{"id":"https://openalex.org/W3093048084","doi":"https://doi.org/10.1093/bib/bbaa242","title":"DeepHPV: a deep learning model to predict human papillomavirus integration sites","display_name":"DeepHPV: a deep learning model to predict human papillomavirus integration sites","publication_year":2020,"publication_date":"2020-09-01","ids":{"openalex":"https://openalex.org/W3093048084","doi":"https://doi.org/10.1093/bib/bbaa242","mag":"3093048084","pmid":"https://pubmed.ncbi.nlm.nih.gov/33059369"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa242","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa242","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100771409","display_name":"Rui Tian","orcid":"https://orcid.org/0000-0002-2305-6395"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210128921","display_name":"The First Affiliated Hospital, Sun Yat-sen University","ror":"https://ror.org/037p24858","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128921"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rui Tian","raw_affiliation_strings":["Translational Medicine of the First Affiliated Hospital, Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"Translational Medicine of the First Affiliated Hospital, Sun Yat-sen University","institution_ids":["https://openalex.org/I4210128921","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100786686","display_name":"Ping Zhou","orcid":"https://orcid.org/0000-0002-0306-3520"},"institutions":[{"id":"https://openalex.org/I4210122949","display_name":"Dongguan People\u2019s Hospital","ror":"https://ror.org/022s5gm85","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210122949"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ping Zhou","raw_affiliation_strings":["Dongguan Maternal and Child Health Care Hospital"],"affiliations":[{"raw_affiliation_string":"Dongguan Maternal and Child Health Care Hospital","institution_ids":["https://openalex.org/I4210122949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100415395","display_name":"Mengyuan Li","orcid":"https://orcid.org/0000-0001-6856-6463"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210128921","display_name":"The First Affiliated Hospital, Sun Yat-sen University","ror":"https://ror.org/037p24858","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128921"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengyuan Li","raw_affiliation_strings":["Department of Obstetrics and Gynecology at the First Affiliated Hospital, Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"Department of Obstetrics and Gynecology at the First Affiliated Hospital, Sun Yat-sen University","institution_ids":["https://openalex.org/I4210128921","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101967369","display_name":"Jinfeng Tan","orcid":"https://orcid.org/0000-0002-9692-531X"},"institutions":[{"id":"https://openalex.org/I4210128921","display_name":"The First Affiliated Hospital, Sun Yat-sen University","ror":"https://ror.org/037p24858","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128921"]},{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinfeng Tan","raw_affiliation_strings":["First Affiliated Hospital, Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"First Affiliated Hospital, Sun Yat-sen University","institution_ids":["https://openalex.org/I4210128921","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102922674","display_name":"Zifeng Cui","orcid":"https://orcid.org/0000-0003-0879-9956"},"institutions":[{"id":"https://openalex.org/I4210128921","display_name":"The First Affiliated Hospital, Sun Yat-sen University","ror":"https://ror.org/037p24858","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128921"]},{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zifeng Cui","raw_affiliation_strings":["First Affiliated Hospital, Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"First Affiliated Hospital, Sun Yat-sen University","institution_ids":["https://openalex.org/I4210128921","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000048962","display_name":"Wei Xu","orcid":"https://orcid.org/0000-0002-8113-9746"},"institutions":[{"id":"https://openalex.org/I4210128921","display_name":"The First Affiliated Hospital, Sun Yat-sen University","ror":"https://ror.org/037p24858","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128921"]},{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Xu","raw_affiliation_strings":["Department of Obstetrics and Gynecology at the First Affiliated Hospital, Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"Department of Obstetrics and Gynecology at the First Affiliated Hospital, Sun Yat-sen University","institution_ids":["https://openalex.org/I4210128921","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045789277","display_name":"Jingyue Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I4210128921","display_name":"The First Affiliated Hospital, Sun Yat-sen University","ror":"https://ror.org/037p24858","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128921"]},{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingyue