{"id":"https://openalex.org/W3125909203","doi":"https://doi.org/10.1093/bib/bbaa431","title":"Analysis of selection in protein-coding sequences accounting for common biases","display_name":"Analysis of selection in protein-coding sequences accounting for common biases","publication_year":2020,"publication_date":"2020-12-23","ids":{"openalex":"https://openalex.org/W3125909203","doi":"https://doi.org/10.1093/bib/bbaa431","mag":"3125909203","pmid":"https://pubmed.ncbi.nlm.nih.gov/33479739"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa431","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa431","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080222368","display_name":"Roberto Del Amparo","orcid":"https://orcid.org/0000-0003-2189-1263"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Roberto Del Amparo","raw_affiliation_strings":["CINBIO (Biomedical Research Center), University of Vigo, 36310 Vigo, Spain","Department of Biochemistry, Genetics and Immunology, University of Vigo, 36310 Vigo, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CINBIO (Biomedical Research Center), University of Vigo, 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]},{"raw_affiliation_string":"Department of Biochemistry, Genetics and Immunology, University of Vigo, 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081367699","display_name":"Catarina Branco","orcid":"https://orcid.org/0000-0002-6669-2519"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Catarina Branco","raw_affiliation_strings":["CINBIO (Biomedical Research Center), University of Vigo, 36310 Vigo, Spain","Department of Biochemistry, Genetics and Immunology, University of Vigo, 36310 Vigo, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CINBIO (Biomedical Research Center), University of Vigo, 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]},{"raw_affiliation_string":"Department of Biochemistry, Genetics and Immunology, University of Vigo, 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039138644","display_name":"Jes\u00fas Arenas","orcid":"https://orcid.org/0000-0002-8134-0693"},"institutions":[{"id":"https://openalex.org/I255234318","display_name":"Universidad de Zaragoza","ror":"https://ror.org/012a91z28","country_code":"ES","type":"education","lineage":["https://openalex.org/I255234318"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jes\u00fas Arenas","raw_affiliation_strings":["Unit of Microbiology and Immunology, University of Zaragoza, 50013 Zaragoza, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit of Microbiology and Immunology, University of Zaragoza, 50013 Zaragoza, Spain","institution_ids":["https://openalex.org/I255234318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010298033","display_name":"Alberto Vicens","orcid":"https://orcid.org/0000-0001-6718-3233"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alberto Vicens","raw_affiliation_strings":["CINBIO (Biomedical Research Center), University of Vigo, 36310 Vigo, Spain","Department of Biochemistry, Genetics and Immunology, University of Vigo, 36310 Vigo, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CINBIO (Biomedical Research Center), University of Vigo, 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]},{"raw_affiliation_string":"Department of Biochemistry, Genetics and Immunology, University of Vigo, 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037761662","display_name":"Miguel Arenas","orcid":"https://orcid.org/0000-0002-0516-2717"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Miguel Arenas","raw_affiliation_strings":["CINBIO (Biomedical Research Center), University of Vigo, 36310 Vigo, Spain","Department of Biochemistry, Genetics and Immunology, University of Vigo, 36310 Vigo, Spain"],"raw_orcid":"https://orcid.org/0000-0002-0516-2717","affiliations":[{"raw_affiliation_string":"CINBIO (Biomedical Research Center), University of Vigo, 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]},{"raw_affiliation_string":"Department of Biochemistry, Genetics and Immunology, University of Vigo, 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5037761662"],"corresponding_institution_ids":["https://openalex.org/I6289922"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.491,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.82689108,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"22","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nonsynonymous-substitution","display_name":"Nonsynonymous substitution","score":0.8891493082046509},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.6353530287742615},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.6094669699668884},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5859225392341614},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5402007699012756},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.48493650555610657},{"id":"https://openalex.org/keywords/synonymous-substitution","display_name":"Synonymous substitution","score":0.4606893062591553},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.44845128059387207},{"id":"https://openalex.org/keywords/coding-region","display_name":"Coding