{"id":"https://openalex.org/W3124138367","doi":"https://doi.org/10.1093/bib/bbaa419","title":"Serial co-expression analysis of host factors from SARS-CoV viruses highly converges with former high-throughput screenings and proposes key regulators","display_name":"Serial co-expression analysis of host factors from SARS-CoV viruses highly converges with former high-throughput screenings and proposes key regulators","publication_year":2020,"publication_date":"2020-12-21","ids":{"openalex":"https://openalex.org/W3124138367","doi":"https://doi.org/10.1093/bib/bbaa419","mag":"3124138367","pmid":"https://pubmed.ncbi.nlm.nih.gov/33458747"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa419","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa419","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/1038/36654739/bbaa419.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/22/2/1038/36654739/bbaa419.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029314813","display_name":"Antonio J. P\u00e9rez\u2010Pulido","orcid":"https://orcid.org/0000-0003-3343-2822"},"institutions":[{"id":"https://openalex.org/I4210111405","display_name":"Centro Andaluz de Biolog\u00eda del Desarrollo","ror":"https://ror.org/01v5e3436","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210111405","https://openalex.org/I918821925","https://openalex.org/I95013407"]},{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Antonio J P\u00e9rez-Pulido","raw_affiliation_strings":["Centro Andaluz de Biologia del Desarrollo (CABD, UPO-CSIC-JA). Facultad de Ciencias Experimentales (\u00c1rea de Gen\u00e9tica), Universidad Pablo de Olavide, 41013, Sevilla, Spain"],"raw_orcid":"https://orcid.org/0000-0003-3343-2822","affiliations":[{"raw_affiliation_string":"Centro Andaluz de Biologia del Desarrollo (CABD, UPO-CSIC-JA). Facultad de Ciencias Experimentales (\u00c1rea de Gen\u00e9tica), Universidad Pablo de Olavide, 41013, Sevilla, Spain","institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016492030","display_name":"G. Asencio\u2013Cort\u00e9s","orcid":"https://orcid.org/0000-0003-0874-1826"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gualberto Asencio-Cort\u00e9s","raw_affiliation_strings":["Data Science & Big Data Lab, Universidad Pablo de Olavide, 41013, Sevilla, Spain"],"raw_orcid":"https://orcid.org/0000-0003-0874-1826","affiliations":[{"raw_affiliation_string":"Data Science & Big Data Lab, Universidad Pablo de Olavide, 41013, Sevilla, Spain","institution_ids":["https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ana M Brokate-Llanos","orcid":"https://orcid.org/0000-0003-1715-8579"},"institutions":[{"id":"https://openalex.org/I4210111405","display_name":"Centro Andaluz de Biolog\u00eda del Desarrollo","ror":"https://ror.org/01v5e3436","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210111405","https://openalex.org/I918821925","https://openalex.org/I95013407"]},{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ana M Brokate-Llanos","raw_affiliation_strings":["Centro Andaluz de Biologia del Desarrollo (CABD, UPO-CSIC-JA). Facultad de Ciencias Experimentales (\u00c1rea de Gen\u00e9tica), Universidad Pablo de Olavide, 41013, Sevilla, Spain"],"raw_orcid":"https://orcid.org/0000-0003-1715-8579","affiliations":[{"raw_affiliation_string":"Centro Andaluz de Biologia del Desarrollo (CABD, UPO-CSIC-JA). Facultad de Ciencias Experimentales (\u00c1rea de Gen\u00e9tica), Universidad Pablo de Olavide, 41013, Sevilla, Spain","institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026430307","display_name":"Gloria Brea\u2010Calvo","orcid":"https://orcid.org/0000-0001-5536-6868"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210111366","display_name":"Centre for Biomedical Network Research on Rare Diseases","ror":"https://ror.org/01ygm5w19","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210111366"]},{"id":"https://openalex.org/I4210111405","display_name":"Centro Andaluz de Biolog\u00eda del Desarrollo","ror":"https://ror.org/01v5e3436","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210111405","https://openalex.org/I918821925","https://openalex.org/I95013407"]},{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gloria Brea-Calvo","raw_affiliation_strings":["CIBERER, Instituto de Salud Carlos III, 28000, Madrid, Spain","Centro Andaluz de Biolog\u00eda del Desarrollo, Universidad Pablo de Olavide-CSIC-JA, 41013, Sevilla, Spain"],"raw_orcid":"https://orcid.org/0000-0001-5536-6868","affiliations":[{"raw_affiliation_string":"CIBERER, Instituto de Salud Carlos III, 28000, Madrid, Spain","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210111366"]},{"raw_affiliation_string":"Centro Andaluz de Biolog\u00eda del Desarrollo, Universidad Pablo de Olavide-CSIC-JA, 