{"id":"https://openalex.org/W3135324979","doi":"https://doi.org/10.1093/bib/bbab017","title":"PySmash: Python package and individual executable program for representative substructure generation and application","display_name":"PySmash: Python package and individual executable program for representative substructure generation and application","publication_year":2021,"publication_date":"2021-01-14","ids":{"openalex":"https://openalex.org/W3135324979","doi":"https://doi.org/10.1093/bib/bbab017","mag":"3135324979","pmid":"https://pubmed.ncbi.nlm.nih.gov/33709154"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab017","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab017","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"software-paper","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085127108","display_name":"Ziyi Yang","orcid":"https://orcid.org/0000-0002-3550-9283"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210159865","display_name":"Xiangya Hospital Central South University","ror":"https://ror.org/05c1yfj14","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159865"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zi-Yi Yang","raw_affiliation_strings":["Department of Pharmacy, Xiangya Hospital, Central South University and the Xiangya School of Pharmaceutical Sciences, Central South University, Sichuan, China","Xiangya School of Pharmaceutical Sciences, Central South University, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacy, Xiangya Hospital, Central South University and the Xiangya School of Pharmaceutical Sciences, Central South University, Sichuan, China","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I4210159865"]},{"raw_affiliation_string":"Xiangya School of Pharmaceutical Sciences, Central South University, Hunan, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112896065","display_name":"Zhijiang Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210159865","display_name":"Xiangya Hospital Central South University","ror":"https://ror.org/05c1yfj14","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159865"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhi-Jiang Yang","raw_affiliation_strings":["Department of Pharmacy, Xiangya Hospital, Central South University and the Xiangya School of Pharmaceutical Sciences, Central South University, Sichuan, China","Xiangya School of Pharmaceutical Sciences, Central South University, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacy, Xiangya Hospital, Central South University and the Xiangya School of Pharmaceutical Sciences, Central South University, Sichuan, China","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I4210159865"]},{"raw_affiliation_string":"Xiangya School of Pharmaceutical Sciences, Central South University, Hunan, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100691969","display_name":"Yue Zhao","orcid":"https://orcid.org/0000-0002-1119-2605"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue Zhao","raw_affiliation_strings":["Xiangya School of Pharmaceutical Sciences, Central South University (Changsha), Sichuan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xiangya School of Pharmaceutical Sciences, Central South University (Changsha), Sichuan, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021389154","display_name":"Mingzhu Yin","orcid":"https://orcid.org/0000-0002-6964-7131"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210087212","display_name":"SKiN Health","ror":"https://ror.org/005wzfh51","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I4210087212"]},{"id":"https://openalex.org/I4210159865","display_name":"Xiangya Hospital Central South University","ror":"https://ror.org/05c1yfj14","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159865"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Ming-Zhu Yin","raw_affiliation_strings":["Department of Dermatology, Hunan Engineering Research Center of Skin Health and Disease, Hunan Key Laboratory of Skin Cancer and Psoriasis, Xiangya Hospital, Central South University, Hunan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Dermatology, Hunan Engineering Research Center of Skin Health and Disease, Hunan Key Laboratory of Skin Cancer and Psoriasis, Xiangya Hospital, Central South University, Hunan","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I4210087212","https://openalex.org/I4210159865"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076594495","display_name":"Aiping L\u00fc","orcid":"https://orcid.org/0000-0002-2303-0494"},"institutions":[{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Ai-Ping Lu","raw_affiliation_strings":["Institute for Advancing Translational Medicine in Bone and Joint Diseases, School of Chinese Medicine, Hong Kong Baptist University, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Advancing Translational Medicine in Bone and Joint Diseases, School of Chinese Medicine, Hong Kong Baptist University, Hong Kong","institution_ids":["https://openalex.org/I141568987"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100762773","display_name":"Xiang Chen","orcid":"https://orcid.org/0000-0003-0688-636X"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210087212","display_name":"SKiN