{"id":"https://openalex.org/W3121499011","doi":"https://doi.org/10.1093/bib/bbaa402","title":"MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data","display_name":"MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data","publication_year":2020,"publication_date":"2020-12-10","ids":{"openalex":"https://openalex.org/W3121499011","doi":"https://doi.org/10.1093/bib/bbaa402","mag":"3121499011","pmid":"https://pubmed.ncbi.nlm.nih.gov/33461213"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa402","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa402","pdf_url":"https://academic.oup.com/bib/article-pdf/22/5/bbaa402/40327938/bbaa402.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/22/5/bbaa402/40327938/bbaa402.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086014646","display_name":"Xinyin Han","orcid":"https://orcid.org/0000-0001-8871-4689"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinyin Han","raw_affiliation_strings":["Computer Network Information Center, Chinese Academy of Sciences, Beijing 100190, China","University of the Chinese Academy of Sciences, Beijing 100190, China"],"raw_orcid":"https://orcid.org/0000-0001-8871-4689","affiliations":[{"raw_affiliation_string":"Computer Network Information Center, Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of the Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101927831","display_name":"Shuying Zhang","orcid":"https://orcid.org/0000-0001-5620-1782"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuying Zhang","raw_affiliation_strings":["Computer Network Information Center, Chinese Academy of Sciences, Beijing 100190, China","University of the Chinese Academy of Sciences, Beijing 100190, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Network Information Center, Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of the Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068539742","display_name":"Daniel Cui Zhou","orcid":"https://orcid.org/0000-0002-7834-2778"},"institutions":[{"id":"https://openalex.org/I114277686","display_name":"James S. McDonnell Foundation","ror":"https://ror.org/03dy4aq19","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I114277686"]},{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Cui Zhou","raw_affiliation_strings":["Department of Medicine, Washington University in St. Louis, St. Louis, MO 63108, USA","McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Washington University in St. Louis, St. Louis, MO 63108, USA","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA","institution_ids":["https://openalex.org/I114277686","https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100689761","display_name":"Dongliang Wang","orcid":"https://orcid.org/0000-0003-4713-3516"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dongliang Wang","raw_affiliation_strings":["ChosenMed Technology (Beijing) Co., Ltd., Beijing 100176, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ChosenMed Technology (Beijing) Co., Ltd., Beijing 100176, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101913385","display_name":"Xiaoyu He","orcid":"https://orcid.org/0000-0002-5481-2763"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyu He","raw_affiliation_strings":["Computer Network Information Center, Chinese Academy of Sciences, Beijing 100190, China","University of the Chinese Academy of Sciences, Beijing 100190, China"],"raw_orcid":"https://orcid.org/0000-0002-5481-2763","affiliations":[{"raw_affiliation_string":"Computer Network Information Center, Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of the Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016254202","display_name":"Dan\u2010Yang Yuan","orcid":"https://orcid.org/0000-0003-3487-9132"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Danyang Yuan","raw_affiliation_strings":["Computer Network Information Center, Chinese Academy of Sciences, Beijing 100190, China","University of the Chinese Academy of Sciences, Beijing 100190, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Network Information Center, Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of the Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046581897","display_name":"Ruilin Li","orcid":"https://orcid.org/0000-0001-9593-1235"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruilin Li","raw_affiliation_strings":["Computer Network Information Center, Chinese Academy of Sciences, Beijing 100190, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Network Information Center, Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023261768","display_name":"Jiayin He","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiayin He","raw_affiliation_strings":["Computer Network Information Center, Chinese Academy of Sciences, Beijing 100190, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Network Information Center, Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065997930","display_name":"Xiaohong Duan","orcid":"https://orcid.org/0000-0002-6747-1734"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xiaohong Duan","raw_affiliation_strings":["ChosenMed Technology (Beijing) Co., Ltd., Beijing 100176, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ChosenMed Technology (Beijing) Co., Ltd., Beijing 100176, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033154286","display_name":"Michael C. Wendl","orcid":"https://orcid.org/0000-0002-5694-2668"},"institutions":[{"id":"https://openalex.org/I114277686","display_name":"James S. McDonnell Foundation","ror":"https://ror.org/03dy4aq19","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I114277686"]},{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael C Wendl","raw_affiliation_strings":["Department of Genetics, Washington University in St. Louis, St. Louis, MO 63108, USA","Department of Mathematics, Washington University in St. Louis, St. Louis, MO 63108, USA","McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Washington University in St. Louis, St. Louis, MO 63108, USA","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"Department of Mathematics, Washington University in St. Louis, St. Louis, MO 63108, USA","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA","institution_ids":["https://openalex.org/I114277686","https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100449520","display_name":"Li Ding","orcid":"https://orcid.org/0000-0003-1517-2975"},"institutions":[{"id":"https://openalex.org/I114277686","display_name":"James