{"id":"https://openalex.org/W3114897634","doi":"https://doi.org/10.1093/bib/bbaa362","title":"The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies","display_name":"The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies","publication_year":2020,"publication_date":"2020-11-11","ids":{"openalex":"https://openalex.org/W3114897634","doi":"https://doi.org/10.1093/bib/bbaa362","mag":"3114897634","pmid":"https://pubmed.ncbi.nlm.nih.gov/33348379"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa362","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa362","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/742/36654791/bbaa362.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/22/2/742/36654791/bbaa362.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038514035","display_name":"Vaishali Waman","orcid":"https://orcid.org/0000-0001-5627-8827"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vaishali P Waman","raw_affiliation_strings":["Orengo group, UCL"],"affiliations":[{"raw_affiliation_string":"Orengo group, UCL","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036599989","display_name":"Neeladri Sen","orcid":"https://orcid.org/0000-0002-3324-5755"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Neeladri Sen","raw_affiliation_strings":["Orengo group, UCL"],"affiliations":[{"raw_affiliation_string":"Orengo group, UCL","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054254768","display_name":"Mih\u00e1ly V\u00e1radi","orcid":"https://orcid.org/0000-0002-3687-0839"},"institutions":[{"id":"https://openalex.org/I4388482661","display_name":"Worldwide Protein Data Bank","ror":"https://ror.org/047qy5748","country_code":null,"type":"archive","lineage":["https://openalex.org/I4388482661"]}],"countries":[],"is_corresponding":false,"raw_author_name":"Mihaly Varadi","raw_affiliation_strings":["Protein Data Bank in Europe\u2014Knowledge Base"],"affiliations":[{"raw_affiliation_string":"Protein Data Bank in Europe\u2014Knowledge Base","institution_ids":["https://openalex.org/I4388482661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088300158","display_name":"Antoine Daina","orcid":"https://orcid.org/0000-0002-0074-7601"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Antoine Daina","raw_affiliation_strings":["Molecular Modeling Group at SIB, Swiss Institute of Bioinformatics"],"affiliations":[{"raw_affiliation_string":"Molecular Modeling Group at SIB, Swiss Institute of Bioinformatics","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074905519","display_name":"Shoshana J. Wodak","orcid":"https://orcid.org/0000-0002-0701-6545"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shoshana J Wodak","raw_affiliation_strings":["Columbia University, USA"],"affiliations":[{"raw_affiliation_string":"Columbia University, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049236772","display_name":"Vincent Zoete","orcid":"https://orcid.org/0000-0002-2336-6537"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vincent Zoete","raw_affiliation_strings":["Department of Fundamental Oncology at the University of Lausanne and Group leader at SIB"],"affiliations":[{"raw_affiliation_string":"Department of Fundamental Oncology at the University of Lausanne and Group leader at SIB","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042460017","display_name":"Sameer Velankar","orcid":"https://orcid.org/0000-0002-8439-5964"},"institutions":[{"id":"https://openalex.org/I4388482661","display_name":"Worldwide Protein Data Bank","ror":"https://ror.org/047qy5748","country_code":null,"type":"archive","lineage":["https://openalex.org/I4388482661"]}],"countries":[],"is_corresponding":false,"raw_author_name":"Sameer Velankar","raw_affiliation_strings":["Protein Data Bank in Europe"],"affiliations":[{"raw_affiliation_string":"Protein Data Bank in Europe","institution_ids":["https://openalex.org/I4388482661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081250379","display_name":"Christine Orengo","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Christine Orengo","raw_affiliation_strings":["University College London"],"affiliations":[{"raw_affiliation_string":"University College London","institution_ids":["https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5081250379"],"corresponding_institution_ids":["https://openalex.org/I45129253"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.8945,"has_fulltext":true,"cited_by_count":48,"citation_normalized_percentile":{"value":0.85691096,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"22","issue":"2","first_page":"742","last_page":"768"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.6402565836906433},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6306753754615784},{"id":"https://openalex.org/keywords/structural-bioinformatics","display_name":"Structural bioinformatics","score":0.6001018285751343},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.5785265564918518},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.48292800784111023},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.46358582377433777},{"id":"https://openalex.org/keywords/drug-development","display_name":"Drug