Health","ror":"https://ror.org/005wzfh51","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I4210087212"]},{"id":"https://openalex.org/I4210159865","display_name":"Xiangya Hospital Central South University","ror":"https://ror.org/05c1yfj14","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159865"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Xiang Chen","raw_affiliation_strings":["Department of Dermatology, Hunan Engineering Research Center of Skin Health and Disease, Hunan Key Laboratory of Skin Cancer and Psoriasis, Xiangya Hospital, Central South University, Hunan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Dermatology, Hunan Engineering Research Center of Skin Health and Disease, Hunan Key Laboratory of Skin Cancer and Psoriasis, Xiangya Hospital, Central South University, Hunan","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I4210087212","https://openalex.org/I4210159865"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100745821","display_name":"Shao Liu","orcid":"https://orcid.org/0000-0002-0576-8698"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210159865","display_name":"Xiangya Hospital Central South University","ror":"https://ror.org/05c1yfj14","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159865"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shao Liu","raw_affiliation_strings":["Department of Pharmacy, Xiangya Hospital, Central South University, Hunan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacy, Xiangya Hospital, Central South University, Hunan","institution_ids":["https://openalex.org/I139660479","https://openalex.org/I4210159865"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028525523","display_name":"Tingjun Hou","orcid":"https://orcid.org/0000-0001-7227-2580"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ting-Jun Hou","raw_affiliation_strings":["College of Pharmaceutical Sciences, Zhejiang University, China"],"raw_orcid":"https://orcid.org/0000-0001-7227-2580","affiliations":[{"raw_affiliation_string":"College of Pharmaceutical Sciences, Zhejiang University, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083809384","display_name":"Dongsheng Cao","orcid":"https://orcid.org/0000-0003-3604-3785"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dong-Sheng Cao","raw_affiliation_strings":["Xiangya School of Pharmaceutical Sciences, Central South University, China"],"raw_orcid":"https://orcid.org/0000-0003-3604-3785","affiliations":[{"raw_affiliation_string":"Xiangya School of Pharmaceutical Sciences, Central South University, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5028525523","https://openalex.org/A5083809384","https://openalex.org/A5100745821"],"corresponding_institution_ids":["https://openalex.org/I139660479","https://openalex.org/I4210159865","https://openalex.org/I76130692"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12023","display_name":"Cholinesterase and Neurodegenerative Diseases","score":0.0013000000035390258,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.899762749671936},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.8947254419326782},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7822514772415161},{"id":"https://openalex.org/keywords/substructure","display_name":"Substructure","score":0.7018522024154663},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.45002254843711853},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.43812915682792664},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.42675361037254333},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.41218236088752747},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3983355760574341}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.899762749671936},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.8947254419326782},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7822514772415161},{"id":"https://openalex.org/C99679407","wikidata":"https://www.wikidata.org/wiki/Q56761637","display_name":"Substructure","level":2,"score":0.7018522024154663},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.45002254843711853},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.43812915682792664},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.42675361037254333},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.41218236088752747},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3983355760574341},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002273","descriptor_name":"Carcinogens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002273","descriptor_name":"Carcinogens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002273","descriptor_name":"Carcinogens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004354","descriptor_name":"Drug Screening Assays, Antitumor","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004354","descriptor_name":"Drug Screening Assays, Antitumor","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004354","descriptor_name":"Drug Screening Assays, Antitumor","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015197","descriptor_name":"Carcinogenicity Tests","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015197","descriptor_name":"Carcinogenicity