41013, Sevilla, Spain","institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029267718","display_name":"Rosario Rodr\u00edguez-Gri\u00f1olo","orcid":"https://orcid.org/0000-0002-3312-0848"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Rosario Rodr\u00edguez-Gri\u00f1olo","raw_affiliation_strings":["Dpto. de Econom\u00eda, M\u00e9todos Cuantitativos e Historia Econ\u00f3mica. Universidad Pablo de Olavide, 41013 Sevilla, Spain"],"raw_orcid":"https://orcid.org/0000-0002-3312-0848","affiliations":[{"raw_affiliation_string":"Dpto. de Econom\u00eda, M\u00e9todos Cuantitativos e Historia Econ\u00f3mica. Universidad Pablo de Olavide, 41013 Sevilla, Spain","institution_ids":["https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102929477","display_name":"Andr\u00e9s Garz\u00f3n","orcid":"https://orcid.org/0000-0003-4299-7198"},"institutions":[{"id":"https://openalex.org/I4210111405","display_name":"Centro Andaluz de Biolog\u00eda del Desarrollo","ror":"https://ror.org/01v5e3436","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210111405","https://openalex.org/I918821925","https://openalex.org/I95013407"]},{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Andr\u00e9s Garz\u00f3n","raw_affiliation_strings":["Centro Andaluz de Biologia del Desarrollo (CABD, UPO-CSIC-JA). Facultad de Ciencias Experimentales (\u00c1rea de Gen\u00e9tica), Universidad Pablo de Olavide, 41013, Sevilla, Spain"],"raw_orcid":"https://orcid.org/0000-0003-4299-7198","affiliations":[{"raw_affiliation_string":"Centro Andaluz de Biologia del Desarrollo (CABD, UPO-CSIC-JA). Facultad de Ciencias Experimentales (\u00c1rea de Gen\u00e9tica), Universidad Pablo de Olavide, 41013, Sevilla, Spain","institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008470429","display_name":"Manuel J. Mu\u00f1oz","orcid":"https://orcid.org/0000-0002-0111-1541"},"institutions":[{"id":"https://openalex.org/I4210111405","display_name":"Centro Andaluz de Biolog\u00eda del Desarrollo","ror":"https://ror.org/01v5e3436","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210111405","https://openalex.org/I918821925","https://openalex.org/I95013407"]},{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Manuel J Mu\u00f1oz","raw_affiliation_strings":["Centro Andaluz de Biologia del Desarrollo (CABD, UPO-CSIC-JA). Facultad de Ciencias Experimentales (\u00c1rea de Gen\u00e9tica), Universidad Pablo de Olavide, 41013, Sevilla, Spain"],"raw_orcid":"https://orcid.org/0000-0002-0111-1541","affiliations":[{"raw_affiliation_string":"Centro Andaluz de Biologia del Desarrollo (CABD, UPO-CSIC-JA). Facultad de Ciencias Experimentales (\u00c1rea de Gen\u00e9tica), Universidad Pablo de Olavide, 41013, Sevilla, Spain","institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5029314813"],"corresponding_institution_ids":["https://openalex.org/I4210111405","https://openalex.org/I95013407"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.0242,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.4095811,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"22","issue":"2","first_page":"1038","last_page":"1052"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11668","display_name":"interferon and immune responses","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.7316654920578003},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.6646221876144409},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.6312507390975952},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.614374577999115},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.579688549041748},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5282301902770996},{"id":"https://openalex.org/keywords/2019-20-coronavirus-outbreak","display_name":"2019-20 coronavirus outbreak","score":0.5109790563583374},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5033189654350281},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.460472971200943},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45985063910484314},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4541875123977661},{"id":"https://openalex.org/keywords/host-factors","display_name":"Host