{"id":"https://openalex.org/W3092033932","doi":"https://doi.org/10.1093/bib/bbaa253","title":"A comprehensive comparison of residue-level methylation levels with the regression-based gene-level methylation estimations by ReGear","display_name":"A comprehensive comparison of residue-level methylation levels with the regression-based gene-level methylation estimations by ReGear","publication_year":2020,"publication_date":"2020-09-08","ids":{"openalex":"https://openalex.org/W3092033932","doi":"https://doi.org/10.1093/bib/bbaa253","mag":"3092033932","pmid":"https://pubmed.ncbi.nlm.nih.gov/33048108"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa253","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa253","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036474038","display_name":"Jinpu Cai","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinpu Cai","raw_affiliation_strings":["Jilin University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I4210136497","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074623897","display_name":"Yuyang Xu","orcid":"https://orcid.org/0000-0002-3962-3526"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuyang Xu","raw_affiliation_strings":["Jilin University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I4210136497","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100448121","display_name":"Wen Zhang","orcid":"https://orcid.org/0000-0001-5221-2628"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wen Zhang","raw_affiliation_strings":["Jilin University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I4210136497","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004879665","display_name":"Shiying Ding","orcid":"https://orcid.org/0009-0002-2641-0246"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shiying Ding","raw_affiliation_strings":["Jilin University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I4210136497","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101083216","display_name":"Yuewei Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuewei Sun","raw_affiliation_strings":["Jilin University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I4210136497","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028770232","display_name":"Jingyi Lyu","orcid":"https://orcid.org/0000-0003-0119-4487"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingyi Lyu","raw_affiliation_strings":["Jilin University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I4210136497","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034008160","display_name":"Meiyu Duan","orcid":"https://orcid.org/0000-0001-7171-2695"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meiyu Duan","raw_affiliation_strings":["Jilin University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I4210136497","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100715399","display_name":"Shuai Liu","orcid":"https://orcid.org/0000-0002-4192-7625"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuai Liu","raw_affiliation_strings":["Jilin University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I4210136497","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101463922","display_name":"Lan Huang","orcid":"https://orcid.org/0000-0003-3233-3777"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lan Huang","raw_affiliation_strings":["Jilin University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I4210136497","https://openalex.org/I194450716"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058786170","display_name":"Fengfeng Zhou","orcid":"https://orcid.org/0000-0002-8108-6007"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fengfeng Zhou","raw_affiliation_strings":["Jilin University"],"raw_orcid":"https://orcid.org/0000-0002-8108-6007","affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I4210136497","https://openalex.org/I194450716"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5058786170"],"corresponding_institution_ids":["https://openalex.org/I194450716","https://openalex.org/I4210136497"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.2501,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.54721094,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"22","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.6197999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.6197999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.06939999759197235,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.06889999657869339,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.791419267654419},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.7646294236183167},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5855914354324341},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5629000663757324},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4902055859565735},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.48981401324272156},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.4584692120552063},{"id":"https://openalex.org/keywords/illumina-methylation-assay","display_name":"Illumina Methylation Assay","score":0.4207792580127716},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.22458809614181519}],"concepts":[{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.791419267654419},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.7646294236183167},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5855914354324341},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5629000663757324},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4902055859565735},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.48981401324272156},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.4584692120552063},{"id":"https://openalex.org/C136953436","wikidata":"https://www.wikidata.org/wiki/Q6000286","display_name":"Illumina Methylation Assay","level":5,"score":0.4207792580127716},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.22458809614181519}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbaa253","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa253","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33048108","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33048108","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4005230002","display_name":null,"funder_award_id":"JJKH20180145KJ","funder_id":"https://openalex.org/F4320326270","funder_display_name":"Education Department of Jilin Province"}],"funders":[{"id":"https://openalex.org/F4320322300","display_name":"Jilin University","ror":"https://ror.org/00js3aw79"},{"id":"https://openalex.org/F4320326270","display_name":"Education Department of Jilin