development","score":0.4607807695865631},{"id":"https://openalex.org/keywords/pandemic","display_name":"Pandemic","score":0.44605520367622375},{"id":"https://openalex.org/keywords/infectivity","display_name":"Infectivity","score":0.4376085102558136},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4102945029735565},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.32108503580093384},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2938667833805084},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.27366214990615845},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.268566370010376},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.2491418421268463},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.21111199259757996},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.16361141204833984},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.09217599034309387}],"concepts":[{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.6402565836906433},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6306753754615784},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.6001018285751343},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.5785265564918518},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.48292800784111023},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.46358582377433777},{"id":"https://openalex.org/C64903051","wikidata":"https://www.wikidata.org/wiki/Q2198549","display_name":"Drug development","level":3,"score":0.4607807695865631},{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.44605520367622375},{"id":"https://openalex.org/C106358424","wikidata":"https://www.wikidata.org/wiki/Q1662346","display_name":"Infectivity","level":3,"score":0.4376085102558136},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4102945029735565},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.32108503580093384},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2938667833805084},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.27366214990615845},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.268566370010376},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.2491418421268463},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.21111199259757996},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.16361141204833984},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.09217599034309387},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bib/bbaa362","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa362","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/742/36654791/bbaa362.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33348379","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33348379","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:serval.unil.ch:BIB_C745D183BB85","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_C745D183BB85","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics, vol. 22, no. 2, pp. 742-768","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:iris.unil.ch:iris/210968","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/210968","pdf_url":"https://iris.unil.ch/bitstreams/126c1b46-b73c-4bec-9dfa-dcb0c55a7445/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"review article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:10120255","is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/10120255/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   Briefings in Bioinformatics , 22  (2)   pp. 742-768.   (2021)      ","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:6735179","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7799268","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7799268","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7799268","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaa362","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa362","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/742/36654791/bbaa362.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G5349053378","display_name":null,"funder_award_id":"BB/P024351/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5767990935","display_name":"3D-Gateway - Gateway to protein structure and function","funder_award_id":"BB/S020144/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6067648049","display_name":"FunPDBe - enhancing structural and functional annotation of macromolecular structure data in the PDB by collaboration and integration","funder_award_id":"BB/P024351/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7674564319","display_name":null,"funder_award_id":"BB/S020144/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7882534001","display_name":null,"funder_award_id":"104948","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3114897634.pdf","grobid_xml":"https://content.openalex.org/works/W3114897634.grobid-xml"},"referenced_works_count":234,"referenced_works":["https://openalex.org/W1499963592","https://openalex.org/W1683278196","https://openalex.org/W1834070694","https://openalex.org/W1980481311","https://openalex.org/W1985766774","https://openalex.org/W1993139310","https://openalex.org/W1995808589","https://openalex.org/W1996446367","https://openalex.org/W2013354180","https://openalex.org/W2015115860","https://openalex.org/W2021520922","https://openalex.org/W2024707519","https://openalex.org/W2031071878","https://openalex.org/W2037787858","https://openalex.org/W2043359500","https://openalex.org/W2043620814","https://openalex.org/W2044453886","https://openalex.org/W2048796681","https://openalex.org/W2053538195","https://openalex.org/W2069121350","https://openalex.org/W2073798474","https://openalex.org/W2081