{"id":"https://openalex.org/W3090491025","doi":"https://doi.org/10.1093/bib/bbaa229","title":"A survey on deep learning in DNA/RNA motif mining","display_name":"A survey on deep learning in DNA/RNA motif mining","publication_year":2020,"publication_date":"2020-08-26","ids":{"openalex":"https://openalex.org/W3090491025","doi":"https://doi.org/10.1093/bib/bbaa229","mag":"3090491025","pmid":"https://pubmed.ncbi.nlm.nih.gov/33005921"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbaa229","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa229","pdf_url":"https://academic.oup.com/bib/article-pdf/22/4/bbaa229/39135866/bbaa229.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/22/4/bbaa229/39135866/bbaa229.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086358231","display_name":"Ying He","orcid":"https://orcid.org/0000-0002-9592-7727"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying He","raw_affiliation_strings":["computer science and technology at Tongji University, China"],"affiliations":[{"raw_affiliation_string":"computer science and technology at Tongji University, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089051425","display_name":"Zhen Shen","orcid":"https://orcid.org/0000-0001-7572-9195"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Shen","raw_affiliation_strings":["computer science and technology at Tongji University, China"],"affiliations":[{"raw_affiliation_string":"computer science and technology at Tongji University, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062540383","display_name":"Qinhu Zhang","orcid":"https://orcid.org/0000-0002-4232-7736"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinhu Zhang","raw_affiliation_strings":["computer science and technology at Tongji University, China"],"affiliations":[{"raw_affiliation_string":"computer science and technology at Tongji University, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054096753","display_name":"Siguo Wang","orcid":"https://orcid.org/0000-0002-3244-3629"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siguo Wang","raw_affiliation_strings":["computer science and technology at Tongji University, China"],"affiliations":[{"raw_affiliation_string":"computer science and technology at Tongji University, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113170254","display_name":"De-Shuang Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"De-Shuang Huang","raw_affiliation_strings":["Institute of Machines Learning and Systems Biology, Tongji University"],"affiliations":[{"raw_affiliation_string":"Institute of Machines Learning and Systems Biology, Tongji University","institution_ids":["https://openalex.org/I116953780"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5113170254"],"corresponding_institution_ids":["https://openalex.org/I116953780"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":6.0092,"has_fulltext":false,"cited_by_count":104,"citation_normalized_percentile":{"value":0.97434717,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"22","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.8565767407417297},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7433075904846191},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7238550186157227},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.6748442649841309},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5885586738586426},{"id":"https://openalex.org/keywords/recurrent-neural-network","display_name":"Recurrent neural network","score":0.5590937733650208},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5373154878616333},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.5090398192405701},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.43125295639038086},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.4154275059700012}],"concepts":[{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.8565767407417297},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7433075904846191},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7238550186157227},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.6748442649841309},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5885586738586426},{"id":"https://openalex.org/C147168706","wikidata":"https://www.wikidata.org/wiki/Q1457734","display_name":"Recurrent neural network","level":3,"score":0.5590937733650208},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5373154878616333},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.5090398192405701},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.43125295639038086},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.4154275059700012},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbaa229","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa229","pdf_url":"https://academic.oup.com/bib/article-pdf/22/4/bbaa229/39135866/bbaa229.