factors","score":0.43986788392066956},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2252483069896698},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.21493220329284668},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20680519938468933},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.11298656463623047},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.09269401431083679}],"concepts":[{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.7316654920578003},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.6646221876144409},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.6312507390975952},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.614374577999115},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.579688549041748},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5282301902770996},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.5109790563583374},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5033189654350281},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.460472971200943},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45985063910484314},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4541875123977661},{"id":"https://openalex.org/C3020564189","wikidata":"https://www.wikidata.org/wiki/Q16963978","display_name":"Host factors","level":3,"score":0.43986788392066956},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2252483069896698},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.21493220329284668},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20680519938468933},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.11298656463623047},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.09269401431083679},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007372","descriptor_name":"Interferons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007372","descriptor_name":"Interferons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007372","descriptor_name":"Interferons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015967","descriptor_name":"Gene Expression Regulation, Viral","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015967","descriptor_name":"Gene Expression Regulation, Viral","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015967","descriptor_name":"Gene Expression Regulation, Viral","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaa419","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa419","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/1038/36654739/bbaa419.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33458747","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33458747","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/228222","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/228222","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:pubmedcentral.nih.gov:7929451","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7929451","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaa419","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa419","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/1038/36654739/bbaa419.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8500000238418579}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3124138367.pdf","grobid_xml":"https://content.openalex.org/works/W3124138367.grobid-xml"},"referenced_works_count":95,"referenced_works":["https://openalex.org/W379417089","https://openalex.org/W1544561280","https://openalex.org/W1639583514","https://openalex.org/W1680467481","https://openalex.org/W1966327575","https://openalex.org/W1969923525","https://openalex.org/W1975595673","https://openalex.org/W1978656070","https://openalex.org/W1983985331","https://openalex.org/W1989277387","https://openalex.org/W1989969147","https://openalex.org/W2003798179","https://openalex.org/W2006959049","https://openalex.org/W2014061560","https://openalex.org/W2020909982","https://openalex.org/W2027363067","https://openalex.org/W2036693329","https://openalex.org/W2037130111","https://openalex.org/W2039817228","https://openalex.org/W2040236561","https://openalex.org/W2045362835","https://openalex.org/W2045949302","https://openalex.org/W2053117901","https://openalex.org/W2053186308","https://openalex.org/W2054663906","https://openalex.org/W2063635404","https://openalex.org/W2071138210","https://openalex.org/W2077283045","https://openalex.org/W2078983572","https://openalex.org/W2081598158","https://openalex.org/W2083957171","https://openalex.org/W2091368178","https://openalex.org/W2105149323","https://openalex.org/W2135264287","https://openalex.org/W2140871372","https://openalex.org/W2142130608","https://openalex.org/W2145439831","https://openalex.org/W2155728582","https://openalex.org/W2161409973","https://openalex.org/W2161818718","https://openalex.org/W2166617377","https://openalex.org/W2312170576","https://openalex.org/W2416569243","https://openalex.org/W2460946499","https://openalex.org/W2491014331","https://openalex.org/W2520543291","https://openalex.org/W2556513628","https://openalex.org/W2559588208","https://openalex.org/W2766858605","https://openalex.org/W2802376483","https://openalex.org/W2803748520","https://openalex.org/W2804913968","https://openalex.org/W2821700122","https://openalex.org/W2898321887","https://openalex.org/W2918807371","https://openalex.org/W2