{"id":"https://openalex.org/W3113260825","doi":"https://doi.org/10.1093/bib/bbaa340","title":"Design of an epitope-based peptide vaccine against the SARS-CoV-2: a vaccine-informatics approach","display_name":"Design of an epitope-based peptide vaccine against the SARS-CoV-2: a vaccine-informatics approach","publication_year":2020,"publication_date":"2020-10-28","ids":{"openalex":"https://openalex.org/W3113260825","doi":"https://doi.org/10.1093/bib/bbaa340","mag":"3113260825","pmid":"https://pubmed.ncbi.nlm.nih.gov/33285567"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa340","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/1309/36655151/bbaa340.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/22/2/1309/36655151/bbaa340.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019444818","display_name":"Aftab Alam","orcid":"https://orcid.org/0000-0002-6989-9398"},"institutions":[{"id":"https://openalex.org/I59475050","display_name":"Jamia Millia Islamia","ror":"https://ror.org/00pnhhv55","country_code":"IN","type":"education","lineage":["https://openalex.org/I59475050"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Aftab Alam","raw_affiliation_strings":["Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia University, New Delhi 110025, India"],"raw_orcid":"https://orcid.org/0000-0002-6989-9398","affiliations":[{"raw_affiliation_string":"Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia University, New Delhi 110025, India","institution_ids":["https://openalex.org/I59475050"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071239882","display_name":"Arbaaz Khan","orcid":null},"institutions":[{"id":"https://openalex.org/I59475050","display_name":"Jamia Millia Islamia","ror":"https://ror.org/00pnhhv55","country_code":"IN","type":"education","lineage":["https://openalex.org/I59475050"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Arbaaz Khan","raw_affiliation_strings":["Department of computer science, Jamia Millia Islamia University, New Delhi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of computer science, Jamia Millia Islamia University, New Delhi, India","institution_ids":["https://openalex.org/I59475050"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037799363","display_name":"Nikhat Imam","orcid":"https://orcid.org/0000-0003-0501-5423"},"institutions":[{"id":"https://openalex.org/I59475050","display_name":"Jamia Millia Islamia","ror":"https://ror.org/00pnhhv55","country_code":"IN","type":"education","lineage":["https://openalex.org/I59475050"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Nikhat Imam","raw_affiliation_strings":["Centre for Interdisciplinary Research in Basic Science, Jamia Millia Islamia University, New Delhi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Interdisciplinary Research in Basic Science, Jamia Millia Islamia University, New Delhi, India","institution_ids":["https://openalex.org/I59475050"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012493365","display_name":"Mohd Faizan Siddiqui","orcid":"https://orcid.org/0000-0001-6634-076X"},"institutions":[{"id":"https://openalex.org/I186862513","display_name":"Osh State University","ror":"https://ror.org/0449rh157","country_code":"KG","type":"education","lineage":["https://openalex.org/I186862513"]}],"countries":["KG"],"is_corresponding":false,"raw_author_name":"Mohd Faizan Siddiqui","raw_affiliation_strings":["International Medical Faculty, Osh State University, Kyrgyz Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Medical Faculty, Osh State University, Kyrgyz Republic","institution_ids":["https://openalex.org/I186862513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101947899","display_name":"Mohd Waseem","orcid":"https://orcid.org/0000-0003-4351-4151"},"institutions":[{"id":"https://openalex.org/I152429107","display_name":"Jawaharlal Nehru University","ror":"https://ror.org/0567v8t28","country_code":"IN","type":"education","lineage":["https://openalex.org/I152429107"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Mohd Waseem","raw_affiliation_strings":["School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, India","institution_ids":["https://openalex.org/I152429107"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078315190","display_name":"Md. Zubbair Malik","orcid":"https://orcid.org/0000-0001-6693-0401"},"institutions":[{"id":"https://openalex.org/I152429107","display_name":"Jawaharlal Nehru University","ror":"https://ror.org/0567v8t28","country_code":"IN","type":"education","lineage":["https://openalex.org/I152429107"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Md Zubbair Malik","raw_affiliation_strings":["School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, India","institution_ids":["https://openalex.org/I152429107"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027913973","display_name":"Romana Ishrat","orcid":"https://orcid.org/0000-0001-9744-9047"},"institutions":[{"id":"https://openalex.org/I59475050","display_name":"Jamia Millia Islamia","ror":"https://ror.org/00pnhhv55","country_code":"IN","type":"education","lineage":["https://openalex.org/I59475050"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Romana Ishrat","raw_affiliation_strings":["Centre for Interdisciplinary Research in Basic Science, Jamia Millia Islamia University, New Delhi, India"],"raw_orcid":"https://orcid.org/0000-0001-9744-9047","affiliations":[{"raw_affiliation_string":"Centre