{"id":"https://openalex.org/W3095523213","doi":"https://doi.org/10.1093/bib/bbaa262","title":"Compositional diversity and evolutionary pattern of coronavirus accessory proteins","display_name":"Compositional diversity and evolutionary pattern of coronavirus accessory proteins","publication_year":2020,"publication_date":"2020-09-14","ids":{"openalex":"https://openalex.org/W3095523213","doi":"https://doi.org/10.1093/bib/bbaa262","mag":"3095523213","pmid":"https://pubmed.ncbi.nlm.nih.gov/33126244"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa262","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa262","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/1267/36653998/bbaa262.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/22/2/1267/36653998/bbaa262.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014221315","display_name":"Jingzhe Shang","orcid":null},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210122727","display_name":"Suzhou Institute of Systems Medicine","ror":"https://ror.org/02szepc22","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122727","https://openalex.org/I4210141683"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingzhe Shang","raw_affiliation_strings":["Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China","institution_ids":["https://openalex.org/I4210122727","https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101685924","display_name":"Na Han","orcid":"https://orcid.org/0000-0001-6279-5150"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210122727","display_name":"Suzhou Institute of Systems Medicine","ror":"https://ror.org/02szepc22","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122727","https://openalex.org/I4210141683"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Na Han","raw_affiliation_strings":["Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China","institution_ids":["https://openalex.org/I4210122727","https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100368261","display_name":"Ziyi Chen","orcid":"https://orcid.org/0000-0001-9870-4361"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210122727","display_name":"Suzhou Institute of Systems Medicine","ror":"https://ror.org/02szepc22","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122727","https://openalex.org/I4210141683"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziyi Chen","raw_affiliation_strings":["Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China","institution_ids":["https://openalex.org/I4210122727","https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037335167","display_name":"Yousong Peng","orcid":"https://orcid.org/0000-0002-5482-9506"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yousong Peng","raw_affiliation_strings":["College of Biology at Hunan University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Biology at Hunan University, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100420708","display_name":"Liang Li","orcid":"https://orcid.org/0000-0003-1001-7837"},"institutions":[{"id":"https://openalex.org/I4210097945","display_name":"Linyi People's Hospital","ror":"https://ror.org/011r8ce56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210097945"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liang Li","raw_affiliation_strings":["Linyi people\u2019s hospital, Shandong, China","Linyi people's hospital, Shandong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Linyi people\u2019s hospital, Shandong, China","institution_ids":["https://openalex.org/I4210097945"]},{"raw_affiliation_string":"Linyi people's hospital, Shandong, China","institution_ids":["https://openalex.org/I4210097945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015480180","display_name":"Hangyu Zhou","orcid":"https://orcid.org/0000-0002-3762-2319"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210122727","display_name":"Suzhou Institute of Systems Medicine","ror":"https://ror.org/02szepc22","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122727","https://openalex.org/I4210141683"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hangyu Zhou","raw_affiliation_strings":["Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China","institution_ids":["https://openalex.org/I4210122727","https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002473889","display_name":"Chengyang Ji","orcid":"https://orcid.org/0000-0001-9258-5453"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210122727","display_name":"Suzhou Institute of Systems Medicine","ror":"https://ror.org/02szepc22","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122727","https://openalex.org/I4210141683"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengyang Ji","raw_affiliation_strings":["Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China","institution_ids":["https://openalex.org/I4210122727","https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062277357","display_name":"Jing Meng","orcid":"https://orcid.org/0000-0001-5203-5860"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210122727","display_name":"Suzhou Institute of Systems Medicine","ror":"https://ror.org/02szepc22","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122727","https://openalex.org/I4210141683"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Meng","raw_affiliation_strings":["Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China","institution_ids":["https://openalex.org/I4210122727","https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101823373","display_name":"Taijiao Jiang","orcid":"https://orcid.org/0000-0002-6071-0122"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Taijiao Jiang","raw_affiliation_strings":["Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Systems Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047692460","display_name":"Aiping