Wei","raw_affiliation_strings":["Department of Obstetrics and Gynecology at the First Affiliated Hospital, Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"Department of Obstetrics and Gynecology at the First Affiliated Hospital, Sun Yat-sen University","institution_ids":["https://openalex.org/I4210128921","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041682827","display_name":"Jingjing Zhu","orcid":"https://orcid.org/0000-0002-9691-6034"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210128921","display_name":"The First Affiliated Hospital, Sun Yat-sen University","ror":"https://ror.org/037p24858","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128921"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingjing Zhu","raw_affiliation_strings":["Department of Obstetrics and Gynecology of the First Affiliated Hospital, Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"Department of Obstetrics and Gynecology of the First Affiliated Hospital, Sun Yat-sen University","institution_ids":["https://openalex.org/I4210128921","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101527709","display_name":"Zhuang Jin","orcid":"https://orcid.org/0000-0002-3533-5324"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210128921","display_name":"The First Affiliated Hospital, Sun Yat-sen University","ror":"https://ror.org/037p24858","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128921"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhuang Jin","raw_affiliation_strings":["First Affiliated Hospital, Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"First Affiliated Hospital, Sun Yat-sen University","institution_ids":["https://openalex.org/I4210128921","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100611828","display_name":"Chen Cao","orcid":"https://orcid.org/0000-0002-3739-5240"},"institutions":[{"id":"https://openalex.org/I4210143568","display_name":"Central Hospital of Wuhan","ror":"https://ror.org/04qs2sz84","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210143568"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Cao","raw_affiliation_strings":["Central Hospital of Wuhan, China"],"affiliations":[{"raw_affiliation_string":"Central Hospital of Wuhan, China","institution_ids":["https://openalex.org/I4210143568"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023550805","display_name":"Weiwen Fan","orcid":"https://orcid.org/0000-0002-5874-6089"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weiwen Fan","raw_affiliation_strings":["College of Medicine at the Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"College of Medicine at the Sun Yat-sen University","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081965249","display_name":"Weiling Xie","orcid":"https://orcid.org/0000-0001-8132-6982"},"institutions":[{"id":"https://openalex.org/I4210128921","display_name":"The First Affiliated Hospital, Sun Yat-sen University","ror":"https://ror.org/037p24858","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128921"]},{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weiling Xie","raw_affiliation_strings":["First Affiliated Hospital, Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"First Affiliated Hospital, Sun Yat-sen University","institution_ids":["https://openalex.org/I4210128921","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003874296","display_name":"Zhaoyue Huang","orcid":"https://orcid.org/0000-0002-8553-6941"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210128921","display_name":"The First Affiliated Hospital, Sun Yat-sen University","ror":"https://ror.org/037p24858","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128921"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhaoyue Huang","raw_affiliation_strings":["First Affiliated Hospital, Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"First Affiliated Hospital, Sun Yat-sen University","institution_ids":["https://openalex.org/I4210128921","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112664705","display_name":"Hongxian Xie","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hongxian Xie","raw_affiliation_strings":["GeneRulor Company Bio-X Lab"],"affiliations":[{"raw_affiliation_string":"GeneRulor Company Bio-X Lab","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100384566","display_name":"Zeshan You","orcid":"https://orcid.org/0000-0002-1262-2929"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210128921","display_name":"The First Affiliated Hospital, Sun Yat-sen University","ror":"https://ror.org/037p24858","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128921"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zeshan You","raw_affiliation_strings":["First Affiliated Hospital, Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"First Affiliated Hospital, Sun Yat-sen University","institution_ids":["https://openalex.org/I4210128921","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101683851","display_name":"Gang Niu","orcid":"https://orcid.org/0000-0002-1694-4239"},"institutions":[{"id":"https://openalex.org/I4210128921","display_name":"The