for Interdisciplinary Research in Basic Science, Jamia Millia Islamia University, New Delhi, India","institution_ids":["https://openalex.org/I59475050"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5027913973"],"corresponding_institution_ids":["https://openalex.org/I59475050"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.9259,"has_fulltext":true,"cited_by_count":54,"citation_normalized_percentile":{"value":0.92178708,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"22","issue":"2","first_page":"1309","last_page":"1323"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9718999862670898,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.8009700775146484},{"id":"https://openalex.org/keywords/peptide-vaccine","display_name":"Peptide vaccine","score":0.7365212440490723},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.6531839370727539},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.6309219002723694},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.6193464994430542},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.4968006908893585},{"id":"https://openalex.org/keywords/2019-20-coronavirus-outbreak","display_name":"2019-20 coronavirus outbreak","score":0.49527087807655334},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40335339307785034},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.37072160840034485},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34641432762145996},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.21827811002731323},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2095944881439209},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.20094648003578186},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.19706422090530396},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.07607397437095642},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.06590190529823303},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.04707023501396179}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.8009700775146484},{"id":"https://openalex.org/C2776789287","wikidata":"https://www.wikidata.org/wiki/Q7166532","display_name":"Peptide vaccine","level":4,"score":0.7365212440490723},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.6531839370727539},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.6309219002723694},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.6193464994430542},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.4968006908893585},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.49527087807655334},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40335339307785034},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.37072160840034485},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34641432762145996},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.21827811002731323},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2095944881439209},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.20094648003578186},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.19706422090530396},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.07607397437095642},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.06590190529823303},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.04707023501396179},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbaa340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa340","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/1309/36655151/bbaa340.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33285567","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33285567","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:6735235","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7799329","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7799329","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7799329","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaa340","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa340","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/1309/36655151/bbaa340.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8199999928474426,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2011327466","display_name":null,"funder_award_id":"ISRM/11(03)12019","funder_id":"https://openalex.org/F4320320720","funder_display_name":"Indian Council of Medical Research"}],"funders":[{"id":"https://openalex.org/F4320318603","display_name":"Jamia Millia Islamia","ror":"https://ror.org/00pnhhv55"},{"id":"https://openalex.org/F4320320720","display_name":"Indian Council of Medical Research","ror":"https://ror.org/0492wrx28"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3113260825.pdf","grobid_xml":"https://content.openalex.org/works/W3113260825.