719521","https://openalex.org/W2085318243","https://openalex.org/W2097632784","https://openalex.org/W2099866342","https://openalex.org/W2110120447","https://openalex.org/W2110483430","https://openalex.org/W2122732537","https://openalex.org/W2123865099","https://openalex.org/W2125314454","https://openalex.org/W2128674962","https://openalex.org/W2135253885","https://openalex.org/W2137974866","https://openalex.org/W2140673705","https://openalex.org/W2154479185","https://openalex.org/W2154714625","https://openalex.org/W2159614853","https://openalex.org/W2165253681","https://openalex.org/W2170471837","https://openalex.org/W2171419407","https://openalex.org/W2268553027","https://openalex.org/W2284201926","https://openalex.org/W2299689158","https://openalex.org/W2442254562","https://openalex.org/W2520033800","https://openalex.org/W2534288757","https://openalex.org/W2535071049","https://openalex.org/W2543839061","https://openalex.org/W2566883605","https://openalex.org/W2584540405","https://openalex.org/W2590932802","https://openalex.org/W2606943127","https://openalex.org/W2639761662","https://openalex.org/W2737721758","https://openalex.org/W2765284721","https://openalex.org/W2766768874","https://openalex.org/W2783936732","https://openalex.org/W2797356661","https://openalex.org/W2801376357","https://openalex.org/W2804822363","https://openalex.org/W2898210859","https://openalex.org/W2898364362","https://openalex.org/W2898458979","https://openalex.org/W2899664253","https://openalex.org/W2899671967","https://openalex.org/W2900090807","https://openalex.org/W2900359059","https://openalex.org/W2900569176","https://openalex.org/W2900701906","https://openalex.org/W2907126701","https://openalex.org/W2920845725","https://openalex.org/W2921484180","https://openalex.org/W2921565758","https://openalex.org/W2922733835","https://openalex.org/W2944959599","https://openalex.org/W2945403072","https://openalex.org/W2946430181","https://openalex.org/W2947817007","https://openalex.org/W2966057938","https://openalex.org/W2968482999","https://openalex.org/W2978232173","https://openalex.org/W2982977147","https://openalex.org/W2984761660","https://openalex.org/W2987335406","https://openalex.org/W2995461017","https://openalex.org/W2996962756","https://openalex.org/W2997234557","https://openalex.org/W2999044305","https://openalex.org/W3003217347","https://openalex.org/W3003464757","https://openalex.org/W3004762425","https://openalex.org/W3005527412","https://openalex.org/W3005775246","https://openalex.org/W3006013940","https://openalex.org/W3006740903","https://openalex.org/W3007643904","https://openalex.org/W3007886991","https://openalex.org/W3008047170","https://openalex.org/W3009335299","https://openalex.org/W3009906937","https://openalex.org/W3009912996","https://openalex.org/W3010441732","https://openalex.org/W3010719270","https://openalex.org/W3011701533","https://openalex.org/W3012588029","https://openalex.org/W3012919899","https://openalex.org/W3013093478","https://openalex.org/W3013294882","https://openalex.org/W3013533831","https://openalex.org/W3013800395","https://openalex.org/W3013855790","https://openalex.org/W3014067025","https://openalex.org/W3014656992","https://openalex.org/W3014941371","https://openalex.org/W3015037540","https://openalex.org/W3015190630","https://openalex.org/W3015400158","https://openalex.org/W3015435512","https://openalex.org/W3015608194","https://openalex.org/W3016553966","https://openalex.org/W3017559857","https://openalex.org/W3017990560","https://openalex.org/W3018023298","https://openalex.org/W3019998044","https://openalex.org/W3020300207","https://openalex.org/W3020928354","https://openalex.org/W3022285953","https://openalex.org/W3022525784","https://openalex.org/W3022529555","https://openalex.org/W3022734398","https://openalex.org/W3022748398","https://openalex.org/W3023006972","https://openalex.org/W3023376619","https://openalex.org/W3023944583","https://openalex.org/W3024380556","https://openalex.org/W3024735801","https://openalex.org/W3025053074","https://openalex.org/W3025744748","https://openalex.org/W3026361838","https://openalex.org/W3027118920","https://openalex.org/W3027231799","https://openalex.org/W3027690603","https://openalex.org/W3028403453","https://openalex.org/W3029661147","https://openalex.org/W3030308310","https://openalex.org/W3030688226","https://openalex.org/W3031577869","https://openalex.org/W3032355258","https://openalex.org/W3032899997","https://openalex.org/W3033214450","https://openalex.org/W3033364368","https://openalex.org/W3033737840","https://openalex.org/W3034228022","https://openalex.org/W3034330436","https://openalex.org/W3034548712","https://openalex.org/W3034665372","https://openalex.org/W3034880338","https://openalex.org/W3035950190","https://openalex.org/W3036504393","https://openalex.org/W3036607916","https://openalex.org/W3036635817","https://openalex.org/W3036732116","https://openalex.org/W3037669079","https://openalex.org/W3037759458","https://openalex.org/W3037923073","https://openalex.org/W3037984818","https://openalex.org/W3039821298","https://openalex.org/W3039901154","https://openalex.org/W3040464171","https://openalex.org/W3042323010","https://openalex.org/W3042370463","https://openalex.org/W3042376507","https://openalex.org/W3042759890","https://openalex.org/W3042916618","https://openalex.org/W3043431476","https://openalex.org/W3044111306","https://openalex.org/W3044