Wu","orcid":"https://orcid.org/0000-0002-5869-651X"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210122727","display_name":"Suzhou Institute of Systems Medicine","ror":"https://ror.org/02szepc22","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210122727","https://openalex.org/I4210141683"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Aiping Wu","raw_affiliation_strings":["Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Suzhou Institute of Systems Medicine, Center for Systems Medicine, Chinese Academy of Medical Sciences and Peking Union Medical College, Jiangsu, Suzhou, China","institution_ids":["https://openalex.org/I4210122727","https://openalex.org/I200296433"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5047692460"],"corresponding_institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210122727"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.8237,"has_fulltext":true,"cited_by_count":37,"citation_normalized_percentile":{"value":0.8466206,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"22","issue":"2","first_page":"1267","last_page":"1278"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10976","display_name":"Viral gastroenteritis research and epidemiology","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11495","display_name":"Animal Virus Infections Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coronavirus","display_name":"Coronavirus","score":0.6883165836334229},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.6304065585136414},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.5520272850990295},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5489773750305176},{"id":"https://openalex.org/keywords/2019-20-coronavirus-outbreak","display_name":"2019-20 coronavirus outbreak","score":0.5430777072906494},{"id":"https://openalex.org/keywords/diversity","display_name":"Diversity (politics)","score":0.5409207940101624},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.49064651131629944},{"id":"https://openalex.org/keywords/betacoronavirus","display_name":"Betacoronavirus","score":0.4384320378303528},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41767364740371704},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3428778648376465},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.25628775358200073},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.12341183423995972},{"id":"https://openalex.org/keywords/anthropology","display_name":"Anthropology","score":0.05937778949737549},{"id":"https://openalex.org/keywords/sociology","display_name":"Sociology","score":0.055534958839416504}],"concepts":[{"id":"https://openalex.org/C2777648638","wikidata":"https://www.wikidata.org/wiki/Q57751738","display_name":"Coronavirus","level":5,"score":0.6883165836334229},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.6304065585136414},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.5520272850990295},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5489773750305176},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.5430777072906494},{"id":"https://openalex.org/C2781316041","wikidata":"https://www.wikidata.org/wiki/Q1230584","display_name":"Diversity (politics)","level":2,"score":0.5409207940101624},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.49064651131629944},{"id":"https://openalex.org/C2778137277","wikidata":"https://www.wikidata.org/wiki/Q16532287","display_name":"Betacoronavirus","level":5,"score":0.4384320378303528},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41767364740371704},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3428778648376465},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.25628775358200073},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.12341183423995972},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.05937778949737549},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.055534958839416504},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005814","descriptor_name":"Genes, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005814","descriptor_name":"Genes, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005814","descriptor_name":"Genes, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaa262","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa262","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/1267/36653998/bbaa262.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33126244","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33126244","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7665327","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7665327","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaa262","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa262","pdf_url":"https://academic.oup.com/bib/article-pdf/22/2/1267/36653998/bbaa262.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.5}],"awards":[{"id":"https://openalex.org/G1308333325","display_name":null,"funder_award_id":"2018PT31016","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2831259117","display_name":null,"funder_award_id":"31900472","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3600473927","display_name":null,"funder_award_id":"CAMS-I2M","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4275199102","display_name":null,"funder_award_id":"2017PT31026","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4636497604","display_name":null,"funder_award_id":"2016-I2M-1-005","funder_id":"https://openalex.org/F4320336738","funder_display_name":"Chinese Academy of Medical Sciences Initiative for Innovative Medicine"},{"id":"https://openalex.org/G5931861492","display_name":null,"funder_award_id":"CAMS-I2M, 2016-I2M-1-005","funder_id":"https://openalex.org/F4320336738","funder_display_name":"Chinese Academy of Medical Sciences Initiative for Innovative Medicine"},{"id":"https://openalex.org/G6160948527","display_name":null,"funder_award_id":"CAMS-I2M","funder_id":"https://openalex.org/F4320336738","funder_display_name":"Chinese Academy of Medical Sciences Initiative for Innovative Medicine"},{"id":"https://openalex.org/G8639187544","display_name":null,"funder_award_id":"2016ZX310195","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320336738","display_name":"Chinese Academy of Medical Sciences Initiative for Innovative Medicine","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3095523213.pdf","grobid_xml":"https://content.openalex.org/works/W3095523213.