{"id":"https://openalex.org/W3101256226","doi":"https://doi.org/10.1093/bib/bbaa294","title":"AlgPred 2.0: an improved method for predicting allergenic proteins and mapping of IgE epitopes","display_name":"AlgPred 2.0: an improved method for predicting allergenic proteins and mapping of IgE epitopes","publication_year":2020,"publication_date":"2020-10-08","ids":{"openalex":"https://openalex.org/W3101256226","doi":"https://doi.org/10.1093/bib/bbaa294","mag":"3101256226","pmid":"https://pubmed.ncbi.nlm.nih.gov/33201237"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa294","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa294","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://github.com/raghavagps/algpred2/tree/v1.0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101954612","display_name":"Neelam Sharma","orcid":"https://orcid.org/0000-0002-1765-3644"},"institutions":[{"id":"https://openalex.org/I119939252","display_name":"Indraprastha Institute of Information Technology Delhi","ror":"https://ror.org/03vfp4g33","country_code":"IN","type":"education","lineage":["https://openalex.org/I119939252"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Neelam Sharma","raw_affiliation_strings":["Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India"],"raw_orcid":"https://orcid.org/0000-0002-1765-3644","affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India","institution_ids":["https://openalex.org/I119939252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048158238","display_name":"Sumeet Patiyal","orcid":"https://orcid.org/0000-0003-1358-292X"},"institutions":[{"id":"https://openalex.org/I119939252","display_name":"Indraprastha Institute of Information Technology Delhi","ror":"https://ror.org/03vfp4g33","country_code":"IN","type":"education","lineage":["https://openalex.org/I119939252"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sumeet Patiyal","raw_affiliation_strings":["Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India"],"raw_orcid":"https://orcid.org/0000-0003-1358-292X","affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India","institution_ids":["https://openalex.org/I119939252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054096262","display_name":"Anjali Dhall","orcid":"https://orcid.org/0000-0002-0400-2084"},"institutions":[{"id":"https://openalex.org/I119939252","display_name":"Indraprastha Institute of Information Technology Delhi","ror":"https://ror.org/03vfp4g33","country_code":"IN","type":"education","lineage":["https://openalex.org/I119939252"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Anjali Dhall","raw_affiliation_strings":["Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India"],"raw_orcid":"https://orcid.org/0000-0002-0400-2084","affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India","institution_ids":["https://openalex.org/I119939252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102765986","display_name":"Akshara Pande","orcid":"https://orcid.org/0000-0001-6426-7124"},"institutions":[{"id":"https://openalex.org/I119939252","display_name":"Indraprastha Institute of Information Technology Delhi","ror":"https://ror.org/03vfp4g33","country_code":"IN","type":"education","lineage":["https://openalex.org/I119939252"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Akshara Pande","raw_affiliation_strings":["Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India"],"raw_orcid":"https://orcid.org/0000-0001-6426-7124","affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India","institution_ids":["https://openalex.org/I119939252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012929156","display_name":"Chakit Arora","orcid":"https://orcid.org/0000-0001-8613-0647"},"institutions":[{"id":"https://openalex.org/I119939252","display_name":"Indraprastha Institute of Information Technology Delhi","ror":"https://ror.org/03vfp4g33","country_code":"IN","type":"education","lineage":["https://openalex.org/I119939252"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Chakit Arora","raw_affiliation_strings":["Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India"],"raw_orcid":"https://orcid.org/0000-0001-8613-0647","affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India","institution_ids":["https://openalex.org/I119939252"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051938893","display_name":"Gajendra P. S. Raghava","orcid":"https://orcid.org/0000-0002-8902-2876"},"institutions":[{"id":"https://openalex.org/I119939252","display_name":"Indraprastha Institute of Information Technology Delhi","ror":"https://ror.org/03vfp4g33","country_code":"IN","type":"education","lineage":["https://openalex.org/I119939252"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Gajendra P S Raghava","raw_affiliation_strings":["Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India"],"raw_orcid":"https://orcid.org/0000-0002-8902-2876","affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India","institution_ids":["https://openalex.org/I119939252"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5051938893"],"corresponding_institution_ids":["https://openalex.org/I119939252"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":20.333,"has_fulltext":false,"cited_by_count":351,"citation_normalized_percentile":{"value":0.99739093,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"22","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10877","display_name":"Allergic