296749","https://openalex.org/W3044676116","https://openalex.org/W3044914269","https://openalex.org/W3045038743","https://openalex.org/W3045161703","https://openalex.org/W3045670190","https://openalex.org/W3046511684","https://openalex.org/W3046992885","https://openalex.org/W3047003416","https://openalex.org/W3047775844","https://openalex.org/W3048714202","https://openalex.org/W3049192460","https://openalex.org/W3058836816","https://openalex.org/W3070027619","https://openalex.org/W3080128212","https://openalex.org/W3080596815","https://openalex.org/W3081089847","https://openalex.org/W3082713933","https://openalex.org/W3084341590","https://openalex.org/W3088579397","https://openalex.org/W3089408777","https://openalex.org/W3089490646","https://openalex.org/W3092125766","https://openalex.org/W3092736134","https://openalex.org/W3092768748","https://openalex.org/W3095497867","https://openalex.org/W3102266411","https://openalex.org/W3104554419","https://openalex.org/W3104701888","https://openalex.org/W3105862670","https://openalex.org/W3109674309","https://openalex.org/W3119119048","https://openalex.org/W3119807775","https://openalex.org/W3129322014","https://openalex.org/W3136918052","https://openalex.org/W3153528761","https://openalex.org/W3165793740","https://openalex.org/W3173635501","https://openalex.org/W4225399870","https://openalex.org/W4231059664","https://openalex.org/W4234714728","https://openalex.org/W4236002973","https://openalex.org/W4287827588","https://openalex.org/W6718286339","https://openalex.org/W6756159679","https://openalex.org/W6769535376","https://openalex.org/W6774524395","https://openalex.org/W6775440221","https://openalex.org/W6777271180","https://openalex.org/W6778587188","https://openalex.org/W6779601940","https://openalex.org/W6780068773","https://openalex.org/W6781104104","https://openalex.org/W6781141368","https://openalex.org/W6781281335","https://openalex.org/W6781728753","https://openalex.org/W6783657889","https://openalex.org/W6785952450"],"related_works":["https://openalex.org/W2008875895","https://openalex.org/W1970932468","https://openalex.org/W1932710078","https://openalex.org/W1995328853","https://openalex.org/W1983916957","https://openalex.org/W2510793503","https://openalex.org/W1976788601","https://openalex.org/W2127264463","https://openalex.org/W2764191054","https://openalex.org/W2165298019"],"abstract_inverted_index":{"SARS-CoV-2":[0,69,195,206,221],"is":[1,24,101],"the":[2,7,29,102,111,131,182,220],"causative":[3],"agent":[4],"of":[5,82,88,113,117,156,166,184,194,213,228],"COVID-19,":[6],"ongoing":[8,167],"global":[9],"pandemic.":[10],"It":[11],"has":[12,33],"posed":[13],"a":[14,79,106],"worldwide":[15],"challenge":[16],"to":[17,27,35,46,78,104,190,210,237],"human":[18],"health":[19],"as":[20],"no":[21],"effective":[22],"treatment":[23],"currently":[25],"available":[26],"combat":[28],"disease.":[30],"Its":[31],"severity":[32],"led":[34],"unprecedented":[36,126],"collaborative":[37],"initiatives":[38],"for":[39,50,145,176],"therapeutic":[40,108,198],"solutions":[41],"against":[42,248],"COVID-19.":[43],"Studies":[44],"resorting":[45],"structure-based":[47,188,243],"drug":[48,244],"design":[49,247],"COVID-19":[51,177],"are":[52],"plethoric":[53],"and":[54,76,91,97,128,140,158,174,187,197,207,239,245],"show":[55],"good":[56],"promise.":[57],"Structural":[58],"biology":[59],"provides":[60],"key":[61,103,217],"insights":[62],"into":[63],"3D":[64],"structures,":[65],"critical":[66],"residues/mutations":[67],"in":[68,72,130,219,223,230],"proteins,":[70],"implicated":[71],"infectivity,":[73],"molecular":[74,159],"recognition":[75],"susceptibility":[77,236],"broad":[80],"range":[81],"host":[83,95,231,235],"species.":[84],"The":[85],"detailed":[86],"understanding":[87,203],"viral":[89],"proteins":[90,119,232],"their":[92],"complexes":[93],"with":[94],"receptors":[96],"candidate":[98],"epitope/lead":[99],"compounds":[100],"developing":[105,170],"structure-guided":[107],"design.":[109],"Since":[110],"discovery":[112],"SARS-CoV-2,":[114,214],"several":[115],"structures":[116],"its":[118],"have":[120,142],"been":[121,143],"determined":[122],"experimentally":[123],"at":[124],"an":[125,164],"speed":[127],"deposited":[129],"Protein":[132],"Data":[133],"Bank.":[134],"Further,":[135],"specialized":[136],"structural":[137,171],"bioinformatics":[138,172],"tools":[139,173],"resources":[141,175,186],"developed":[144],"theoretical":[146],"models,":[147],"data":[148],"on":[149,169],"protein":[150],"dynamics":[151],"from":[152],"computer":[153],"simulations,":[154],"impact":[155,183],"variants/mutations":[157],"therapeutics.":[160],"Here,":[161],"we":[162],"provide":[163],"overview":[165],"efforts":[168],"research.":[178],"We":[179],"also":[180],"discuss":[181],"these":[185],"studies,":[189],"understand":[191],"various":[192],"aspects":[193],"infection":[196,238],"development.":[199],"These":[200],"include":[201],"(i)":[202],"differences":[204],"between":[205],"SARS-CoV,":[208],"leading":[209],"increased":[211],"infectivity":[212],"(ii)":[215],"deciphering":[216],"residues":[218],"involved":[222],"receptor-antibody":[224],"recognition,":[225],"(iii)":[226],"analysis":[227],"variants":[229],"that":[233],"affect":[234],"(iv)":[240],"analyses":[241],"facilitating":[242],"vaccine":[246],"SARS-CoV-2.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":19}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}
