{"id":"https://openalex.org/W3094645479","doi":"https://doi.org/10.1093/bib/bbaa269","title":"CellTalkDB: a manually curated database of ligand\u2013receptor interactions in humans and mice","display_name":"CellTalkDB: a manually curated database of ligand\u2013receptor interactions in humans and mice","publication_year":2020,"publication_date":"2020-09-18","ids":{"openalex":"https://openalex.org/W3094645479","doi":"https://doi.org/10.1093/bib/bbaa269","mag":"3094645479","pmid":"https://pubmed.ncbi.nlm.nih.gov/33147626"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa269","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa269","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074240680","display_name":"Xin Shao","orcid":"https://orcid.org/0000-0002-1928-3878"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Shao","raw_affiliation_strings":["Pharmaceutical Informatics Institute, College of Pharmaceutical Sciences, Zhejiang University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pharmaceutical Informatics Institute, College of Pharmaceutical Sciences, Zhejiang University, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018860020","display_name":"Jie Liao","orcid":"https://orcid.org/0000-0002-6697-8998"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Liao","raw_affiliation_strings":["Pharmaceutical Informatics Institute, College of Pharmaceutical Sciences, Zhejiang University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pharmaceutical Informatics Institute, College of Pharmaceutical Sciences, Zhejiang University, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100385491","display_name":"Chengyu Li","orcid":"https://orcid.org/0000-0003-3144-9460"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengyu Li","raw_affiliation_strings":["Pharmaceutical Informatics Institute, College of Pharmaceutical Sciences, Zhejiang University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pharmaceutical Informatics Institute, College of Pharmaceutical Sciences, Zhejiang University, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101472494","display_name":"Xiaoyan Lu","orcid":"https://orcid.org/0000-0002-0745-3956"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyan Lu","raw_affiliation_strings":["Pharmaceutical Informatics Institute, College of Pharmaceutical Sciences, Zhejiang University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pharmaceutical Informatics Institute, College of Pharmaceutical Sciences, Zhejiang University, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035251881","display_name":"Junyun Cheng","orcid":"https://orcid.org/0000-0002-4226-5168"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junyun Cheng","raw_affiliation_strings":["Pharmaceutical Informatics Institute, College of Pharmaceutical Sciences, Zhejiang University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pharmaceutical Informatics Institute, College of Pharmaceutical Sciences, Zhejiang University, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060364374","display_name":"Xiaohui Fan","orcid":"https://orcid.org/0000-0002-6336-3007"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaohui Fan","raw_affiliation_strings":["College of Pharmaceutical Sciences at Zhejiang University, China"],"raw_orcid":"https://orcid.org/0000-0002-6336-3007","affiliations":[{"raw_affiliation_string":"College of Pharmaceutical Sciences at Zhejiang University, China","institution_ids":["https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5060364374"],"corresponding_institution_ids":["https://openalex.org/I76130692"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":11.1089,"has_fulltext":false,"cited_by_count":326,"citation_normalized_percentile":{"value":0.99183113,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"22","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.545073390007019},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5253854393959045},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4888302683830261},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.4566690921783447},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.3525782823562622},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3096131682395935},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12558987736701965}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.545073390007019},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5253854393959045},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4888302683830261},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.4566690921783447},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.3525782823562622},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3096131682395935},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12558987736701965}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011956","descriptor_name":"Receptors, Cell