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W1503364994","https://openalex.org/W1526839960","https://openalex.org/W1542067597","https://openalex.org/W1771326673","https://openalex.org/W1971858797","https://openalex.org/W1973980688","https://openalex.org/W1974464083","https://openalex.org/W1975541761","https://openalex.org/W1978345160","https://openalex.org/W1985588649","https://openalex.org/W1993568862","https://openalex.org/W2009423060","https://openalex.org/W2012625502","https://openalex.org/W2014274241","https://openalex.org/W2028857699","https://openalex.org/W2046086472","https://openalex.org/W2051599163","https://openalex.org/W2052221307","https://openalex.org/W2061543974","https://openalex.org/W2063409538","https://openalex.org/W2066609648","https://openalex.org/W2071244674","https://openalex.org/W2079953901","https://openalex.org/W2087202599","https://openalex.org/W2100933843","https://openalex.org/W2102023232","https://openalex.org/W2102377211","https://openalex.org/W2106637447","https://openalex.org/W2117333383","https://openalex.org/W2122779464","https://openalex.org/W2126719129","https://openalex.org/W2127322768","https://openalex.org/W2130479394","https://openalex.org/W2141059167","https://openalex.org/W2143397050","https://openalex.org/W2146736410","https://openalex.org/W2147326056","https://openalex.org/W2148177811","https://openalex.org/W2148351763","https://openalex.org/W2151539653","https://openalex.org/W2160397907","https://openalex.org/W2167339434","https://openalex.org/W2228486038","https://openalex.org/W2493891030","https://openalex.org/W2618459274","https://openalex.org/W2788365551","https://openalex.org/W2909167702","https://openalex.org/W2941112903","https://openalex.org/W2945153532","https://openalex.org/W3004397688","https://openalex.org/W3006962945","https://openalex.org/W3007407747","https://openalex.org/W3007533211","https://openalex.org/W3007886991","https://openalex.org/W3009828946","https://openalex.org/W3011176674","https://openalex.org/W3011488280","https://openalex.org/W3012702001","https://openalex.org/W3012941997","https://openalex.org/W3013093478","https://openalex.org/W3014160235","https://openalex.org/W3014900789","https://openalex.org/W3016089766","https://openalex.org/W3020860985","https://openalex.org/W3022435472","https://openalex.org/W3022974266","https://openalex.org/W3036730954","https://openalex.org/W3143079713","https://openalex.org/W4296234089","https://openalex.org/W6632556893","https://openalex.org/W6774764905","https://openalex.org/W6779532219"],"related_works":["https://openalex.org/W3127156785","https://openalex.org/W4205754011","https://openalex.org/W3009669391","https://openalex.org/W4200329650","https://openalex.org/W4205215807","https://openalex.org/W3005417802","https://openalex.org/W4226296940","https://openalex.org/W3028835529","https://openalex.org/W3036314732","https://openalex.org/W3134376730"],"abstract_inverted_index":{"The":[0,117],"recurrent":[1],"and":[2,32,63,87,103,110,167,180,257],"recent":[3],"global":[4,18],"outbreak":[5],"of":[6,79,98,125,138,149,178,190,208],"the":[7,30,65,94,144,150,191,199,206,216,231,243],"severe":[8],"acute":[9],"respiratory":[10],"syndrome":[11],"coronavirus-2":[12],"(SARS-CoV-2)":[13],"has":[14,21,55,121],"turned":[15],"into":[16],"a":[17,77,187,239],"concern":[19],"which":[20,47,100,213,236],"infected":[22],"more":[23,50],"than":[24],"42":[25],"million":[26],"people":[27],"all":[28],"over":[29,136],"globe,":[31],"this":[33,72,181,220,249],"number":[34],"is":[35,45,101],"increasing":[36],"in":[37,59,68,93,105,112,143,205,230,242,255,258],"hours.":[38],"Unfortunately,":[39],"no":[40],"vaccine":[41,69,192],"or":[42,90],"specific":[43],"treatment":[44],"available,":[46],"makes":[48],"it":[49],"deadly.":[51],"A":[52],"vaccine-informatics":[53],"approach":[54],"shown":[56],"significant":[57],"breakthrough":[58],"peptide-based":[60],"epitope":[61],"mapping":[62],"opens":[64,237],"new":[66,240],"horizon":[67,241],"development.":[70],"In":[71],"study,":[73],"we":[74],"have":[75],"identified":[76,153,200],"total":[78],"15":[80],"antigenic":[81,109],"peptides":[82,130,142,155,201],"[including":[83],"thymus":[84],"cells":[85],"(T-cells)":[86],"bone":[88],"marrow":[89],"bursa-derived":[91],"cells]":[92],"surface":[95],"glycoprotein":[96],"(SG)":[97],"SARS-CoV-2":[99,114],"nontoxic":[102],"nonallergenic":[104],"nature,":[106],"nonallergenic,":[107],"highly":[108],"non-mutated":[111],"other":[113],"virus":[115],"strains.":[116],"population":[118,134],"coverage":[119,135],"analysis":[120,196],"found":[122],"that":[123,169,198],"cluster":[124,137],"differentiation":[126,139],"4":[127],"(CD4+)":[128],"T-cell":[129,217],"showed":[131],"higher":[132],"cumulative":[133],"8":[140],"(CD8+)":[141],"16":[145],"different":[146],"geographical":[147],"regions":[148],"world.":[151],"We":[152],"12":[154],"((LTDEMIAQY,":[156],"WTAGAAAYY,":[157],"WMESEFRVY,":[158],"IRASANLAA,":[159],"FGAISSVLN,":[160],"VKQLSSNFG,":[161],"FAMQMAYRF,":[162],"FGAGAALQI,":[163],"YGFQPTNGVGYQ,":[164],"LPDPSKPSKR,":[165],"QTQTNSPRRARS":[166],"VITPGTNTSN)":[168],"are":[170,202],"$80\\hbox{--}":[171],"90\\%$":[172],"identical":[173],"with":[174],"experimentally":[175],"determined":[176],"epitopes":[177],"SARS-CoV,":[179],"will":[182],"likely":[183],"be":[184],"beneficial":[185],"for":[186],"quick":[188],"progression":[189],"design.":[193],"Moreover,":[194],"docking":[195],"suggested":[197],"tightly":[203],"bound":[204],"groove":[207],"human":[209],"leukocyte":[210],"antigen":[211,228],"molecules":[212],"can":[214],"induce":[215],"response.":[218],"Overall,":[219],"study":[221,250],"allows":[222],"us":[223],"to":[224],"determine":[225],"potent":[226],"peptide":[227],"targets":[229],"SG":[232],"on":[233],"intuitive":[234],"grounds,":[235],"up":[238],"coronavirus":[244],"disease":[245],"(COVID-19)":[246],"research.":[247],"However,":[248],"needs":[251],"experimental":[252],"validation":[253],"by":[254],"vitro":[256],"vivo.":[259]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":5}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
