org/W6684689185","https://openalex.org/W6703630792","https://openalex.org/W6704012093","https://openalex.org/W6745738181","https://openalex.org/W6746616251","https://openalex.org/W6753323195","https://openalex.org/W6759936577","https://openalex.org/W6761844579","https://openalex.org/W6767903881","https://openalex.org/W6777343854","https://openalex.org/W6781138393","https://openalex.org/W6786067909","https://openalex.org/W6792237021","https://openalex.org/W6826725030"],"related_works":["https://openalex.org/W2055448750","https://openalex.org/W3134563641","https://openalex.org/W3157741229","https://openalex.org/W1834562783","https://openalex.org/W3098103638","https://openalex.org/W1986608492","https://openalex.org/W2794386548","https://openalex.org/W4381279187","https://openalex.org/W2773247701","https://openalex.org/W1841715584"],"abstract_inverted_index":{"Recent":[0],"advances":[1],"in":[2,127,204],"high-throughput":[3],"sequencing":[4,84],"technologies":[5],"and":[6,35,39,54,62,94,97,117,130,190,194],"computational":[7],"methods":[8],"have":[9,47],"added":[10],"a":[11,74],"new":[12],"dimension":[13],"to":[14,26,122,172,200],"metagenomic":[15],"data":[16],"analysis":[17,52,72,99,176],"i.e.":[18],"genome-resolved":[19,50,70],"metagenomics.":[20],"In":[21,42,65],"general":[22],"terms,":[23],"it":[24],"refers":[25],"the":[27,49,83,101,112,118,124,128,143,158,164,174,186,201,210],"recovery":[28,129],"of":[29,76,82,100,106,133,148,157],"draft":[30],"or":[31],"high-quality":[32],"microbial":[33,58],"genomes":[34,134],"their":[36],"taxonomic":[37,96],"classification":[38],"functional":[40,98],"annotation.":[41],"recent":[43],"years,":[44],"several":[45],"studies":[46],"utilized":[48],"metagenome":[51,71,89,137],"approach":[53],"identified":[55],"previously":[56],"unknown":[57],"species":[59],"from":[60,135],"human":[61],"environmental":[63],"metagenomes.":[64],"this":[66],"review,":[67],"we":[68,110,140,183],"describe":[69],"as":[73,151,153],"series":[75],"four":[77,108],"necessary":[78],"steps:":[79],"(i)":[80],"preprocessing":[81],"reads,":[85],"(ii)":[86],"de":[87],"novo":[88],"assembly,":[90],"(iii)":[91],"genome":[92],"binning":[93],"(iv)":[95],"recovered":[102,159],"genomes.":[103,160],"For":[104],"each":[105],"these":[107],"steps,":[109],"discuss":[111,142],"most":[113,187],"commonly":[114],"used":[115,171],"tools":[116,144,193],"currently":[119,165],"available":[120,166],"pipelines":[121,167,195],"guide":[123],"scientific":[125,202],"community":[126,203],"subsequent":[131],"analyses":[132],"any":[136],"sample.":[138],"Furthermore,":[139],"also":[141,162],"required":[145],"for":[146,154],"validation":[147],"assembly":[149],"quality":[150,156],"well":[152],"improving":[155],"We":[161],"highlight":[163,185],"that":[168,196],"can":[169,197],"be":[170,198],"automate":[173],"whole":[175],"without":[177],"having":[178],"advanced":[179],"bioinformatics":[180],"knowledge.":[181],"Finally,":[182],"will":[184],"widely":[188],"adapted":[189],"actively":[191],"maintained":[192],"helpful":[199],"decision":[205],"making":[206],"before":[207],"they":[208],"commence":[209],"analysis.":[211]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":3}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