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W72835126","https://openalex.org/W580706992","https://openalex.org/W1592870802","https://openalex.org/W1811783050","https://openalex.org/W1977344200","https://openalex.org/W1984963559","https://openalex.org/W1990996211","https://openalex.org/W1996909392","https://openalex.org/W2005004164","https://openalex.org/W2017380851","https://openalex.org/W2029516277","https://openalex.org/W2035618305","https://openalex.org/W2068921257","https://openalex.org/W2070979531","https://openalex.org/W2083698510","https://openalex.org/W2101289352","https://openalex.org/W2104548316","https://openalex.org/W2105637133","https://openalex.org/W2109520345","https://openalex.org/W2111412754","https://openalex.org/W2113457186","https://openalex.org/W2126428749","https://openalex.org/W2132260239","https://openalex.org/W2133256064","https://openalex.org/W2137768688","https://openalex.org/W2141504923","https://openalex.org/W2142291585","https://openalex.org/W2145441153","https://openalex.org/W2151142189","https://openalex.org/W2153360330","https://openalex.org/W2156067087","https://openalex.org/W2157009395","https://openalex.org/W2159675211","https://openalex.org/W2167227766","https://openalex.org/W2170086807","https://openalex.org/W2170933940","https://openalex.org/W2181908191","https://openalex.org/W2289810872","https://openalex.org/W2538584349","https://openalex.org/W2546157736","https://openalex.org/W2784713136","https://openalex.org/W2883080699","https://openalex.org/W2886432125","https://openalex.org/W2913768539","https://openalex.org/W2943109925","https://openalex.org/W2948824749","https://openalex.org/W3001118548","https://openalex.org/W3001343166","https://openalex.org/W3001897055","https://openalex.org/W3004896487","https://openalex.org/W3007580879","https://openalex.org/W3012550011","https://openalex.org/W3014704780","https://openalex.org/W3032497075","https://openalex.org/W4248467737","https://openalex.org/W6763254440","https://openalex.org/W6991248244"],"related_works":["https://openalex.org/W3009669391","https://openalex.org/W3127156785","https://openalex.org/W3005417802","https://openalex.org/W3043486364","https://openalex.org/W3095730491","https://openalex.org/W4220712676","https://openalex.org/W4290085574","https://openalex.org/W3080407960","https://openalex.org/W3006642361","https://openalex.org/W4280491013"],"abstract_inverted_index":{"Accessory":[0],"proteins":[1,26,91,115,131,162,171,195,237],"play":[2],"important":[3],"roles":[4],"in":[5,86,123,206],"the":[6,18,31,79,87,102,168,207],"interaction":[7,188],"between":[8,110],"coronaviruses":[9,122],"and":[10,21,34,60,99,105,112,136,139,147,154,173,192,213,229,244],"their":[11,239],"hosts.":[12,125],"Accordingly,":[13],"a":[14,42,73,223,231],"comprehensive":[15,232],"study":[16,221],"of":[17,24,37,78,89,92,129,170,186,190],"compositional":[19,74],"diversity":[20,138],"evolutionary":[22,242],"patterns":[23],"accessory":[25,90,114,130,161,194,236],"is":[27],"critical":[28],"to":[29,71,120,215],"understanding":[30],"host":[32,245],"adaptation":[33],"epidemic":[35],"variation":[36,109],"coronaviruses.":[38],"Here,":[39],"we":[40,65],"developed":[41],"standardized":[43],"genome":[44,227],"annotation":[45,228],"tool":[46,224],"for":[47,76,94,150,225,234],"coronavirus":[48,69,226,235],"(CoroAnnoter)":[49],"by":[50],"combining":[51],"open":[52],"reading":[53],"frame":[54],"prediction,":[55],"transcription":[56],"regulatory":[57],"sequence":[58],"recognition":[59],"homologous":[61],"alignment.":[62],"Using":[63],"CoroAnnoter,":[64],"annotated":[66],"39":[67],"representative":[68],"strains":[70],"form":[72],"profile":[75,233],"all":[77],"accessary":[80],"proteins.":[81,183],"Large":[82],"variations":[83],"were":[84],"observed":[85],"number":[88],"1-10":[93],"different":[95],"coronaviruses,":[96],"with":[97],"SARS-CoV-2":[98,113,191],"SARS-CoV":[100,111,193],"having":[101],"most":[103],"(9":[104],"10,":[106],"respectively).":[107],"The":[108,126],"could":[116,140],"be":[117,141],"traced":[118],"back":[119],"related":[121],"other":[124],"genomic":[127],"distribution":[128],"had":[132],"significant":[133],"intra-genus":[134],"conservation":[135],"inter-genus":[137],"grouped":[142],"into":[143],"1,":[144],"4,":[145],"2":[146],"1":[148],"types":[149],"alpha-,":[151],"beta-,":[152],"gamma-,":[153],"delta-coronaviruses,":[155],"respectively.":[156],"Evolutionary":[157],"analysis":[158],"suggested":[159],"that":[160,197],"are":[163,178],"more":[164,179],"conservative":[165],"locating":[166],"before":[167],"N-terminal":[169],"E":[172],"M":[174],"(E-M),":[175],"while":[176],"they":[177,198],"diverse":[180],"after":[181],"these":[182],"Furthermore,":[184],"comparison":[185],"virus-host":[187],"networks":[189],"showed":[196],"share":[199],"multiple":[200],"antiviral":[201],"signaling":[202],"pathways,":[203],"those":[204],"involved":[205],"apoptotic":[208],"process,":[209],"viral":[210],"life":[211],"cycle":[212],"response":[214],"oxidative":[216],"stress.":[217],"In":[218],"summary,":[219],"our":[220],"provides":[222],"builds":[230],"covering":[238],"composition,":[240],"classification,":[241],"pattern":[243],"interaction.":[246]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":11}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