Tests","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015197","descriptor_name":"Carcinogenicity Tests","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbab017","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbab017","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33709154","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33709154","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1171080475","display_name":null,"funder_award_id":"2020C03010","funder_id":"https://openalex.org/F8142712028","funder_display_name":"Key Research and Development Program of Zhejiang Province"},{"id":"https://openalex.org/G2736754484","display_name":null,"funder_award_id":"81,773,632","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F8142712028","display_name":"Key Research and Development Program of Zhejiang Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1964446176","https://openalex.org/W1975875826","https://openalex.org/W1988037271","https://openalex.org/W1990399577","https://openalex.org/W2004734764","https://openalex.org/W2033757486","https://openalex.org/W2041005506","https://openalex.org/W2043509228","https://openalex.org/W2044834685","https://openalex.org/W2046940765","https://openalex.org/W2084087750","https://openalex.org/W2087482484","https://openalex.org/W2127432713","https://openalex.org/W2136588642","https://openalex.org/W2168209541","https://openalex.org/W2170726034","https://openalex.org/W2176758925","https://openalex.org/W2289693310","https://openalex.org/W2328014372","https://openalex.org/W2464316836","https://openalex.org/W2472990710","https://openalex.org/W2622206241","https://openalex.org/W2739783898","https://openalex.org/W2767034401","https://openalex.org/W2777884179","https://openalex.org/W2801088198","https://openalex.org/W2810023675","https://openalex.org/W2949243165","https://openalex.org/W2999258922","https://openalex.org/W3006508031","https://openalex.org/W3043809093","https://openalex.org/W3083032557","https://openalex.org/W6685146747"],"related_works":["https://openalex.org/W3153444835","https://openalex.org/W2153916713","https://openalex.org/W2023846184","https://openalex.org/W2703419385","https://openalex.org/W2329056228","https://openalex.org/W2284584236","https://openalex.org/W2169637744","https://openalex.org/W3034716491","https://openalex.org/W4240625990","https://openalex.org/W2169715360"],"abstract_inverted_index":{"BACKGROUND:":[0],"Substructure":[1],"screening":[2,188],"is":[3,80,185],"widely":[4],"applied":[5],"to":[6,26,74,93,208],"evaluate":[7],"the":[8,31,43,66,163,177,197,210],"molecular":[9,222],"potency":[10],"and":[11,20,39,71,76,90,112,122,134,151,155,173,180,196,221,228],"ADMET":[12],"properties":[13],"of":[14,33,46,68,97,105,120,127,182,199,212],"compounds":[15,35],"in":[16,214],"drug":[17],"discovery":[18],"pipelines,":[19],"it":[21],"can":[22,54,141],"also":[23],"be":[24],"used":[25],"interpret":[27],"QSAR":[28],"models":[29],"for":[30,147,165,176],"design":[32],"new":[34],"with":[36,201],"desirable":[37],"physicochemical":[38],"biological":[40],"properties.":[41],"With":[42],"continuous":[44],"accumulation":[45],"more":[47,63],"experimental":[48],"data,":[49],"data-driven":[50],"computational":[51],"systems":[52],"which":[53,117],"derive":[55],"representative":[56,78,98,183],"substructures":[57,79,200],"from":[58],"large":[59],"chemical":[60],"libraries":[61],"attract":[62],"attention.":[64],"Therefore,":[65],"development":[67],"an":[69,113],"integrated":[70,174],"convenient":[72],"tool":[73,92,175],"generate":[75,94],"implement":[77],"urgently":[81],"needed.":[82],"RESULTS:":[83],"In":[84],"this":[85],"study,":[86],"PySmash,":[87,170],"a":[88,109,171],"user-friendly":[89,172],"powerful":[91],"different":[95],"types":[96,126],"substructures,":[99,184],"was":[100],"developed.":[101],"The":[102],"current":[103],"version":[104],"PySmash":[106,161,213],"provides":[107,162],"both":[108],"Python":[110,229],"package":[111,230],"individual":[114],"executable":[115,226],"program,":[116],"achieves":[118],"ease":[119],"operation":[121],"pipeline":[123],"integration.":[124],"Three":[125,187],"substructure":[128,148],"generation":[129,179],"algorithms,":[130,137],"including":[131,190],"circular,":[132],"path-based":[133],"functional":[135],"group-based":[136],"are":[138,206,231],"provided.":[139],"Users":[140],"conveniently":[142],"customize":[143],"their":[144],"own":[145],"requirements":[146],"size,":[149],"accuracy":[150],"coverage,":[152],"statistical":[153],"significance":[154],"parallel":[156],"computation":[157],"during":[158],"execution.":[159],"Besides,":[160],"function":[164],"external":[166],"data":[167],"screening.":[168],"CONCLUSION:":[169],"automatic":[178],"implementation":[181],"presented.":[186],"examples,":[189],"toxicophore":[191],"derivation,":[192],"privileged":[193],"motif":[194],"detection":[195],"integration":[198],"machine":[202],"learning":[203],"(ML)":[204],"models,":[205],"provided":[207],"illustrate":[209],"utility":[211],"safety":[215],"profile":[216],"evaluation,":[217],"therapeutic":[218],"activity":[219],"exploration":[220],"optimization,":[223],"respectively.":[224],"Its":[225],"program":[227],"available":[232],"at":[233],"https://github.com/kotori-y/pySmash.":[234]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