921796582","https://openalex.org/W2953275535","https://openalex.org/W2982521190","https://openalex.org/W3001118548","https://openalex.org/W3004124734","https://openalex.org/W3004280078","https://openalex.org/W3005409321","https://openalex.org/W3009912996","https://openalex.org/W3011072970","https://openalex.org/W3011134208","https://openalex.org/W3011230498","https://openalex.org/W3011483298","https://openalex.org/W3011792889","https://openalex.org/W3013093478","https://openalex.org/W3014712943","https://openalex.org/W3016288338","https://openalex.org/W3016489853","https://openalex.org/W3022285953","https://openalex.org/W3026002191","https://openalex.org/W3026685590","https://openalex.org/W3033259606","https://openalex.org/W3034332309","https://openalex.org/W3034808847","https://openalex.org/W3036514752","https://openalex.org/W3041348343","https://openalex.org/W3043427328","https://openalex.org/W3045857107","https://openalex.org/W3094419073","https://openalex.org/W3110571029","https://openalex.org/W3125942575","https://openalex.org/W3211402536","https://openalex.org/W4231254854","https://openalex.org/W6644971664","https://openalex.org/W6769775530","https://openalex.org/W6775263357","https://openalex.org/W6775445352","https://openalex.org/W6776952877","https://openalex.org/W6779115729","https://openalex.org/W6779471390","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W2136376327","https://openalex.org/W4238724751","https://openalex.org/W4231720940","https://openalex.org/W2117112636","https://openalex.org/W4300450115","https://openalex.org/W2331175590","https://openalex.org/W4394077836","https://openalex.org/W4241503188","https://openalex.org/W2046003645","https://openalex.org/W343530795"],"abstract_inverted_index":{"The":[0,129],"current":[1],"genomics":[2],"era":[3],"is":[4,53,139],"bringing":[5],"an":[6,111,140],"unprecedented":[7],"growth":[8,21],"in":[9,24,125,171,176,234],"the":[10,19,27,33,54,57,149,172,177,247],"amount":[11],"of":[12,22,35,41,49,56,66,83,95,151,180,209,230,250],"gene":[13,62,92],"expression":[14,58,87,249],"data,":[15],"only":[16],"comparable":[17],"to":[18,44,117,142,148,203,245],"exponential":[20],"sequences":[23],"databases":[25],"during":[26],"last":[28],"decades.":[29],"This":[30],"data":[31,152],"allow":[32],"design":[34],"secondary":[36],"analyses":[37,52],"that":[38,105,153,239],"take":[39],"advantage":[40],"this":[42,74,144,207],"information":[43],"create":[45],"new":[46],"knowledge.":[47],"One":[48],"these":[50],"feasible":[51],"evaluation":[55],"level":[59],"for":[60,89,161,185],"a":[61,64,90,108,228],"through":[63],"series":[65,229],"different":[67],"conditions":[68],"or":[69,110],"cell":[70],"types.":[71],"Based":[72],"on":[73],"idea,":[75],"we":[76,165],"have":[77,166,192],"developed":[78],"Automatic":[79],"and":[80,97,101,121,183,236],"Serial":[81],"Analysis":[82],"CO-expression,":[84],"which":[85,157],"performs":[86],"profiles":[88],"given":[91],"along":[93],"hundreds":[94],"heterogeneous":[96],"normalized":[98],"transcriptomics":[99],"experiments":[100],"discover":[102,118],"other":[103],"genes":[104,186,196,210],"show":[106],"either":[107],"similar":[109],"inverse":[112],"behavior.":[113],"It":[114],"might":[115,240],"help":[116],"co-regulated":[119],"genes,":[120],"common":[122,231],"transcriptional":[123],"regulators":[124],"any":[126],"biological":[127],"model.":[128],"present":[130],"severe":[131],"acute":[132],"respiratory":[133],"syndrome":[134],"coronavirus":[135],"2":[136],"(SARS-CoV-2)":[137],"pandemic":[138],"opportunity":[141],"test":[143],"novel":[145],"approach":[146],"due":[147],"wealth":[150],"are":[154,200],"being":[155],"generated,":[156],"could":[158],"be":[159,241],"used":[160],"validating":[162],"results.":[163],"Thus,":[164],"identified":[167,215],"35":[168],"host":[169,252],"factors":[170],"literature":[173],"putatively":[174],"involved":[175,233],"infectious":[178],"cycle":[179],"SARS-CoV":[181],"viruses":[182],"searched":[184],"tightly":[187],"co-expressed":[188,195],"with":[189,213],"them.":[190],"We":[191],"found":[193],"1899":[194],"whose":[197],"assigned":[198],"functions":[199],"strongly":[201],"related":[202],"viral":[204],"cycles.":[205],"Moreover,":[206],"set":[208],"heavily":[211],"overlaps":[212],"those":[214],"by":[216],"former":[217],"laboratory":[218],"high-throughput":[219],"screenings":[220],"(with":[221],"P-value":[222],"near":[223],"0).":[224],"Our":[225],"results":[226],"reveal":[227],"regulators,":[232],"immune":[235],"inflammatory":[237],"responses":[238],"key":[242],"virus":[243],"targets":[244],"induce":[246],"coordinated":[248],"SARS-CoV-2":[251],"factors.":[253]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-25T15:57:00.446498","created_date":"2025-10-10T00:00:00"}