S. McDonnell Foundation","ror":"https://ror.org/03dy4aq19","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I114277686"]},{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Li Ding","raw_affiliation_strings":["Department of Genetics, Washington University in St. Louis, St. Louis, MO 63108, USA","Department of Medicine, Washington University in St. Louis, St. Louis, MO 63108, USA","McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA","Siteman Cancer Center, Washington University in St. Louis, St. Louis, MO 63108, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Washington University in St. Louis, St. Louis, MO 63108, USA","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"Department of Medicine, Washington University in St. Louis, St. Louis, MO 63108, USA","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"McDonnell Genome Institute, Washington University in St. Louis, St. Louis, MO 63108, USA","institution_ids":["https://openalex.org/I114277686","https://openalex.org/I204465549"]},{"raw_affiliation_string":"Siteman Cancer Center, Washington University in St. Louis, St. Louis, MO 63108, USA","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008702128","display_name":"Beifang Niu","orcid":"https://orcid.org/0000-0002-7448-7793"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Beifang Niu","raw_affiliation_strings":["ChosenMed Technology (Beijing) Co., Ltd., Beijing 100176, China","Computer Network Information Center, Chinese Academy of Sciences, Beijing 100190, China","University of the Chinese Academy of Sciences, Beijing 100190, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ChosenMed Technology (Beijing) Co., Ltd., Beijing 100176, China","institution_ids":[]},{"raw_affiliation_string":"Computer Network Information Center, Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of the Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210165038"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5008702128","https://openalex.org/A5100449520"],"corresponding_institution_ids":["https://openalex.org/I114277686","https://openalex.org/I19820366","https://openalex.org/I204465549","https://openalex.org/I4210108629","https://openalex.org/I4210165038"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.3542,"has_fulltext":true,"cited_by_count":33,"citation_normalized_percentile":{"value":0.80090303,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"22","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9545000195503235,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9545000195503235,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11369","display_name":"Genetic factors in colorectal cancer","score":0.030700000002980232,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10336","display_name":"Cancer Cells and Metastasis","score":0.004600000102072954,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microsatellite-instability","display_name":"Microsatellite instability","score":0.8166519403457642},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.6110964417457581},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5443488955497742},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4578680992126465},{"id":"https://openalex.org/keywords/circulating-tumor-dna","display_name":"Circulating tumor DNA","score":0.4471901059150696},{"id":"https://openalex.org/keywords/microsatellite","display_name":"Microsatellite","score":0.3853425979614258},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.2687166929244995},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.2588421404361725},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21836692094802856},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20017081499099731},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.13260668516159058},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11418583989143372},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09881788492202759}],"concepts":[{"id":"https://openalex.org/C2779767149","wikidata":"https://www.wikidata.org/wiki/Q488212","display_name":"Microsatellite instability","level":5,"score":0.8166519403457642},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.6110964417457581},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5443488955497742},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4578680992126465},{"id":"https://openalex.org/C2781335228","wikidata":"https://www.wikidata.org/wiki/Q19596321","display_name":"Circulating tumor DNA","level":3,"score":0.4471901059150696},{"id":"https://openalex.org/C61320498","wikidata":"https://www.wikidata.org/wiki/Q265193","display_name":"Microsatellite","level":4,"score":0.3853425979614258},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.2687166929244995},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.2588421404361725},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21836692094802856},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20017081499099731},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.13260668516159058},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11418583989143372},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09881788492202759},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000074141","descriptor_name":"Circulating Tumor DNA","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D000074141","descriptor_name":"Circulating Tumor DNA","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D000074141","descriptor_name":"Circulating Tumor DNA","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D000074141","descriptor_name":"Circulating Tumor DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000074141","descriptor_name":"Circulating Tumor DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000074141","descriptor_name":"Circulating Tumor DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000097","qualifier_name":"blood","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053842","descriptor_name":"Microsatellite Instability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053842","descriptor_name":"Microsatellite Instability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053842","descriptor_name":"Microsatellite Instability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057230","descriptor_name":"Limit of Detection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057230","descriptor_name":"Limit of Detection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057230","descriptor_name":"Limit of Detection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaa402","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa402","pdf_url":"https://academic.oup.com/bib/article-pdf/22/5/bbaa402/40327938/bbaa402.