{"id":"https://openalex.org/W3111862902","doi":"https://doi.org/10.1093/bib/bbaa313","title":"Protein subcellular localization based on deep image features and criterion learning strategy","display_name":"Protein subcellular localization based on deep image features and criterion learning strategy","publication_year":2020,"publication_date":"2020-12-08","ids":{"openalex":"https://openalex.org/W3111862902","doi":"https://doi.org/10.1093/bib/bbaa313","mag":"3111862902","pmid":"https://pubmed.ncbi.nlm.nih.gov/33320936"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa313","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa313","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044939301","display_name":"Ran Su","orcid":null},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ran Su","raw_affiliation_strings":["School of Computer Software, College of Intelligence and Computing, Tianjin University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Software, College of Intelligence and Computing, Tianjin University, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034894320","display_name":"Linlin He","orcid":"https://orcid.org/0000-0002-2148-4660"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Linlin He","raw_affiliation_strings":["School of Computer Software, College of Intelligence and Computing, Tianjin University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Software, College of Intelligence and Computing, Tianjin University, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089026024","display_name":"Tianling Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianling Liu","raw_affiliation_strings":["School of Computer Software, College of Intelligence and Computing, Tianjin University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Software, College of Intelligence and Computing, Tianjin University, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100359299","display_name":"Xiaofeng Liu","orcid":"https://orcid.org/0000-0003-0648-4897"},"institutions":[{"id":"https://openalex.org/I2802573037","display_name":"Tianjin Medical University Cancer Institute and Hospital","ror":"https://ror.org/0152hn881","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802573037"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaofeng Liu","raw_affiliation_strings":["Key Laboratory of Breast Cancer Prevention and Therapy, Ministry of Education, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center of Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Breast Cancer Prevention and Therapy, Ministry of Education, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center of Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin, China","institution_ids":["https://openalex.org/I2802573037"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033232360","display_name":"Leyi Wei","orcid":"https://orcid.org/0000-0003-1444-190X"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Leyi Wei","raw_affiliation_strings":["School of Software, Shandong University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Shandong University, China","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5033232360","https://openalex.org/A5044939301","https://openalex.org/A5100359299"],"corresponding_institution_ids":["https://openalex.org/I154099455","https://openalex.org/I162868743","https://openalex.org/I2802573037"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.6672,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.84536574,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"22","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7891092896461487},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.7602846622467041},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7547021508216858},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.740361750125885},{"id":"https://openalex.org/keywords/subcellular-localization","display_name":"Subcellular localization","score":0.6120334267616272},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.581443727016449},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.515242874622345},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.511492133140564},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.48946988582611084},{"id":"https://openalex.org/keywords/protein-subcellular-localization-prediction","display_name":"Protein subcellular localization prediction","score":0.4839690029621124},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.43725061416625977},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.43682733178138733},{"id":"https://openalex.org/keywords/deep-neural-networks","display_name":"Deep neural networks","score":0.41454213857650757},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3711346387863159},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08248120546340942}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7891092896461487},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.7602846622467041},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7547021508216858},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.740361750125885},{"id":"https://openalex.org/C2776879804","wikidata":"https://www.wikidata.org/wiki/Q7630919","display_name":"Subcellular localization","level":3,"score":0.6120334267616272},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.581443727016449},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.515242874622345},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.511492133140564},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.48946988582611084},{"id":"https://openalex.org/C140051345","wikidata":"https://www.wikidata.org/wiki/Q7251501","display_name":"Protein subcellular localization prediction","level":3,"score":0.4839690029621124},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.43725061416625977},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.43682733178138733},{"id":"https://openalex.org/C2984842247","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep neural