Rhinitis and Sensitization","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2723","display_name":"Immunology and Allergy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10877","display_name":"Allergic Rhinitis and Sensitization","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2723","display_name":"Immunology and Allergy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10634","display_name":"Food Allergy and Anaphylaxis Research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2723","display_name":"Immunology and Allergy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10051","display_name":"Asthma and respiratory diseases","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.7502351403236389},{"id":"https://openalex.org/keywords/immunoglobulin-e","display_name":"Immunoglobulin E","score":0.636739194393158},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.504254937171936},{"id":"https://openalex.org/keywords/epitope-mapping","display_name":"Epitope mapping","score":0.46673688292503357},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41882529854774475},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2549353241920471},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.17782896757125854},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.14811590313911438}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.7502351403236389},{"id":"https://openalex.org/C141105273","wikidata":"https://www.wikidata.org/wiki/Q79455","display_name":"Immunoglobulin E","level":3,"score":0.636739194393158},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.504254937171936},{"id":"https://openalex.org/C2781241564","wikidata":"https://www.wikidata.org/wiki/Q1347450","display_name":"Epitope mapping","level":4,"score":0.46673688292503357},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41882529854774475},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2549353241920471},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.17782896757125854},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.14811590313911438}],"mesh":[{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006967","descriptor_name":"Hypersensitivity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006967","descriptor_name":"Hypersensitivity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006967","descriptor_name":"Hypersensitivity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007073","descriptor_name":"Immunoglobulin E","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D007073","descriptor_name":"Immunoglobulin E","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D007073","descriptor_name":"Immunoglobulin E","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D007073","descriptor_name":"Immunoglobulin E","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007073","descriptor_name":"Immunoglobulin E","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007073","descriptor_name":"Immunoglobulin E","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018604","descriptor_name":"Epitope Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbaa294","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa294","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33201237","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33201237","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:doi:10.5281/zenodo.19885420","is_oa":true,"landing_page_url":"https://github.com/raghavagps/algpred2/tree/v1.0","pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},{"id":"doi:10.5281/zenodo.19885420","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.19885420","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"},{"id":"doi:10.5281/zenodo.19885421","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.19885421","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:doi:10.5281/zenodo.19885420","is_oa":true,"landing_page_url":"https://github.com/raghavagps/algpred2/tree/v1.0","pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323670","display_name":"Department of Science and Technology, Government of Kerala","ror":"https://ror.org/030fy4q75"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":76,"referenced_works":["https://openalex.org/W146695597","https://openalex.org/W188765527","https://openalex.org/W643510496","https://openalex.org/W1517104102","https://openalex.org/W1525644660","https://openalex.org/W1551173739","https://openalex.org/W1592870802","https://openalex.org/W1805963362","https://openalex.org/W1980036004","https://openalex.org/W1998670428","https://openalex.org/W2003805630","https://openalex.org/W2005589083","https://openalex.org/W2010688088","https://openalex.org/W2015176909","https://openalex.org/W2020600748","https://openalex.org/W2023263777","https://openalex.org/W2043990114","https://openalex.org/W2052115585","https://openalex.org/W2063345857","https://openalex.org/W2077131584","https://openalex.org/W2086547881","https://openalex.org/W2090198980","https://openalex.org/W2095646882","https://openalex.org/W2096387274","https://openalex.org/W2096869