First Affiliated Hospital, Sun Yat-sen University","ror":"https://ror.org/037p24858","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128921"]},{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gang Niu","raw_affiliation_strings":["Department of Obstetrics and Gynecology of the First Affiliated Hospital, Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"Department of Obstetrics and Gynecology of the First Affiliated Hospital, Sun Yat-sen University","institution_ids":["https://openalex.org/I4210128921","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071713352","display_name":"Canbiao Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I187400657","display_name":"South China Normal University","ror":"https://ror.org/01kq0pv72","country_code":"CN","type":"education","lineage":["https://openalex.org/I187400657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Canbiao Wu","raw_affiliation_strings":["Institute for Brain Research and Rehabilitation at the South China Normal University"],"affiliations":[{"raw_affiliation_string":"Institute for Brain Research and Rehabilitation at the South China Normal University","institution_ids":["https://openalex.org/I187400657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101902821","display_name":"Xiaofang Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210128921","display_name":"The First Affiliated Hospital, Sun Yat-sen University","ror":"https://ror.org/037p24858","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128921"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaofang Guo","raw_affiliation_strings":["Department of Medical Oncology of the Eastern Hospital at the First Affiliated Hospital, Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"Department of Medical Oncology of the Eastern Hospital at the First Affiliated Hospital, Sun Yat-sen University","institution_ids":["https://openalex.org/I4210128921","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103549391","display_name":"Xuchu Weng","orcid":null},"institutions":[{"id":"https://openalex.org/I187400657","display_name":"South China Normal University","ror":"https://ror.org/01kq0pv72","country_code":"CN","type":"education","lineage":["https://openalex.org/I187400657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuchu Weng","raw_affiliation_strings":["Institute for Brain Research and Rehabilitation at the South China Normal University"],"affiliations":[{"raw_affiliation_string":"Institute for Brain Research and Rehabilitation at the South China Normal University","institution_ids":["https://openalex.org/I187400657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101574188","display_name":"Xun Tian","orcid":"https://orcid.org/0000-0002-4602-7589"},"institutions":[{"id":"https://openalex.org/I4210143568","display_name":"Central Hospital of Wuhan","ror":"https://ror.org/04qs2sz84","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210143568"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xun Tian","raw_affiliation_strings":["Central Hospital of Wuhan"],"affiliations":[{"raw_affiliation_string":"Central Hospital of Wuhan","institution_ids":["https://openalex.org/I4210143568"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103974227","display_name":"Fubing Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210122949","display_name":"Dongguan People\u2019s Hospital","ror":"https://ror.org/022s5gm85","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210122949"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fubing Yu","raw_affiliation_strings":["Dongguan Maternal and Child Health Care Hospital"],"affiliations":[{"raw_affiliation_string":"Dongguan Maternal and Child Health Care Hospital","institution_ids":["https://openalex.org/I4210122949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055725244","display_name":"Zhiying Yu","orcid":"https://orcid.org/0000-0002-1533-1246"},"institutions":[{"id":"https://openalex.org/I4210164332","display_name":"Shenzhen Second People's Hospital","ror":"https://ror.org/05c74bq69","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210164332"]},{"id":"https://openalex.org/I4210145292","display_name":"Shenzhen University Health Science Center","ror":"https://ror.org/04yjbr930","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210145292"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhiying Yu","raw_affiliation_strings":["Department of Gynecology, Shenzhen Second People's Hospital/the First Affiliated Hospital of Shenzhen University Health Science Center"],"affiliations":[{"raw_affiliation_string":"Department of Gynecology, Shenzhen Second People's Hospital/the First Affiliated Hospital of Shenzhen University Health Science Center","institution_ids":["https://openalex.org/I4210164332","https://openalex.org/I4210145292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032257731","display_name":"Jiuxing Liang","orcid":"https://orcid.org/0000-0003-2972-1357"},"institutions":[{"id":"https://openalex.org/I187400657","display_name":"South China Normal