region","score":0.447085440158844},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37641289830207825},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.35610678791999817},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.340901643037796},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3215736150741577},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.30015748739242554},{"id":"https://openalex.org/keywords/codon-usage-bias","display_name":"Codon usage bias","score":0.26773059368133545},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24270272254943848},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.21582069993019104},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.10621321201324463}],"concepts":[{"id":"https://openalex.org/C149904235","wikidata":"https://www.wikidata.org/wiki/Q7049620","display_name":"Nonsynonymous substitution","level":4,"score":0.8891493082046509},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.6353530287742615},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.6094669699668884},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5859225392341614},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5402007699012756},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.48493650555610657},{"id":"https://openalex.org/C138025448","wikidata":"https://www.wikidata.org/wiki/Q7662597","display_name":"Synonymous substitution","level":5,"score":0.4606893062591553},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.44845128059387207},{"id":"https://openalex.org/C91779695","wikidata":"https://www.wikidata.org/wiki/Q3780824","display_name":"Coding region","level":3,"score":0.447085440158844},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37641289830207825},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.35610678791999817},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.340901643037796},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3215736150741577},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.30015748739242554},{"id":"https://openalex.org/C87253356","wikidata":"https://www.wikidata.org/wiki/Q1106472","display_name":"Codon usage bias","level":4,"score":0.26773059368133545},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24270272254943848},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.21582069993019104},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.10621321201324463},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020125","descriptor_name":"Mutation, Missense","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020125","descriptor_name":"Mutation, Missense","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020125","descriptor_name":"Mutation, Missense","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaa431","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa431","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33479739","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33479739","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:www.investigo.biblioteca.uvigo.es:11093/6494","is_oa":false,"landing_page_url":"https://academic.oup.com/bib/article/doi/10.1093/bib/bbaa431/6105943","pdf_url":null,"source":{"id":"https://openalex.org/S4377196408","display_name":"Investigo Institutional repository of UVigo (Universidade de Vigo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I6289922","host_organization_name":"Universidade de Vigo","host_organization_lineage":["https://openalex.org/I6289922"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2523291178","display_name":null,"funder_award_id":"SFRH/BD/143607/2019","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6975434950","display_name":null,"funder_award_id":"ED431F 2018/08","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"}],"funders":[{"id":"https://openalex.org/F4320326655","display_name":"Xunta de Galicia","ror":"https://ror.org/0181xnw06"},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":129,"referenced_works":["https://openalex.org/W420957490","https://openalex.org/W1519765314","https://openalex.org/W1534406401","https://openalex.org/W1603941993","https://openalex.org/W1626704411","https://openalex.org/W1687265639","https://openalex.org/W1880845650","https://openalex.org/W1881807356","https://openalex.org/W1920973730","https://openalex.org/W1940662708","https://openalex.org/W1944521943","https://openalex.org/W1967195968","https://openalex.org/W1977862457","https://openalex.org/W1978444265","https://openalex.org/W1982372752","https://openalex.org/W1986196866","https://openalex.org/W1988652743","https://openalex.org/W1997461927","https://openalex.org/W2015828874","https://openalex.org/W2017777683","https://openalex.org/W2025124856","https://openalex.org/W2025379175","https://openalex.org/W2032769232","https://openalex.org/W2043066342","https://openalex.org/W2045641296","https://openalex.org/W2053224153","https://openalex.org/W2057456873","https://openalex.org/W2067207399","https://openalex.org/W2072550492","https://openalex.org/W2079534030","https://openalex.org/W2084703021","https://openalex.org/W2097204162","https://openalex.org/W2104306559","https://openalex.org/W2106068402","https://openalex.org/W2108504053","https://openalex.org/W2108795433","https://openalex.org/W2110335151","https://openalex.org/W2111414304","https://openalex.org/W2111978413","https://openalex.org/W2113286403","https://openalex.org/W2115888213","https://openalex.org/W2116209557","https://openalex.org/W2116416291","https://openalex.org/W2118224447","https://openalex.org/W2120