{"id":"https://openalex.org/W3116524082","doi":"https://doi.org/10.1093/bib/bbaa353","title":"Pathogenic gene prediction based on network embedding","display_name":"Pathogenic gene prediction based on network embedding","publication_year":2020,"publication_date":"2020-11-11","ids":{"openalex":"https://openalex.org/W3116524082","doi":"https://doi.org/10.1093/bib/bbaa353","mag":"3116524082","pmid":"https://pubmed.ncbi.nlm.nih.gov/33367541"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa353","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa353","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100313471","display_name":"Yang Liu","orcid":"https://orcid.org/0000-0003-3435-7473"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yang Liu","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035519525","display_name":"Yuchen Guo","orcid":"https://orcid.org/0000-0001-9808-9805"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuchen Guo","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054513626","display_name":"Xiaoyan Liu","orcid":"https://orcid.org/0000-0002-2409-8941"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyan Liu","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070849202","display_name":"Chunyu Wang","orcid":"https://orcid.org/0000-0002-2965-9920"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunyu Wang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079800756","display_name":"Maozu Guo","orcid":"https://orcid.org/0000-0001-6228-6276"},"institutions":[{"id":"https://openalex.org/I62853816","display_name":"Beijing University of Civil Engineering and Architecture","ror":"https://ror.org/02yj0p855","country_code":"CN","type":"education","lineage":["https://openalex.org/I62853816"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Maozu Guo","raw_affiliation_strings":["School of Electrical and Information Engineering, Beijing University of Civil Engineering and Architecture, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Electrical and Information Engineering, Beijing University of Civil Engineering and Architecture, Beijing, China","institution_ids":["https://openalex.org/I62853816"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5079800756","https://openalex.org/A5100313471"],"corresponding_institution_ids":["https://openalex.org/I204983213","https://openalex.org/I62853816"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.0771,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.76804541,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"22","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.709397554397583},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5963830947875977},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5787237286567688},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5784705281257629},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4674457311630249},{"id":"https://openalex.org/keywords/complex-disease","display_name":"Complex disease","score":0.45745766162872314},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4285507798194885},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4280092716217041},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4030286967754364},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3886096477508545},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37528669834136963},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19919341802597046},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1711958944797516},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1359064280986786}],"concepts":[{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.709397554397583},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5963830947875977},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5787237286567688},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5784705281257629},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4674457311630249},{"id":"https://openalex.org/C3018605307","wikidata":"https://www.wikidata.org/wiki/Q200779","display_name":"Complex disease","level":3,"score":0.45745766162872314},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4285507798194885},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4280092716217041},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4030286967754364},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3886096477508545},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37528669834136963},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19919341802597046},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1711958944797516},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1359064280986786},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbaa353","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa353","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33367541","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33367541","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":46,"referenced_works":["https://openalex.org/W1614298861","https://openalex.org/W2036178129","https://openalex.org/W2038122249","https://openalex.org/W2058539819","https://openalex.org/W2097498614","https://openalex.org/W2097532544","https://openalex.org/W2100582962","https://openalex.org/W2103478816","https://openalex.org/W2104261859","https://openalex.org/W2118169662","https://openalex.org/W2118607021","https://openalex.org/W2119220491","https://openalex.org/W2123688186","https://openalex.org/W2125118217","https://openalex.org/W2137518425","https://openalex.org/W2145295623","https://openalex.org/W2154654747","https://openalex.org/W2154851992","https://openalex.org/W2159767718","https://openalex.org/W2161444669","https://openalex.org/W2163480486","https://openalex.org/W2393319904","https://openalex.org/W2554952599","https://openalex.org/W2741564801","https://openalex.org/W2743104969","https://openalex.org/W2780779540","https://openalex.org/W2799307902","https://openalex.org/W2888358121","https://openalex.org/W2896002881","https://openalex.org/W2908304275","https://openalex.org/W2930902918","https://openalex.org/W2962975498","https://openalex.org/W2963858333","https://openalex.org/W2964015378","https://openalex.org/W4256017672","https://openalex.org/W4297571622","https://openalex.org/W4297733535","https://openalex.org/W4322614756","https://openalex.org/W6636510571","https://openalex.org/W6641446668","https://openalex.org/W6677849327","https://openalex.org/W6707620307","https://openalex.org/W6712081154","https://openalex.org/W6726873649","https://openalex.org/W6730084236","https://openalex.org/W6948116018"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2183306018","https://openalex.org/W2549990292","https://openalex.org/W2345479200","https://openalex.org/W2951819827","https://openalex.org/W2849310602","https://openalex.org/W2419146053","https://openalex.org/W2088247287","https://openalex.org/W3006008237","https://openalex.org/W4313153715"],"abstract_inverted_index":{"In":[0],"disease":[1,56],"research,":[2],"the":[3,15,29,53,60,90],"study":[4],"of":[5,17],"gene-disease":[6],"correlation":[7,54,61],"has":[8],"always":[9],"been":[10],"an":[11],"important":[12],"topic.":[13],"With":[14],"emergence":[16],"large-scale":[18],"connected":[19],"data":[20],"sets":[21],"in":[22],"biology,":[23],"we":[24,68],"use":[25],"known":[26],"correlations":[27],"between":[28,55],"entities,":[30],"which":[31],"may":[32],"be":[33],"from":[34],"different":[35],"sets,":[36],"to":[37,51,63,72,76],"build":[38],"a":[39,45],"biological":[40],"heterogeneous":[41],"network":[42,47],"and":[43,57],"propose":[44],"new":[46],"embedded":[48],"representation":[49],"algorithm":[50],"calculate":[52],"genes,":[58],"using":[59],"score":[62],"predict":[64],"pathogenic":[65],"genes.":[66],"Then,":[67],"conduct":[69],"several":[70],"experiments":[71],"compare":[73],"our":[74,84],"method":[75,85],"other":[77],"state-of-the-art":[78],"methods.":[79,92],"The":[80],"results":[81],"reveal":[82],"that":[83],"achieves":[86],"better":[87],"performance":[88],"than":[89],"traditional":[91]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