738","https://openalex.org/W2100124066","https://openalex.org/W2101005439","https://openalex.org/W2101234009","https://openalex.org/W2101352936","https://openalex.org/W2102023232","https://openalex.org/W2102786297","https://openalex.org/W2107862878","https://openalex.org/W2115933717","https://openalex.org/W2120664837","https://openalex.org/W2123501029","https://openalex.org/W2129410760","https://openalex.org/W2131510173","https://openalex.org/W2138248108","https://openalex.org/W2142678478","https://openalex.org/W2151932306","https://openalex.org/W2154139219","https://openalex.org/W2156125289","https://openalex.org/W2163910672","https://openalex.org/W2255477116","https://openalex.org/W2265551258","https://openalex.org/W2281797260","https://openalex.org/W2322844633","https://openalex.org/W2331302109","https://openalex.org/W2537145968","https://openalex.org/W2561871078","https://openalex.org/W2588895177","https://openalex.org/W2739980134","https://openalex.org/W2787142384","https://openalex.org/W2791393509","https://openalex.org/W2801916607","https://openalex.org/W2802937353","https://openalex.org/W2889348737","https://openalex.org/W2895498534","https://openalex.org/W2898389621","https://openalex.org/W2898440695","https://openalex.org/W2909455948","https://openalex.org/W2922561803","https://openalex.org/W2933605448","https://openalex.org/W2952717525","https://openalex.org/W2966489293","https://openalex.org/W2981827938","https://openalex.org/W2989069897","https://openalex.org/W3003598546","https://openalex.org/W3013274818","https://openalex.org/W3135773419","https://openalex.org/W4233120011","https://openalex.org/W4235401883","https://openalex.org/W4250464698","https://openalex.org/W6635200387","https://openalex.org/W6675354045","https://openalex.org/W6761383852"],"related_works":["https://openalex.org/W3189724180","https://openalex.org/W2471846512","https://openalex.org/W2205639271","https://openalex.org/W2393351343","https://openalex.org/W2019166448","https://openalex.org/W4214758967","https://openalex.org/W2331458684","https://openalex.org/W3006433770","https://openalex.org/W2444058223","https://openalex.org/W2800235700"],"abstract_inverted_index":{"AlgPred":[0,23,248],"2.0":[1,249],"is":[2,18],"a":[3,15,61,118,166,195],"web":[4,246],"server":[5,247],"developed":[6,24,193,252],"for":[7,30,174,209],"predicting":[8,210],"allergenic":[9,12,211],"proteins":[10,107],"and":[11,33,40,74,132,178,265],"regions":[13,59],"in":[14,25,60,108,155,165,226],"protein.":[16,62,167],"It":[17],"an":[19],"updated":[20],"version":[21],"of":[22,36,69,77,87,100,140,198,217,228,257,260],"2006.":[26],"The":[27,85],"dataset":[28,95,157],"used":[29,55,183,208],"training,":[31],"testing":[32],"validation":[34,103,243],"consists":[35],"10":[37,41,46],"075":[38,42],"allergens":[39,133,160],"non-allergens.":[43],"In":[44],"addition,":[45],"451":[47],"experimentally":[48],"validated":[49],"immunoglobulin":[50],"E":[51],"(IgE)":[52],"epitopes":[53,147],"were":[54,65,134,153],"to":[56,158,184],"identify":[57],"antigenic":[58],"All":[63],"models":[64,78,190],"trained":[66,91],"on":[67,92,98,137,162,241],"80%":[68],"data":[70,101],"called":[71,102],"training":[72,94],"dataset,":[73,131],"the":[75,88,93,130,138,150,156,203,242,255],"performance":[76,86,225],"was":[79,96],"evaluated":[80,97],"using":[81,194],"5-fold":[82],"cross-validation":[83],"technique.":[84],"final":[89],"model":[90,222],"20%":[99],"dataset;":[104],"no":[105],"two":[106,110],"any":[109],"sets":[111],"have":[112,181,191],"more":[113],"than":[114],"40%":[115],"similarity.":[116],"First,":[117],"Basic":[119],"Local":[120],"Alignment":[121],"Search":[122],"Tool":[123],"(BLAST)":[124],"search":[125,179,264,267],"has":[126,206,250],"been":[127,182,192,207,251],"performed":[128],"against":[129],"predicted":[135],"based":[136,161],"level":[139],"similarity":[141],"with":[142,236],"known":[143],"allergens.":[144,186],"Second,":[145],"IgE":[146,261],"obtained":[148],"from":[149],"IEDB":[151],"database":[152],"searched":[154],"predict":[159,185],"their":[163],"presence":[164],"Third,":[168],"motif-based":[169],"approaches":[170],"like":[171],"multiple":[172],"EM":[173],"motif":[175,263],"elicitation/motif":[176],"alignment":[177],"tool":[180],"Fourth,":[187],"allergen":[188],"prediction":[189,215,256],"wide":[196],"range":[197],"machine":[199],"learning":[200],"techniques.":[201],"Finally,":[202],"ensemble":[204],"approach":[205],"protein":[212],"by":[213],"combining":[214],"scores":[216],"different":[218],"approaches.":[219],"Our":[220],"best":[221],"achieved":[223],"maximum":[224],"terms":[227],"area":[229],"under":[230],"receiver":[231],"operating":[232],"characteristic":[233],"curve":[234],"0.98":[235],"Matthew's":[237],"correlation":[238],"coefficient":[239],"0.85":[240],"dataset.":[244],"A":[245],"that":[253],"allows":[254],"allergens,":[258],"mapping":[259],"epitope,":[262],"BLAST":[266],"(https://webs.iiitd.edu.in/raghava/algpred2/).":[268]},"counts_by_year":[{"year":2026,"cited_by_count":50},{"year":2025,"cited_by_count":83},{"year":2024,"cited_by_count":72},{"year":2023,"cited_by_count":52},{"year":2022,"cited_by_count":57},{"year":2021,"cited_by_count":37}],"updated_date":"2026-06-16T09:24:06.705377","created_date":"2025-10-10T00:00:00"}
