{"id":"https://openalex.org/W3117326807","doi":"https://doi.org/10.1093/bib/bbaa390","title":"The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling","display_name":"The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling","publication_year":2020,"publication_date":"2020-12-02","ids":{"openalex":"https://openalex.org/W3117326807","doi":"https://doi.org/10.1093/bib/bbaa390","mag":"3117326807","pmid":"https://pubmed.ncbi.nlm.nih.gov/33378765"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa390","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa390","pdf_url":"https://academic.oup.com/bib/article-pdf/22/4/bbaa390/39165031/bbaa390.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/22/4/bbaa390/39165031/bbaa390.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019876939","display_name":"Vasundra Tour\u00e9","orcid":"https://orcid.org/0000-0003-4639-4431"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Vasundra Tour\u00e9","raw_affiliation_strings":["Department of Biology of the Norwegian University of Science and Technology","NTNU - Norwegian University of Science and Technology [Trondheim] (NO-7491 Trondheim - Norway)"],"affiliations":[{"raw_affiliation_string":"Department of Biology of the Norwegian University of Science and Technology","institution_ids":[]},{"raw_affiliation_string":"NTNU - Norwegian University of Science and Technology [Trondheim] (NO-7491 Trondheim - Norway)","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011858469","display_name":"\u00c5smund Flobak","orcid":"https://orcid.org/0000-0002-3357-425X"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"\u00c5smund Flobak","raw_affiliation_strings":["Residential Oncologist and an Associate Professor","NTNU - Norwegian University of Science and Technology [Trondheim] (NO-7491 Trondheim - Norway)"],"affiliations":[{"raw_affiliation_string":"Residential Oncologist and an Associate Professor","institution_ids":[]},{"raw_affiliation_string":"NTNU - Norwegian University of Science and Technology [Trondheim] (NO-7491 Trondheim - Norway)","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050740875","display_name":"Anna Niarakis","orcid":"https://orcid.org/0000-0002-9687-7426"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210128926","display_name":"Genopole (France)","ror":"https://ror.org/0380k9k47","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210128926"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anna Niarakis","raw_affiliation_strings":["Department of Biology, Univ Evry, University of Paris-Saclay, affiliated with the laboratory GenHotel in Genopole campus, and a delegate at the Lifeware Group, INRIA Saclay"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Univ Evry, University of Paris-Saclay, affiliated with the laboratory GenHotel in Genopole campus, and a delegate at the Lifeware Group, INRIA Saclay","institution_ids":["https://openalex.org/I4210128926","https://openalex.org/I1326498283","https://openalex.org/I277688954"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029941306","display_name":"Steven Vercruysse","orcid":"https://orcid.org/0000-0002-3136-7353"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Steven Vercruysse","raw_affiliation_strings":["Researcher in computer science and computational biology and focuses on building a bridge between human and computer understanding","NTNU - Norwegian University of Science and Technology [Trondheim] (NO-7491 Trondheim - Norway)"],"affiliations":[{"raw_affiliation_string":"Researcher in computer science and computational biology and focuses on building a bridge between human and computer understanding","institution_ids":[]},{"raw_affiliation_string":"NTNU - Norwegian University of Science and Technology [Trondheim] (NO-7491 Trondheim - Norway)","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077915624","display_name":"Martin Kuiper","orcid":"https://orcid.org/0000-0002-1171-9876"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Martin Kuiper","raw_affiliation_strings":["systems biology at the Department of Biology of the Norwegian University of Science and Technology"],"affiliations":[{"raw_affiliation_string":"systems biology at the Department of Biology of the Norwegian University of Science and Technology","institution_ids":["https://openalex.org/I204778367"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5019876939"],"corresponding_institution_ids":["https://openalex.org/I204778367"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.5018,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.8280642,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"22","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.8048874139785767},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7385188341140747},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.6120814085006714},{"id":"https://openalex.org/keywords/causality","display_name":"Causality (physics)","score":0.5622279047966003},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5327577590942383},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.523701548576355},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5159871578216553},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.49991416931152344},{"id":"https://openalex.org/keywords/causal-model","display_name":"Causal model","score":0.4539577066898346},{"id":"https://openalex.org/keywords/data-model","display_name":"Data model (GIS)","score":0.42452383041381836},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4221433103084564},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1974116861820221},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.16799649596214294},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.12395480275154114}],"concepts":[{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.8048874139785767},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7385188341140747},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.6120814085006714},{"id":"https://openalex.org/C64357122","wikidata":"https://www.wikidata.org/wiki/Q1149766","display_name":"Causality (physics)","level":2,"score":0.5622279047966003},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5327577590942383},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.523701548576355},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5159871578216553},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.49991416931152344},{"id":"https://openalex.org/C11671645","wikidata":"https://www.wikidata.org/wiki/Q5054567","display_name":"Causal model","level":2,"score":0.4539577066898346},{"id":"https://openalex.org/C100463513","wikidata":"https://www.wikidata.org/wiki/Q5227322","display_name":"Data model (GIS)","level":2,"score":0.42452383041381836},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4221433103084564},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1974116861820221},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.16799649596214294},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.12395480275154114},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaa390","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa390","pdf_url":"https://academic.oup.com/bib/article-pdf/22/4/bbaa390/39165031/bbaa390.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33378765","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33378765","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8294520","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8294520","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-03105365v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03105365","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics, 2020, pp.bbaa390. &#x27E8;10.1093/bib/bbaa390&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaa390","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa390","pdf_url":"https://academic.oup.com/bib/article-pdf/22/4/bbaa390/39165031/bbaa390.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3117326807.pdf","grobid_xml":"https://content.openalex.org/works/W3117326807.grobid-xml"},"referenced_works_count":119,"referenced_works":["https://openalex.org/W893557411","https://openalex.org/W1270834676","https://openalex.org/W1270845237","https://openalex.org/W1487060125","https://openalex.org/W1871096589","https://openalex.org/W1894267660","https://openalex.org/W1961098424","https://openalex.org/W1969709265","https://openalex.org/W1989277387","https://openalex.org/W1989842786","https://openalex.org/W1992153998","https://openalex.org/W1995576455","https://openalex.org/W2000982470","https://openalex.org/W2012530222","https://openalex.org/W2023250031","https://openalex.org/W2026759723","https://openalex.org/W2031249692","https://openalex.org/W2031369606","https://openalex.org/W2054801326","https://openalex.org/W2055222843","https://openalex.org/W2065782501","https://openalex.org/W2068101181","https://openalex.org/W2069157810","https://openalex.org/W2069233518","https://openalex.org/W2073903631","https://openalex.org/W2093521183","https://openalex.org/W2099182605","https://openalex.org/W2103017472","https://openalex.org/W2103454055","https://openalex.org/W2105325784","https://openalex.org/W2117364474","https://openalex.org/W2120890012","https://openalex.org/W2125984976","https://openalex.org/W2126997165","https://openalex.org/W2129325583","https://openalex.org/W2130810176","https://openalex.org/W2136765349","https://openalex.org/W2150908245","https://openalex.org/W2151852639","https://openalex.org/W2154268795","https://openalex.org/W2160196028","https://openalex.org/W2161636210","https://openalex.org/W2163296115","https://openalex.org/W2163411228","https://openalex.org/W2163993275","https://openalex.org/W2165253681","https://openalex.org/W2165685472","https://openalex.org/W2166164789","https://openalex.org/W2167437179","https://openalex.org/W2168223461","https://openalex.org/W2178639092","https://openalex.org/W2271556966","https://openalex.org/W2275697218","https://