567086","https://openalex.org/W2120611093","https://openalex.org/W2122158321","https://openalex.org/W2126740061","https://openalex.org/W2127435852","https://openalex.org/W2129157300","https://openalex.org/W2129465264","https://openalex.org/W2130007916","https://openalex.org/W2131994108","https://openalex.org/W2132356750","https://openalex.org/W2132926880","https://openalex.org/W2133905410","https://openalex.org/W2136847298","https://openalex.org/W2136872570","https://openalex.org/W2138178197","https://openalex.org/W2141344219","https://openalex.org/W2142168944","https://openalex.org/W2144061158","https://openalex.org/W2145875193","https://openalex.org/W2145932946","https://openalex.org/W2146602601","https://openalex.org/W2147082825","https://openalex.org/W2147126179","https://openalex.org/W2148047088","https://openalex.org/W2151614109","https://openalex.org/W2153811962","https://openalex.org/W2155196220","https://openalex.org/W2157362913","https://openalex.org/W2158597791","https://openalex.org/W2159927403","https://openalex.org/W2160378127","https://openalex.org/W2160689530","https://openalex.org/W2161618969","https://openalex.org/W2162473374","https://openalex.org/W2163540592","https://openalex.org/W2165892911","https://openalex.org/W2165912261","https://openalex.org/W2166097641","https://openalex.org/W2171126517","https://openalex.org/W2171675548","https://openalex.org/W2186750819","https://openalex.org/W2266439690","https://openalex.org/W2316045699","https://openalex.org/W2338147802","https://openalex.org/W2483434413","https://openalex.org/W2485863807","https://openalex.org/W2488079145","https://openalex.org/W2502884243","https://openalex.org/W2555580333","https://openalex.org/W2568937766","https://openalex.org/W2581565121","https://openalex.org/W2605428395","https://openalex.org/W2620298867","https://openalex.org/W2623889753","https://openalex.org/W2661779417","https://openalex.org/W2755331695","https://openalex.org/W2758370289","https://openalex.org/W2771838944","https://openalex.org/W2781938185","https://openalex.org/W2800386769","https://openalex.org/W2886981503","https://openalex.org/W2897701522","https://openalex.org/W2898053721","https://openalex.org/W2905743276","https://openalex.org/W2940391028","https://openalex.org/W2944021648","https://openalex.org/W2949782677","https://openalex.org/W2950653175","https://openalex.org/W2952196670","https://openalex.org/W2958124936","https://openalex.org/W2962291953","https://openalex.org/W2989915159","https://openalex.org/W2994301183","https://openalex.org/W3011840618","https://openalex.org/W3031982697","https://openalex.org/W3036039277","https://openalex.org/W4230357098","https://openalex.org/W4235016832","https://openalex.org/W6637333801","https://openalex.org/W6639376086","https://openalex.org/W6640287769","https://openalex.org/W6675831761","https://openalex.org/W6722450821","https://openalex.org/W6731392063","https://openalex.org/W6762319404"],"related_works":["https://openalex.org/W2063135364","https://openalex.org/W2101041335","https://openalex.org/W4306168892","https://openalex.org/W2155896987","https://openalex.org/W1994163109","https://openalex.org/W4388316373","https://openalex.org/W2141848847","https://openalex.org/W2768015964","https://openalex.org/W1909004997","https://openalex.org/W2951834340"],"abstract_inverted_index":{"The":[0,25],"evolution":[1],"of":[2,27,32,48,62,116,123,132,141],"protein-coding":[3,158],"genes":[4],"is":[5,35,145],"usually":[6],"driven":[7],"by":[8],"selective":[9],"processes,":[10],"which":[11,70],"favor":[12],"some":[13],"evolutionary":[14,149],"trajectories":[15],"over":[16],"others,":[17],"optimizing":[18],"the":[19,39,49,73,78,83,113,117,121,130,133,137],"subsequent":[20],"protein":[21],"stability":[22,138],"and":[23,86,108,139],"activity.":[24],"analysis":[26],"selection":[28,156],"in":[29,82,157],"this":[30,54,93],"type":[31],"genetic":[33],"data":[34],"broadly":[36],"performed":[37],"with":[38,104],"metric":[40,55,94],"nonsynonymous/synonymous":[41],"substitution":[42],"rate":[43],"ratio":[44],"(dN/dS).":[45],"However,":[46],"most":[47,79],"well-established":[50],"methodologies":[51],"to":[52,91,147,153],"estimate":[53,92,155],"make":[56],"crucial":[57],"assumptions,":[58],"such":[59,101,128],"as":[60,129],"lack":[61],"recombination":[63],"or":[64],"invariable":[65],"codon":[66],"frequencies":[67],"along":[68,103],"genes,":[69],"can":[71],"bias":[72],"estimation.":[74],"Here,":[75],"we":[76],"review":[77,144],"relevant":[80],"biases":[81],"dN/dS":[84,119],"estimation":[85],"provide":[87],"a":[88],"detailed":[89],"guide":[90],"using":[95],"state-of-the-art":[96],"procedures":[97],"that":[98,151],"account":[99],"for":[100],"biases,":[102],"illustrative":[105],"practical":[106],"examples":[107],"recommendations.":[109],"We":[110],"also":[111],"discuss":[112],"traditional":[114],"interpretation":[115],"estimated":[118],"emphasizing":[120],"importance":[122],"considering":[124],"complementary":[125],"biological":[126],"information":[127],"role":[131],"observed":[134],"substitutions":[135],"on":[136],"function":[140],"proteins.":[142],"This":[143],"oriented":[146],"help":[148],"biologists":[150],"aim":[152],"accurately":[154],"sequences.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3}],"updated_date":"2026-07-20T07:56:41.581041","created_date":"2025-10-10T00:00:00"}