University","ror":"https://ror.org/01kq0pv72","country_code":"CN","type":"education","lineage":["https://openalex.org/I187400657"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jiuxing Liang","raw_affiliation_strings":["Institute for Brain Research and Rehabilitation at the South China Normal University"],"affiliations":[{"raw_affiliation_string":"Institute for Brain Research and Rehabilitation at the South China Normal University","institution_ids":["https://openalex.org/I187400657"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081382122","display_name":"Zheng Hu","orcid":"https://orcid.org/0000-0001-9306-9442"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zheng Hu","raw_affiliation_strings":["Gynecological Oncology of the First Affiliated Hospital, Precision Medicine Institute, Sun Yat-sen University"],"affiliations":[{"raw_affiliation_string":"Gynecological Oncology of the First Affiliated Hospital, Precision Medicine Institute, Sun Yat-sen University","institution_ids":["https://openalex.org/I157773358"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":24,"corresponding_author_ids":["https://openalex.org/A5032257731","https://openalex.org/A5055725244","https://openalex.org/A5081382122"],"corresponding_institution_ids":["https://openalex.org/I157773358","https://openalex.org/I187400657","https://openalex.org/I4210145292","https://openalex.org/I4210164332"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.3024,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.81569191,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"22","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10146","display_name":"Cervical Cancer and HPV Research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10146","display_name":"Cervical Cancer and HPV Research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6559496521949768},{"id":"https://openalex.org/keywords/human-papillomavirus","display_name":"Human papillomavirus","score":0.6127374172210693},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4562391936779022},{"id":"https://openalex.org/keywords/receiver-operating-characteristic","display_name":"Receiver operating characteristic","score":0.4474326968193054},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4428477883338928},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3706989288330078},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34806302189826965},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1278776228427887}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6559496521949768},{"id":"https://openalex.org/C2994532551","wikidata":"https://www.wikidata.org/wiki/Q184627","display_name":"Human papillomavirus","level":2,"score":0.6127374172210693},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4562391936779022},{"id":"https://openalex.org/C58471807","wikidata":"https://www.wikidata.org/wiki/Q327120","display_name":"Receiver operating characteristic","level":2,"score":0.4474326968193054},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4428477883338928},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3706989288330078},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34806302189826965},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1278776228427887},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016662","descriptor_name":"Virus Integration","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016662","descriptor_name":"Virus Integration","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016662","descriptor_name":"Virus Integration","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030361","descriptor_name":"Papillomavirus Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D030361","descriptor_name":"Papillomavirus Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D030361","descriptor_name":"Papillomavirus Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D030361","descriptor_name":"Papillomavirus Infections","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D030361","descriptor_name":"Papillomavirus Infections","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D030361","descriptor_name":"Papillomavirus Infections","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D052685","descriptor_name":"Alphapapillomavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D052685","descriptor_name":"Alphapapillomavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D052685","descriptor_name":"Alphapapillomavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D052685","descriptor_name":"Alphapapillomavirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D052685","descriptor_name":"Alphapapillomavirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D052685","descriptor_name":"Alphapapillomavirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbaa242","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbaa242","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33059369","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33059369","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1575453399","display_name":null,"funder_award_id":"81761148025","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4981899767","display_name":null,"funder_award_id":"2020M672995","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G8204405283","display_name":null,"funder_award_id":"BX20200398","funder_id":"https://openalex.org/F4320335768","funder_display_name":"National