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33005921","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33005921","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8293829","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8293829","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbaa229","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbaa229","pdf_url":"https://academic.oup.com/bib/article-pdf/22/4/bbaa229/39135866/bbaa229.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.5199999809265137}],"awards":[{"id":"https://openalex.org/G1083522900","display_name":null,"funder_award_id":"61702371","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1307575636","display_name":null,"funder_award_id":"61932008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1596993240","display_name":null,"funder_award_id":"61772370","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3263865980","display_name":null,"funder_award_id":"61520106006","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3425444037","display_name":null,"funder_award_id":"2018AAA0100100","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G344637341","display_name":null,"funder_award_id":"61772357","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6271259443","display_name":null,"funder_award_id":"2018SHZDZX01","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G710220644","display_name":null,"funder_award_id":"61672382","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7352770851","display_name":null,"funder_award_id":"2017M611619","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G74711194","display_name":null,"funder_award_id":"61732012","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8031058355","display_name":null,"funder_award_id":"61861146002","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8417010444","display_name":null,"funder_award_id":"61672203","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8543904368","display_name":null,"funder_award_id":"61532008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G994200641","display_name":null,"funder_award_id":"2018YFA0902600","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320321885","display_name":"Science and Technology Commission of Shanghai Municipality","ror":"https://ror.org/03kt66j61"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3090491025.pdf","grobid_xml":"https://content.openalex.org/works/W3090491025.grobid-xml"},"referenced_works_count":125,"referenced_works":["https://openalex.org/W295894637","https://openalex.org/W1019830208","https://openalex.org/W1499798127","https://openalex.org/W1501531009","https://openalex.org/W1531668109","https://openalex.org/W1951403192","https://openalex.org/W1975924111","https://openalex.org/W1978173716","https://openalex.org/W1994067196","https://openalex.org/W1997535872","https://openalex.org/W2023178295","https://openalex.org/W2032231928","https://openalex.org/W2033201031","https://openalex.org/W2038093918","https://openalex.org/W2039991524","https://openalex.org/W2043699100","https://openalex.org/W2089783852","https://openalex.org/W2097175728","https://openalex.org/W2103447044","https://openalex.org/W2105249891","https://openalex.org/W2109459651","https://openalex.org/W2110738405","https://openalex.org/W2115577355","https://openalex.org/W2115761267","https://openalex.org/W2122732537","https://openalex.org/W2126468786","https://openalex.org/W2131571251","https://openalex.org/W2139617657","https://openalex.org/W2140240158","https://openalex.org/W2143701918","https://openalex.org/W2144015117","https://openalex.org/W2148014281","https://openalex.org/W2148219066","https://openalex.org/W2149769193","https://openalex.org/W2154776925","https://openalex.org/W2158266834","https://openalex.org/W2166425625","https://openalex.org/W2170226759","https://openalex.org/W2198606573","https://openalex.org/W2200283537","https://openalex.org/W2209154915","https://openalex.org/W2245239316","https://openalex.org/W2247766769","https://openalex.org/W2285139619","https://openalex.org/W2311607323","https://openalex.org/W2329659234","https://openalex.org/W2336509392","https://openalex.org/W2345512687","https://openalex.org/W2346541400","https://openalex.org/W2475602767","https://openalex.org/W2502949459","https://openalex.org/W2508611290","https://openalex.org/W2519744449","https://openalex.org/W2547971446","https://openalex.org/W2554078916","https://openalex.org/W2559655401","https://openalex.org/W2571752074","https://openalex.org/W2591130492","https://openalex.org/W2592216350","https://openalex.org/W2605449204","https://openalex.org/W2607045834","https://openalex.org/W2612690371","https://openalex.org/W2614851820","https://openalex.org/W2729704924","https://openalex.org/W2730472814","https://openalex.org/W2736280136","https://openalex.org/W2749546912","https://openalex.org/W2762309767","https://openalex.org/W2765651856","https://openalex.org/W2766447205","https://openalex.org/W2768956845","https://openalex.org/W2789652838","https://openalex.org/W2790244616","https://openalex.org/W2792402990","https://openalex.org/W2799487719","https://openalex.org/W2802487063","https://openalex.org/W2806351858","https://openalex.org/W2885815722","https://openalex.org/W2896262061","https://openalex.org/W2896457183","https://openalex.org/W2909854604","https://openalex.org/W2918598256","https://openalex.org/W2942090527","https://openalex.org/W2943591933","https://openalex.org/W2949275670","https://openalex.org/W2950354111","https://openalex.org/W2950695830","https://openalex.org/W2951748044","https://openalex.org/W2952935243","https://openalex.org/W2960370523","https://openalex.org/W2963636167","https://openalex.org/W2966369432","https://openalex.org/W2971769670","https://openalex.org/W2976217562","https://openalex.org/W2980975636","https://openalex.org/W2996992994","https://openalex.org/W3013377280","https://openalex.org/W3041434156","https://openalex.org/W4231842606","https://openalex.org/W4236965008","https://openalex.org/W4246105018","https://openalex.org/W4254097943","https://openalex.org/W4294367149","https://openalex.org/W4297951436","https://openalex.org/W4301409532","https://openalex.org/W6610517080","https://openalex.org/W6630875275","https://openalex.org/W6679713772","https://openalex.org/W6681037366","https://openalex.org/W6682981795","https://openalex.org/W6698064614","https://openalex.org/W6719630130","https://openalex.org/W6729326881","https://openalex.org/W6747248625","https://openalex.org/W6749578362","https://openalex.org/W6749694348","https://openalex.org/W6753255138","https://openalex.org/W6753824960","https://openalex.org/W6755207826","https://openalex.org/W6762166224","https://openalex.org/W6762230777","https://openalex.org/W6763363257","https://openalex.org/W6764680637","https://openalex.org/W6768340799","https://openalex.org/W6779669310"],"related_works":["https://openalex.org/W3170299350","https://openalex.org/W2368410102","https://openalex.org/W2368037387","https://openalex.org/W190186656","https://openalex.org/W2377079823","https://openalex.org/W2902352756","https://openalex.org/W2605676258","https://openalex.org/W2599962286","https://openalex.org/W2319582300","https://openalex.org/W2890847211"],"abstract_inverted_index":{"DNA/RNA":[0,11],"motif":[1,12,99,138,219],"mining":[2,13,55,100,139,220],"is":[3,212],"the":[4,21,31,39,66,70,84,129,135,153,156,162,174,190],"foundation":[5],"of":[6,33,108,131,137,142,146,166],"gene":[7,34],"function":[8],"research.":[9],"The":[10],"plays":[14],"an":[15],"extremely":[16],"important":[17],"role":[18],"in":[19,98,134,140,218],"identifying":[20],"DNA-":[22],"or":[23],"RNA-protein":[24],"binding":[25],"site,":[26],"which":[27,224],"helps":[28],"to":[29,179,214],"understand":[30,228],"mechanism":[32],"regulation":[35],"and":[36,51,69,122,151,164,189],"management.":[37],"For":[38],"past":[40],"few":[41],"decades,":[42],"researchers":[43,227],"have":[44],"been":[45],"working":[46],"on":[47],"designing":[48],"new":[49],"efficient":[50],"accurate":[52],"algorithms":[53,58],"for":[54],"motif.":[56],"These":[57],"can":[59,101,225],"be":[60,102],"roughly":[61,103],"divided":[62,104],"into":[63,105],"two":[64],"categories:":[65],"enumeration":[67],"approach":[68],"probabilistic":[71],"method.":[72],"In":[73],"recent":[74],"years,":[75],"machine":[76],"learning":[77,89,96,133,149,159,169],"methods":[78,97,192],"had":[79,90],"made":[80],"great":[81],"progress,":[82],"especially":[83],"algorithm":[85],"represented":[86],"by":[87,221],"deep":[88,95,132,148,158,168,222],"achieved":[91],"good":[92],"performance.":[93],"Existing":[94],"three":[106],"types":[107],"models:":[109],"convolutional":[110],"neural":[111,117],"network":[112,118],"(CNN)":[113],"based":[114,120,125],"models,":[115,121],"recurrent":[116],"(RNN)":[119],"hybrid":[123],"CNN-RNN":[124],"models.":[126,160],"We":[127],"introduce":[128],"application":[130],"field":[136],"terms":[141],"data":[143,186],"preprocessing,":[144],"features":[145],"existing":[147,167],"architectures":[150],"comparing":[152],"differences":[154],"between":[155],"basic":[157],"Through":[161],"analysis":[163],"comparison":[165],"methods,":[170],"we":[171],"found":[172],"that":[173],"more":[175],"complex":[176],"models":[177],"tend":[178],"perform":[180],"better":[181],"than":[182],"simple":[183,195],"ones":[184],"when":[185],"are":[187,193],"sufficient,":[188],"current":[191],"relatively":[194],"compared":[196],"with":[197],"other":[198],"fields":[199],"such":[200],"as":[201],"computer":[202,207],"vision,":[203],"language":[204],"processing":[205],"(NLP),":[206],"games,":[208],"etc.":[209],"Therefore,":[210],"it":[211],"necessary":[213],"conduct":[215],"a":[216],"summary":[217],"learning,":[223],"help":[226],"this":[229],"field.":[230]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":22},{"year":2023,"cited_by_count":33},{"year":2022,"cited_by_count":24},{"year":2021,"cited_by_count":15}],"updated_date":"2026-03-25T14:56:36.534964","created_date":"2025-10-10T00:00:00"}