Province","ror":"https://ror.org/05782e512"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":96,"referenced_works":["https://openalex.org/W273955616","https://openalex.org/W298212978","https://openalex.org/W1517808374","https://openalex.org/W1560593431","https://openalex.org/W1584866165","https://openalex.org/W1770510060","https://openalex.org/W1817561967","https://openalex.org/W1831033366","https://openalex.org/W1964940342","https://openalex.org/W1980732460","https://openalex.org/W1980744841","https://openalex.org/W1992116297","https://openalex.org/W1998517881","https://openalex.org/W2026131661","https://openalex.org/W2027806855","https://openalex.org/W2028934624","https://openalex.org/W2031126850","https://openalex.org/W2060697752","https://openalex.org/W2075596490","https://openalex.org/W2103291381","https://openalex.org/W2111072639","https://openalex.org/W2117675660","https://openalex.org/W2119912419","https://openalex.org/W2121417064","https://openalex.org/W2130752875","https://openalex.org/W2146007051","https://openalex.org/W2150194502","https://openalex.org/W2152057649","https://openalex.org/W2152272337","https://openalex.org/W2185207072","https://openalex.org/W2248907500","https://openalex.org/W2264799017","https://openalex.org/W2341128841","https://openalex.org/W2400930838","https://openalex.org/W2409146838","https://openalex.org/W2478496062","https://openalex.org/W2510420694","https://openalex.org/W2531153177","https://openalex.org/W2550716620","https://openalex.org/W2577601702","https://openalex.org/W2591061603","https://openalex.org/W2593842564","https://openalex.org/W2611750352","https://openalex.org/W2612690371","https://openalex.org/W2620008148","https://openalex.org/W2744040456","https://openalex.org/W2748606465","https://openalex.org/W2762082538","https://openalex.org/W2777600236","https://openalex.org/W2792233096","https://openalex.org/W2801634368","https://openalex.org/W2804344327","https://openalex.org/W2808054557","https://openalex.org/W2891601768","https://openalex.org/W2900694973","https://openalex.org/W2904265522","https://openalex.org/W2905984083","https://openalex.org/W2908437265","https://openalex.org/W2909174594","https://openalex.org/W2922334074","https://openalex.org/W2940767756","https://openalex.org/W2942734767","https://openalex.org/W2946723940","https://openalex.org/W2946921858","https://openalex.org/W2947161758","https://openalex.org/W2949949116","https://openalex.org/W2950565866","https://openalex.org/W2951434619","https://openalex.org/W2965136811","https://openalex.org/W2972380686","https://openalex.org/W2973725019","https://openalex.org/W2974813020","https://openalex.org/W2979665139","https://openalex.org/W2982633155","https://openalex.org/W2991542136","https://openalex.org/W2991729658","https://openalex.org/W2996261594","https://openalex.org/W2998678080","https://openalex.org/W3005222164","https://openalex.org/W3007864287","https://openalex.org/W3009302866","https://openalex.org/W3009702481","https://openalex.org/W3009859135","https://openalex.org/W3010107025","https://openalex.org/W3010808949","https://openalex.org/W3011679543","https://openalex.org/W3013328934","https://openalex.org/W3014623641","https://openalex.org/W3021249782","https://openalex.org/W3032924074","https://openalex.org/W3033369742","https://openalex.org/W4251881819","https://openalex.org/W4254802017","https://openalex.org/W6610017368","https://openalex.org/W6630956611","https://openalex.org/W6775307801"],"related_works":["https://openalex.org/W2214376880","https://openalex.org/W3212149434","https://openalex.org/W2073893804","https://openalex.org/W2291484187","https://openalex.org/W2902329290","https://openalex.org/W2139872319","https://openalex.org/W2052355316","https://openalex.org/W2046964473","https://openalex.org/W2107880877","https://openalex.org/W2151182744"],"abstract_inverted_index":{"MOTIVATION:":[0],"DNA":[1,15,18,46],"methylation":[2,19,47,77,101,111,139,153,174,190,206,226],"is":[3,103,131],"a":[4,80,84,106],"biological":[5],"process":[6],"impacting":[7],"the":[8,13,32,38,49,55,75,88,94,110,115,135,149,159,172,183,197,203,224,234],"gene":[9,60,81,100,150,173,205],"functions":[10],"without":[11],"changing":[12],"underlying":[14],"sequence.":[16],"The":[17,59,99,165,237],"machinery":[20],"usually":[21],"attaches":[22],"methyl":[23],"groups":[24],"to":[25,147],"some":[26,43,66],"specific":[27],"cytosine":[28,152],"residues,":[29],"which":[30],"modify":[31],"chromatin":[33],"architectures.":[34],"Such":[35],"modifications":[36],"in":[37,201,233],"promoter":[39],"regions":[40],"will":[41],"inactivate":[42],"tumor-suppressor":[44],"genes.":[45],"within":[48,117],"coding":[50],"region":[51],"may":[52,62,82],"significantly":[53],"reduce":[54],"transcription":[56],"elongation":[57],"efficiency.":[58],"function":[61],"be":[63],"tuned":[64],"through":[65],"cytosines":[67,116],"are":[68,228,245],"methylated.":[69],"METHODS:":[70],"This":[71],"study":[72],"hypothesizes":[73],"that":[74],"overall":[76],"level":[78,102],"across":[79],"have":[83,192],"better":[85],"association":[86],"with":[87,158,182,196],"sample":[89,160],"labels":[90,161],"like":[91],"diseases":[92],"than":[93],"methylations":[95],"of":[96,113,123,217,223,230],"individual":[97],"cytosines.":[98],"formulated":[104],"as":[105],"regression":[107,218],"model":[108],"using":[109,171],"levels":[112,154,207],"all":[114],"this":[118],"gene.":[119],"A":[120,142],"comprehensive":[121,143],"evaluation":[122,144],"various":[124,209],"feature":[125],"selection":[126],"algorithms":[127,130,219],"and":[128,137,151,162,220,243],"classification":[129,163],"carried":[132],"out":[133],"between":[134],"gene-level":[136,225],"residue-level":[138,189],"levels.":[140,175],"RESULTS:":[141],"was":[145,168],"conducted":[146],"compare":[148],"for":[155],"their":[156],"associations":[157,181,195],"performances.":[164],"unsupervised":[166],"clustering":[167],"also":[169],"improved":[170,208],"Some":[176],"genes":[177],"demonstrated":[178],"statistically":[179,193],"significant":[180,194],"class":[184,198],"label,":[185],"even":[186],"when":[187],"no":[188],"features":[191],"label.":[199],"So":[200],"summary,":[202],"trained":[204],"methylome-based":[210],"machine":[211],"learning":[212],"models.":[213],"Both":[214],"methodology":[215],"development":[216],"experimental":[221],"validation":[222],"biomarkers":[227],"worth":[229],"further":[231],"investigations":[232],"future":[235],"studies.":[236],"source":[238],"code,":[239],"example":[240],"data":[241],"files":[242],"manual":[244],"available":[246],"at":[247],"http://www.healthinformaticslab.org/supp/.":[248]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