Surface","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011956","descriptor_name":"Receptors, Cell Surface","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011956","descriptor_name":"Receptors, Cell Surface","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbaa269","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa269","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33147626","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33147626","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3032237234","display_name":null,"funder_award_id":"LZ20H290002","funder_id":"https://openalex.org/F4320338464","funder_display_name":"Natural Science Foundation of Zhejiang Province"},{"id":"https://openalex.org/G4310762535","display_name":null,"funder_award_id":"81973701","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320338464","display_name":"Natural Science Foundation of Zhejiang Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1016059894","https://openalex.org/W1560424863","https://openalex.org/W1954688849","https://openalex.org/W1964261166","https://openalex.org/W1993112045","https://openalex.org/W2003604887","https://openalex.org/W2102212449","https://openalex.org/W2135937351","https://openalex.org/W2148159408","https://openalex.org/W2170831254","https://openalex.org/W2616601873","https://openalex.org/W2762506555","https://openalex.org/W2788837643","https://openalex.org/W2811169723","https://openalex.org/W2896222795","https://openalex.org/W2900411771","https://openalex.org/W2900569176","https://openalex.org/W2920696956","https://openalex.org/W2937446099","https://openalex.org/W2947873326","https://openalex.org/W2950891712","https://openalex.org/W2968872536","https://openalex.org/W2968995168","https://openalex.org/W2981121538","https://openalex.org/W3004512212","https://openalex.org/W3007935255","https://openalex.org/W3012498554","https://openalex.org/W3026876979","https://openalex.org/W3033415403","https://openalex.org/W3044244264","https://openalex.org/W6779493751"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"Cell-cell":[0],"communications":[1,44],"in":[2,20,78,145],"multicellular":[3],"organisms":[4],"generally":[5],"involve":[6],"secreted":[7],"ligand-receptor":[8],"(LR)":[9],"interactions,":[10],"which":[11,160],"is":[12],"vital":[13],"for":[14,109],"various":[15],"biological":[16,169],"phenomena.":[17],"Recent":[18],"advancements":[19],"single-cell":[21,46],"RNA":[22],"sequencing":[23],"(scRNA-seq)":[24],"have":[25],"effectively":[26],"resolved":[27],"cellular":[28],"phenotypic":[29],"heterogeneity":[30],"and":[31,80,87,95,140,153],"the":[32,39,103,115,136,151,156,166],"cell-type":[33],"composition":[34],"of":[35,42,50,61,74,98,155],"complex":[36],"tissues,":[37],"facilitating":[38],"systematic":[40],"investigation":[41],"cell-cell":[43,52,158],"at":[45],"resolution.":[47],"However,":[48],"assessment":[49],"chemical-signal-dependent":[51],"communication":[53],"through":[54,92],"scRNA-seq":[55],"relies":[56],"heavily":[57],"on":[58,138],"prior":[59],"knowledge":[60],"LR":[62,75,85,90,125,132,142],"interaction":[63,76],"pairs.":[64,133],"We":[65],"constructed":[66],"CellTalkDB":[67,119,146],"(http://tcm.zju.edu.cn/celltalkdb),":[68],"a":[69],"manually":[70],"curated":[71],"comprehensive":[72],"database":[73],"pairs":[77,86,126,143],"humans":[79],"mice":[81],"comprising":[82],"3398":[83],"human":[84,131,139],"2033":[88,123],"mouse":[89,124,141],"pairs,":[91],"text":[93],"mining":[94],"manual":[96],"verification":[97],"known":[99],"protein-protein":[100],"interactions":[101],"using":[102],"STRING":[104],"database,":[105],"with":[106,113],"literature-supported":[107],"evidence":[108],"each":[110],"pair.":[111],"Compared":[112],"SingleCellSignalR,":[114],"largest":[116],"LR-pair":[117],"resource,":[118],"includes":[120],"not":[121],"only":[122],"but":[127],"also":[128],"377":[129],"additional":[130],"In":[134],"conclusion,":[135],"data":[137],"contained":[144],"could":[147],"help":[148],"to":[149],"further":[150],"inference":[152],"understanding":[154],"LR-interaction-based":[157],"communications,":[159],"might":[161],"provide":[162],"new":[163],"insights":[164],"into":[165],"mechanism":[167],"underlying":[168],"processes.":[170]},"counts_by_year":[{"year":2026,"cited_by_count":29},{"year":2025,"cited_by_count":74},{"year":2024,"cited_by_count":74},{"year":2023,"cited_by_count":64},{"year":2022,"cited_by_count":63},{"year":2021,"cited_by_count":22}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2020-11-09T00:00:00"}