networks","level":3,"score":0.41454213857650757},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3711346387863159},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08248120546340942},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C190062978","wikidata":"https://www.wikidata.org/wiki/Q79899","display_name":"Cytoplasm","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbaa313","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa313","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33320936","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33320936","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1592685818","display_name":null,"funder_award_id":"18JCQNJC00800","funder_id":"https://openalex.org/F4320323993","funder_display_name":"Natural Science Foundation of Tianjin City"},{"id":"https://openalex.org/G2833016204","display_name":"\u57fa\u4e8e\u4eba\u5de5\u667a\u80fd\u7684\u591a\u80bd\u836f\u7269\u8bc6\u522b\u4e0e\u5206\u6790\u65b9\u6cd5\u7814\u7a76","funder_award_id":"62071278","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3139241416","display_name":null,"funder_award_id":"61701340","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7047309604","display_name":"\u4e2a\u6027\u5316\u6297\u764c\u836f\u7269\u7684\u667a\u80fd\u9009\u62e9\u65b9\u6cd5\u7814\u7a76","funder_award_id":"62072329","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7456151772","display_name":null,"funder_award_id":"18JCQNJC00500","funder_id":"https://openalex.org/F4320323993","funder_display_name":"Natural Science Foundation of Tianjin City"},{"id":"https://openalex.org/G990916180","display_name":null,"funder_award_id":"61702361","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323993","display_name":"Natural Science Foundation of Tianjin City","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W1969285483","https://openalex.org/W1999010280","https://openalex.org/W2019679659","https://openalex.org/W2036123538","https://openalex.org/W2079579181","https://openalex.org/W2087429340","https://openalex.org/W2099701744","https://openalex.org/W2101234009","https://openalex.org/W2113846729","https://openalex.org/W2120172431","https://openalex.org/W2120764346","https://openalex.org/W2130496575","https://openalex.org/W2145752049","https://openalex.org/W2152482858","https://openalex.org/W2153944330","https://openalex.org/W2154053567","https://openalex.org/W2154477800","https://openalex.org/W2162619882","https://openalex.org/W2187089797","https://openalex.org/W2194775991","https://openalex.org/W2338174866","https://openalex.org/W2500440716","https://openalex.org/W2511730936","https://openalex.org/W2531409750","https://openalex.org/W2566825588","https://openalex.org/W2593414740","https://openalex.org/W2604272474","https://openalex.org/W2613629789","https://openalex.org/W2616487990","https://openalex.org/W2747811776","https://openalex.org/W2749613778","https://openalex.org/W2796101351","https://openalex.org/W2884560999","https://openalex.org/W2898910301","https://openalex.org/W2950695830","https://openalex.org/W2982028254","https://openalex.org/W2995915627","https://openalex.org/W3136918052","https://openalex.org/W6637373629","https://openalex.org/W6675354045","https://openalex.org/W6677274761","https://openalex.org/W6684191040","https://openalex.org/W6687483927","https://openalex.org/W6753426667","https://openalex.org/W6756380679"],"related_works":["https://openalex.org/W2351398203","https://openalex.org/W4205775722","https://openalex.org/W4366498163","https://openalex.org/W3215969703","https://openalex.org/W2384565783","https://openalex.org/W2406531951","https://openalex.org/W2099701744","https://openalex.org/W4282922129","https://openalex.org/W1530366416","https://openalex.org/W2105106533"],"abstract_inverted_index":{"The":[0,169],"spatial":[1],"distribution":[2],"of":[3,25,46],"proteome":[4],"at":[5,73,177],"subcellular":[6,33,53,74],"levels":[7],"provides":[8],"clues":[9],"for":[10,30,171],"protein":[11,32,52],"functions,":[12],"thus":[13],"is":[14,100,175],"important":[15,28],"to":[16,51,69,112,125],"human":[17],"biology":[18],"and":[19,89,117],"medicine.":[20],"Imaging-based":[21],"methods":[22],"are":[23],"one":[24],"the":[26,71,97,114,127,135,147,156,159,172],"most":[27],"approaches":[29],"predicting":[31],"location.":[34],"Although":[35],"deep":[36,66,78,160],"neural":[37,84],"networks":[38,85],"have":[39],"shown":[40],"impressive":[41],"performance":[42],"in":[43],"a":[44,65,102,108],"number":[45],"imaging":[47],"tasks,":[48],"its":[49],"application":[50],"localization":[54],"has":[55],"not":[56],"been":[57],"sufficiently":[58],"explored.":[59],"In":[60],"this":[61],"study,":[62],"we":[63,106],"developed":[64,107],"imaging-based":[67],"approach":[68],"localize":[70],"proteins":[72],"levels.":[75],"Based":[76],"on":[77],"image":[79],"features":[80,161],"extracted":[81],"from":[82],"convolutional":[83],"(CNNs),":[86],"both":[87],"single-label":[88],"multi-label":[90,98],"locations":[91],"can":[92],"be":[93],"accurately":[94],"predicted.":[95],"Particularly,":[96],"prediction":[99,165],"quite":[101],"challenging":[103],"task.":[104],"Here":[105],"criterion":[109,121],"learning":[110,136],"strategy":[111],"exploit":[113],"label-attribute":[115],"relevancy":[116],"label-label":[118],"relevancy.":[119],"A":[120],"that":[122,144,153],"was":[123,131],"used":[124],"determine":[126],"final":[128],"label":[129],"set":[130],"automatically":[132],"obtained":[133],"during":[134],"procedure.":[137],"We":[138],"concluded":[139],"an":[140],"optimal":[141],"CNN":[142],"architecture":[143],"could":[145],"give":[146],"best":[148],"results.":[149],"Besides,":[150],"experiments":[151],"show":[152],"compared":[154],"with":[155,166],"hand-crafted":[157],"features,":[158],"present":[162],"more":[163],"accurate":[164],"less":[167],"features.":[168],"implementation":[170],"proposed":[173],"method":[174],"available":[176],"https://github.com/RanSuLab/ProteinSubcellularLocation.":[178]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":4}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