Postdoctoral Program for Innovative Talents"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320335768","display_name":"National Postdoctoral Program for Innovative Talents","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W114098355","https://openalex.org/W1996968068","https://openalex.org/W2009504586","https://openalex.org/W2011301426","https://openalex.org/W2014677321","https://openalex.org/W2017474562","https://openalex.org/W2023410485","https://openalex.org/W2040192661","https://openalex.org/W2056956377","https://openalex.org/W2057241466","https://openalex.org/W2068965703","https://openalex.org/W2081116295","https://openalex.org/W2082481679","https://openalex.org/W2084247018","https://openalex.org/W2098158789","https://openalex.org/W2107770226","https://openalex.org/W2117812871","https://openalex.org/W2131255017","https://openalex.org/W2133564696","https://openalex.org/W2140952049","https://openalex.org/W2153420148","https://openalex.org/W2158052500","https://openalex.org/W2158253659","https://openalex.org/W2269870390","https://openalex.org/W2307001346","https://openalex.org/W2320342345","https://openalex.org/W2394932179","https://openalex.org/W2473141600","https://openalex.org/W2520412382","https://openalex.org/W2575837388","https://openalex.org/W2578831276","https://openalex.org/W2605196547","https://openalex.org/W2611586225","https://openalex.org/W2614952856","https://openalex.org/W2767972229","https://openalex.org/W2790404504","https://openalex.org/W2918598256","https://openalex.org/W2949535114","https://openalex.org/W2962772482","https://openalex.org/W2964308564","https://openalex.org/W2979561860","https://openalex.org/W2985532529","https://openalex.org/W4248995229","https://openalex.org/W4301264738","https://openalex.org/W6679434410"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Human":[0],"papillomavirus":[1],"(HPV)":[2],"integrating":[3],"into":[4,225],"human":[5],"genome":[6],"is":[7,30,42,214,233],"the":[8,77,88,96,106,120,148,161,179],"main":[9],"cause":[10],"of":[11,100,110],"cervical":[12],"carcinogenesis.":[13],"HPV":[14,34,58,70,82,226],"integration":[15,35,59,71,83,227],"selection":[16],"preference":[17,228],"shows":[18],"strong":[19],"dependence":[20],"on":[21,142],"local":[22],"genomic":[23],"environment.":[24],"Due":[25],"to":[26,32,45,56,75,123],"this":[27],"theory,":[28],"it":[29],"possible":[31],"predict":[33,57],"sites.":[36,211],"However,":[37],"a":[38,215],"published":[39],"bioinformatic":[40],"tool":[41],"not":[43],"available":[44,234],"date.":[46],"Thus,":[47],"we":[48,137,171],"developed":[49],"an":[50,93,103,236],"attention-based":[51],"deep":[52,219],"learning":[53,62,220],"model":[54,121,149,162],"DeepHPV":[55,91,176,213,232],"sites":[60,72,84,183],"by":[61],"environment":[63],"features":[64],"automatically.":[65],"In":[66],"total,":[67],"3608":[68],"known":[69],"were":[73,85],"applied":[74],"train":[76],"model,":[78,221],"and":[79,102,114,125,129,131,146,177,217,229,239],"584":[80],"reviewed":[81],"used":[86],"as":[87,235],"testing":[89],"dataset.":[90],"showed":[92],"area":[94,104],"under":[95,105],"receiver-operating":[97],"characteristic":[98],"(AUROC)":[99],"0.6336":[101],"precision":[107],"recall":[108],"(AUPR)":[109],"0.5670.":[111],"Adding":[112],"RepeatMasker":[113,164],"TCGA":[115,151],"Pan":[116,152],"Cancer":[117,153],"peaks":[118,165],"improved":[119],"performance":[122],"0.8464":[124],"0.8501":[126],"in":[127,133,175],"AUROC":[128],"0.7985":[130],"0.8106":[132],"AUPR,":[134],"respectively.":[135],"Next,":[136],"tested":[138],"these":[139],"trained":[140],"models":[141],"independent":[143],"database":[144],"VISDB":[145],"found":[147],"adding":[150,163],"performed":[154],"better":[155],"(AUROC:":[156,166],"0.7175,":[157],"AUPR:":[158,168],"0.6284)":[159],"than":[160],"0.6102,":[167],"0.5577).":[169],"Moreover,":[170],"introduced":[172],"attention":[173,209],"mechanism":[174],"enriched":[178],"transcription":[180],"factor":[181],"binding":[182],"including":[184],"BHLHA15,":[185],"CHR,":[186],"COUP-TFII,":[187],"DMRTA2,":[188],"E2A,":[189],"HIC1,":[190],"INR,":[191],"NPAS,":[192],"Nr5a2,":[193],"RARa,":[194],"SCL,":[195],"Snail1,":[196],"Sox10,":[197],"Sox3,":[198],"Sox4,":[199],"Sox6,":[200],"STAT6,":[201],"Tbet,":[202],"Tbx5,":[203],"TEAD,":[204],"Tgif2,":[205],"ZNF189,":[206],"ZNF416":[207],"near":[208],"intensive":[210],"Together,":[212],"robust":[216],"explainable":[218],"providing":[222],"new":[223],"insights":[224],"mechanism.":[230],"Availability:":[231],"open-source":[237],"software":[238],"can":[240],"be":[241],"downloaded":[242],"from":[243],"https://github.com/JiuxingLiang/DeepHPV.git,":[244],"Contact:":[245],"huzheng1998@163.com,":[246],"liangjiuxing@m.scnu.edu.cn,":[247],"lizheyzy@163.com.":[248]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