openalex.org/W2323768954","https://openalex.org/W2523314419","https://openalex.org/W2525035644","https://openalex.org/W2542446037","https://openalex.org/W2544038273","https://openalex.org/W2557833574","https://openalex.org/W2559588208","https://openalex.org/W2584343725","https://openalex.org/W2621589069","https://openalex.org/W2728797067","https://openalex.org/W2751436602","https://openalex.org/W2762853387","https://openalex.org/W2766482558","https://openalex.org/W2767914218","https://openalex.org/W2773952620","https://openalex.org/W2790682049","https://openalex.org/W2792322849","https://openalex.org/W2807615161","https://openalex.org/W2809387150","https://openalex.org/W2886008944","https://openalex.org/W2917101543","https://openalex.org/W2937662482","https://openalex.org/W2944187445","https://openalex.org/W2944676386","https://openalex.org/W2950329335","https://openalex.org/W2951846550","https://openalex.org/W2952583574","https://openalex.org/W2973232653","https://openalex.org/W2981350712","https://openalex.org/W2982368177","https://openalex.org/W2982461378","https://openalex.org/W2983166786","https://openalex.org/W2986455832","https://openalex.org/W2988361147","https://openalex.org/W2993323702","https://openalex.org/W2997551827","https://openalex.org/W2999321803","https://openalex.org/W3004350479","https://openalex.org/W3007289092","https://openalex.org/W3013993136","https://openalex.org/W3016336210","https://openalex.org/W3018124194","https://openalex.org/W3018688604","https://openalex.org/W3021219695","https://openalex.org/W3025361835","https://openalex.org/W3080133182","https://openalex.org/W3081676766","https://openalex.org/W3082216319","https://openalex.org/W3098424114","https://openalex.org/W3099289621","https://openalex.org/W3122515804","https://openalex.org/W3136918052","https://openalex.org/W3163501683","https://openalex.org/W4229527776","https://openalex.org/W4231254854","https://openalex.org/W6629025635","https://openalex.org/W6747185876","https://openalex.org/W6748882314","https://openalex.org/W6762600656","https://openalex.org/W6763975222","https://openalex.org/W6768806997","https://openalex.org/W6770440696","https://openalex.org/W6770460946","https://openalex.org/W6773824581","https://openalex.org/W6776091384","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W2018580387","https://openalex.org/W4312269093","https://openalex.org/W4381571608","https://openalex.org/W3170261037","https://openalex.org/W3135588948","https://openalex.org/W4392894140","https://openalex.org/W2987568073","https://openalex.org/W2936116675","https://openalex.org/W2574301230","https://openalex.org/W2291027050"],"abstract_inverted_index":{"Causal":[0],"molecular":[1,74,169,185],"interactions":[2,43],"represent":[3],"key":[4],"building":[5],"blocks":[6],"used":[7,24],"in":[8,35,46,168],"computational":[9],"modeling,":[10],"where":[11],"they":[12,123,129],"facilitate":[13],"the":[14,64,102,107,116,125,137,158,179,189],"assembly":[15],"of":[16,41,49,66,86,93,101,110,183,191],"regulatory":[17,20],"networks.":[18],"Logical":[19],"networks":[21],"can":[22,77],"be":[23,79],"to":[25,63,69,81,146,195],"predict":[26],"biological":[27,50,59,120],"and":[28,34,71,89,134,136,140,148,164,176,181,188,193],"cellular":[29],"behaviors":[30],"by":[31],"system":[32],"perturbations":[33],"silico":[36],"simulations.":[37],"Today,":[38],"broad":[39],"sets":[40],"causal":[42,73,87,114,170,184],"are":[44,144],"available":[45,145],"a":[47],"variety":[48,182,190],"knowledge":[51],"resources.":[52],"However,":[53],"different":[54,108,117],"visions,":[55],"based":[56],"on":[57,119],"distinct":[58],"interests,":[60],"have":[61],"led":[62],"development":[65],"multiple":[67],"ways":[68],"describe":[70],"annotate":[72],"interactions.":[75,151],"It":[76],"therefore":[78],"challenging":[80],"efficiently":[82],"explore":[83],"various":[84,126],"resources":[85,112],"interaction":[88,186],"maintain":[90],"an":[91],"overview":[92],"recorded":[94],"contextual":[95],"information":[96],"that":[97,122,143],"ensures":[98],"valid":[99],"use":[100,130],"data.":[103],"This":[104,152],"review":[105],"lists":[106],"types":[109],"public":[111],"with":[113],"interactions,":[115,171],"views":[118],"processes":[121],"represent,":[124],"data":[127,132,138],"formats":[128],"for":[131],"representation":[133],"storage,":[135],"exchange":[139],"conversion":[141],"procedures":[142],"extract":[147],"download":[149],"these":[150],"may":[153],"further":[154],"raise":[155],"awareness":[156],"among":[157],"targeted":[159],"audience,":[160],"i.e.":[161],"logical":[162],"modelers":[163],"other":[165],"scientists":[166],"interested":[167],"but":[172],"also":[173],"database":[174],"managers":[175],"curators,":[177],"about":[178],"abundance":[180],"data,":[187],"tools":[192],"approaches":[194],"convert":[196],"them":[197],"into":[198],"one":[199],"interoperable":[200],"resource.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":4}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