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33461213","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33461213","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:digitalcommons.wustl.edu:oa_4-1915","is_oa":true,"landing_page_url":"https://digitalcommons.wustl.edu/oa_4/920","pdf_url":null,"source":{"id":"https://openalex.org/S4306400764","display_name":"Digital Commons@Becker (Washington University School of Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I204465549","host_organization_name":"Washington University in St. Louis","host_organization_lineage":["https://openalex.org/I204465549"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2020-Current year OA Pubs","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8424396","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8424396","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaa402","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa402","pdf_url":"https://academic.oup.com/bib/article-pdf/22/5/bbaa402/40327938/bbaa402.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1465109388","display_name":null,"funder_award_id":"31771466","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4588036837","display_name":null,"funder_award_id":"XXH13506","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G6328358443","display_name":null,"funder_award_id":"XXH13506-408","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G7887253607","display_name":null,"funder_award_id":"XXH13506\u2013408","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G8417351188","display_name":null,"funder_award_id":"XDB38040100","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G845935914","display_name":null,"funder_award_id":"XXH13506","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3121499011.pdf","grobid_xml":"https://content.openalex.org/works/W3121499011.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W122085203","https://openalex.org/W1504535992","https://openalex.org/W1893792948","https://openalex.org/W1926715094","https://openalex.org/W1969637146","https://openalex.org/W1986998057","https://openalex.org/W2040548043","https://openalex.org/W2044643325","https://openalex.org/W2050658928","https://openalex.org/W2051781903","https://openalex.org/W2057253402","https://openalex.org/W2082040301","https://openalex.org/W2100942517","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2110065044","https://openalex.org/W2112421940","https://openalex.org/W2117564738","https://openalex.org/W2119180969","https://openalex.org/W2128793721","https://openalex.org/W2156021518","https://openalex.org/W2163553106","https://openalex.org/W2227908622","https://openalex.org/W2287918349","https://openalex.org/W2321950020","https://openalex.org/W2323851578","https://openalex.org/W2561075927","https://openalex.org/W2567051070","https://openalex.org/W2608799023","https://openalex.org/W2730259699","https://openalex.org/W2760942750","https://openalex.org/W2763731807","https://openalex.org/W2792694005","https://openalex.org/W2890455805","https://openalex.org/W2902776040","https://openalex.org/W2915944698","https://openalex.org/W2920863623","https://openalex.org/W2951423138","https://openalex.org/W2965346296","https://openalex.org/W2966521813","https://openalex.org/W2981482619","https://openalex.org/W2986047755","https://openalex.org/W2990870977","https://openalex.org/W2996355160","https://openalex.org/W2998394307","https://openalex.org/W3010653800","https://openalex.org/W3013252693","https://openalex.org/W3025991338","https://openalex.org/W3038083597","https://openalex.org/W3084246142","https://openalex.org/W6771959616"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2412807156","https://openalex.org/W2081783593","https://openalex.org/W2029130118","https://openalex.org/W2067665082","https://openalex.org/W2473005840","https://openalex.org/W2969016060","https://openalex.org/W1982747239","https://openalex.org/W4389733843","https://openalex.org/W2990322712"],"abstract_inverted_index":{"MOTIVATION:":[0],"Microsatellite":[1],"instability":[2],"(MSI)":[3],"is":[4,144],"a":[5,56,65,70,84],"promising":[6],"biomarker":[7],"for":[8,17],"cancer":[9],"prognosis":[10],"and":[11,106,132],"chemosensitivity.":[12],"Techniques":[13],"are":[14,32,153],"rapidly":[15],"evolving":[16],"the":[18,45,113],"detection":[19,59,116],"of":[20,48,89,92,101,115,118],"MSI":[21,58,77],"from":[22],"tumor-normal":[23],"paired":[24],"or":[25,36],"tumor-only":[26],"sequencing":[27,81,107,138],"data.":[28],"However,":[29],"tumor":[30,103],"tissues":[31],"often":[33],"insufficient,":[34],"unavailable,":[35],"otherwise":[37],"difficult":[38],"to":[39,75],"procure.":[40],"Increasing":[41],"clinical":[42],"evidence":[43],"indicates":[44],"enormous":[46],"potential":[47,85],"plasma":[49],"circulating":[50,102],"cell-free":[51],"DNA":[52,104],"(cfNDA)":[53],"technology":[54],"as":[55,127],"noninvasive":[57],"approach.":[60],"RESULTS:":[61],"We":[62],"developed":[63],"MSIsensor-ct,":[64],"bioinformatics":[66],"tool":[67],"based":[68],"on":[69,94],"machine":[71],"learning":[72],"protocol,":[73],"dedicated":[74],"detecting":[76],"status":[78],"using":[79],"cfDNA":[80],"data":[82,152],"with":[83,98],"stable":[86],"MSIscore":[87],"threshold":[88],"20%.":[90],"Evaluation":[91],"MSIsensor-ct":[93,122,143],"independent":[95],"testing":[96],"datasets":[97],"various":[99],"levels":[100],"(ctDNA)":[105],"depth":[108],"showed":[109],"100%":[110],"accuracy":[111],"within":[112],"limit":[114],"(LOD)":[117],"0.05%":[119],"ctDNA":[120],"content.":[121],"requires":[123],"only":[124],"BAM":[125],"files":[126],"input,":[128],"rendering":[129],"it":[130],"user-friendly":[131],"readily":[133],"integrated":[134],"into":[135],"next":[136],"generation":[137],"(NGS)":[139],"analysis":[140],"pipelines.":[141],"AVAILABILITY:":[142],"freely":[145],"available":[146,154],"at":[147,155],"https://github.com/niu-lab/MSIsensor-ct.":[148],"SUPPLEMENTARY":[149],"INFORMATION:":[150],"Supplementary":[151],"Briefings":[156],"in":[157],"Bioinformatics":[158],"online.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
